Oryzias melastigma (Indian medaka): 112148590
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Entry
112148590 CDS
T07439
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03030
DNA replication
oml03410
Base excision repair
oml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112148590 (pole)
03410 Base excision repair
112148590 (pole)
03420 Nucleotide excision repair
112148590 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112148590 (pole)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112148590 (pole)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112148590 (pole)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
112148590 (pole)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
112148590 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
112148590
NCBI-ProteinID:
XP_024131593
Ensembl:
ENSOMEG00000002856
UniProt:
A0A3B3B9Q2
LinkDB
All DBs
Position
LG9:19115421..19129179
Genome browser
AA seq
2291 aa
AA seq
DB search
MVLQNSGRYRADRGAGGDQENQDDGSSMSALKRLERSQFTDDMDARFGFDRMKEPGEKTG
WLINMHPTEILDEDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISYLS
KKFQGKVSKLEILPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVRKNRERE
QSNDEYTSMLSSALSGVGVTTADEDGISKSIVDQLDNVVDMREYDVPYHVRLSIDLKIHV
AHWYNVRYRSSAYPPEIIRRDDLMERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMI
DGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDNEAALIQRWFDHVQETKPNIFV
TYNGDFFDWPFVETRATAHGLSMHREIGFQKDSQGEYKSSQAIHMDCLRWVKRDSYLPVG
SHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQAFNKLTDDGHVLDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLLKRVERTMRHAIEEEEKIPLEQVTNFNEVC
DEIKEKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPG
ATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKLPPLFPNGPPRAFHTLNREEQAKHEK
KRLADYCKKAYKKTHVTRLEQRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
AAQDSGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGA
NIITQAREIIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNIM
VKEGFTNDQYHELVDPASLTYNTRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYTSVAKVADYWLDVLYSK
AANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVI
SRKPEGSPVTERAIPLAIFQAESSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSA
IQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQHL
DSDQPADIEDFGVPARPLQPAILISTKRKRASQGGDSQVESQDVELTQSWREILGPPPPM
GTTKEERLVWLRYHKKKWELQLKQRKERRKRRKLLDGEAQPVGGGVIRDGPTTGLGSFLR
RTARSILDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGAT
YKKVNRMLPRSNMVYYLYEYSVAEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQ
LGCVCMVNKHVVRDLAGREADTFDLDHLEMRSLAQFSYLEPGSVRHMYLYHHNQGHKALF
GLFIPSQRKASIFILDTVRSNQMPNLSNLYSAERTALLEKTSEELLPPEKHTFEVRAEND
MKAISRALQRILLSYKEERRGPTLIAVQSNWELRRLTAGMPVLEEFPAIPVHVLDEINYN
VLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKH
NHLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINAPGCFSTVCVELDLQSLAVNTIL
QSQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASALASYDETALVSNTFRILKSMVV
GWVREITQYQNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLAAEFKRLG
STVVYGNFNRIILCTKKRRIDDAVAYVEYITNSIHCREIFHSLSISFSRCWQFLLWMDPS
NYGGVKGKVSSDVLYGEDQTKQKKTRQEEGDEDGSEDEDEDNAEEEEDEGSDDVENLIES
NWNIMHYLPQTASCQQYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQAL
GDSTALPGMISFSQEYVASELTQNIFTITQKIQKKVTGