Oryzias melastigma (Indian medaka): 112148491
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Entry
112148491 CDS
T07439
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112148491 (shoc1)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Meiosis-specific proteins
Others
112148491 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
112148491
NCBI-ProteinID:
XP_024131425
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Position
LG9:4374245..4395141
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AA seq
1385 aa
AA seq
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MTERANCVFAAIGFKALDYVFEASTRLKVTWDLLALPEPYLSSTCDLFPFVHQLFKETYR
TLLVGVEQVIFSGESVLDDLRKRNQPFASLERYKYESEEEEFIPSSNPDSVNDFDLSLLK
EPEVFCDPLLEIFSKLVHPKEQEEDLFLAEDLIVDHLPHFRRLLPSLTSNLSRLKTLPVA
DPLLTPGGLVISEDHVFRSYETFLDADTVDVQMSSFIQEDFLPESLLEDEDLLLPEVVDT
LLLERPKVTPMTSFSGLWNVFPEPLEEECSVLDILRRTSAQRGWTDMFPFDPPQEDSKEK
NTKTSLMEFSGDLDPTAEIEVELVLSISPKKSSTNIRFSVTELQEEELSPFTLSLMSPRT
RTAMETAVWKAEKHPAFVERFLLSEPLTDDPAGGFQHLREASRLFKSELLSSIDTFDEME
LQLDAEIPQLIVGQSIEFTEKLSAGGQRSEAPPTLEEEFIKLEPEQEEVGSILPHFTNEG
RLQKEVTVDSPPIKLLESVNSKEDSLSAETTEKLEAKRPFMLKNKRVRWSEQTERPPTST
TKTHKPHQELDPLSTFMMLRSQQVLPAAASPQGSAGAAAEENGQTEETEPPPCAHRGGVM
LAGGAVTESEDAGRQQKPHQWTSQLIVRQECPSSRVVRVQAAESQRRAYQELLAFARPRL
DSVRQLGLRGPVWGDFSCLAPDQTHFLLKQQEKALRSTSADDAALLRDQELLLSQVVLIH
VLVTFKELLLKCDLSSGLVYLSRAAESCADPSLKLLLRKLNIILFLAQKNQESNNKLLEL
QQLLAAWLRSRTSAEKILVILSVDSDENRSTVLSSLSRVTDAAVTCVRPDEDKVKLNGAG
VVSSVCGCDCALVFEQHIGPDFPWTCFSVVVEFDHPGQSPWSAVCSQNSIQHLTFDAVVT
DSGPEEVSWCLEENVPYVLFVTEELLNCPSLLQTLESSFNVAVVERSPHPSLQMLGGTHN
YAVITVDESTAVVIQELEELDQDRASEVLVMRLTALSLQYNCCWLVLFCPDGRGGRFSSE
TFSNLALVYSSLVLFGMKPEDLDVKVLMVSDVTEMAKSINRICFTTMMRSDWDPVRYLSR
DWLTVIPSQDEECLSQFPCVNPLVGQLMLSRFPSLLRLLSASLSELTELLPEVPQKVLKL
FRDITSLYSTSDPAQPHTPFFEANPPATPSNGLWTDSGEQMRLCGGLTPNFLCEADGRED
FFCRQDAESVAFKLDLSGSFCSPDVHLQSSWTRTWTAETQNPRSRAGAAGRVVERLPEDR
SPTFSTADFSSHLYGLDSPLNLDFSFSQSPTLNHLLHSPPPPTSTGHSLSLSPPPGAFWS
TVCSHEGTAASDSHGSRIWRGRERRRSRDAAGLDGSAALPPLKMGRLSCEKVPGRSDGQT
RLRLF
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacgggctaactgtgtgtttgcagccatcggatttaaagcacttgactacgta
tttgaggctagcacacgtctgaaggtaacatgggatttactggctctgccagaaccgtat
ttatccagcacctgcgacctgttccccttcgttcaccagctgtttaaagaaacctacagg
acgctgttagttggagtagaacaggtgatcttctctggtgaatctgtcctggatgatctg
agaaagagaaaccagccattcgcatcactggaaagatacaaatatgaaagtgaggaagag
gagttcattcccagctccaatcctgactcagtgaatgactttgatcttagcttgttaaaa
gagccggaggttttctgtgatccactcctggagattttttctaagcttgtccatccaaaa
gaacaagaggaagatctcttcctggccgaggatctcatagtggatcacctcccacatttc
aggaggcttttgccttctttgacatccaacctgtccagactgaagacgcttcctgtggct
gaccctctgctgactccaggaggactcgtcatctcagaggaccacgtcttcagatcatat
gaaacatttttagacgcggacacagtcgatgttcagatgagctcctttattcaagaggac
tttcttccggagtcacttttggaggatgaggatctgcttctgcctgaggtggtggacact
cttctgctggaaaggccaaaggtcacccccatgacgagcttctctggtctttggaacgtt
tttccagaacctctagaagaggagtgttcggttctggacatcctacgtagaacttccgct
caaagggggtggacggatatgtttccgtttgatcctccgcaggaggacagcaaagagaaa
aacacaaaaacgagtttgatggagttttcaggagatctggaccctacagctgaaatagag
gtggagttagtcctgagcatttctccgaagaagagttcaaccaacatccggttctccgtc
actgaactccaggaagaagagttgtctcctttcacgctatccttgatgtctccgaggact
cggacggcgatggaaacggcggtctggaaggcagagaagcatccggcatttgtggagaga
ttcctcctatcagaacctctgacagacgatccagccggtggtttccagcatctccgtgaa
gcttcgaggctttttaaatctgaactgctcagctctatcgacacctttgatgagatggag
ctacagctggacgcagaaatcccgcagctgattgtgggacaaagcattgagttcacagag
aaactgtctgcaggaggtcagaggtctgaggctcctcccaccttagaagaagagttcatc
aaactggagcctgagcaggaggaggtcggatccatcctgcctcacttcacaaatgaaggt
cgtctccagaaggaggtcacagttgattcacctccaatcaaactcctagagtctgttaac
agcaaagaagactctctcagcgctgaaaccacagagaagcttgaagcaaagaggccgttt
atgctcaagaacaaaagagttcgatggagcgagcagaccgagcgacctccgacctccacg
accaagactcacaaaccacaccaagagctggacccgctgtccaccttcatgatgctgaga
tcccagcaggttcttccagctgctgcttcgcctcagggctcagccggcgctgcagcagaa
gaaaacggacaaactgaagagacggagccgccaccctgcgctcatcgtgggggggtgatg
ctggcgggcggcgccgtcactgaatcggaggatgctgggagacagcagaaacctcatcag
tggacgagtcagctcatcgttcgtcaggagtgtccgagcagcagagtcgtccgggttcag
gctgcagagagccagcggcgggcttaccaggagctgctggccttcgctcggccccgtttg
gactcggtcagacagctgggactccgcgggcccgtgtggggggacttcagctgcttggcc
ccggaccaaactcacttcctcctgaagcagcaggagaaggcgctgcgcagcacgtctgca
gacgacgccgcgctgctcagggaccaggagctgcttctaagtcaggtggttctgatccat
gtgctggtgacgttcaaagagctgctgctgaaatgtgacctgagcagcgggctggtgtac
ctgagcagagcggcagagtcgtgtgcagatccgagcctgaagctgctgctgaggaagctg
aacatcatcctcttcctcgctcagaaaaaccaggagtccaacaacaaactgctggagctg
cagcagctgctggctgcgtggctgcgcagcaggacgtctgcagagaaaattctcgtcatt
ctgtctgtggactcggatgaaaacaggtcgacggttctcagcagtctgagccgagtgacc
gacgctgctgtgacttgtgtccgtcctgatgaggataaagtgaagctgaatggagccggc
gtggtcagcagcgtctgcggctgcgactgtgcgctggtgtttgagcagcacatcggtccg
gacttcccctggacctgcttctctgtggtggtggagtttgaccatcccggtcagtctcca
tggtccgcggtgtgcagccagaatagcatccagcacctgacctttgacgccgtcgtcacg
gattctggcccggaggaggtctcatggtgtttggaggagaacgttccgtatgttctgttt
gtgacggaggaactcctcaactgtccttcactgctacaaactctggagtccagcttcaat
gtggcggtggtggagaggagcccccatccctccctgcagatgctcggcgggacccacaac
tacgccgtgatcacagtggatgaaagcactgcagtcgtcatccaggagctggaggaactg
gatcaggaccgagccagtgaggttctggtgatgaggctgacggcgctctccctgcagtac
aactgctgctggctcgtcctgttctgccccgacggccgggggggcaggttttccagcgag
actttcagcaacctggctctggtttattcatctctggttttgtttgggatgaagcctgaa
gatctggatgtgaaggttctaatggtgtcagacgtgactgaaatggccaaaagcatcaac
cgaatctgcttcaccaccatgatgaggagcgactgggatcctgtcagatacctgagcaga
gactggctgacggtgatcccttcacaggacgaggagtgtctgtcacagtttccatgtgtc
aatcctctggtgggtcagctgatgctcagcagattcccatccctgctccggctcctgagc
gcctccctctccgagttgacagagctgcttcctgaggtcccacagaaagtcctgaagttg
ttccgtgacatcacgtctctgtactcaacatctgatcccgctcaacctcacaccccgttc
ttcgaagcaaacccaccagccacgccctcaaacggcctctggaccgacagcggcgagcag
atgcggctctgcggcggcctcacgcccaacttcctgtgtgaagctgatggaagagaggac
tttttctgcaggcaagatgcagaatctgtagccttcaaactggacctaagtggctccttc
tgcagcccggatgttcacctccagagcagctggaccagaacctggacagcagagacacag
aacccccggagcagagcgggggctgctgggagggtcgttgaacgactccctgaggacagg
agtcccacattctcaacagctgacttcagctcccacctgtacggcctcgacagccctctg
aatctggacttcagcttcagtcaaagccccaccctgaaccacctgctccacagcccacca
ccccccacatccaccggtcacagcttgagtctgagcccccccccaggagctttctggagt
acagtctgcagccatgaaggaacggcggcttcagactcgcatggatccaggatctggaga
ggacgggagaggaggaggagccgagacgctgcaggtctggacggatcagccgcgctgccg
ccgctgaagatgggccggctgagctgcgagaaagtccctggaagaagtgacggacagacg
agactcagactcttttag
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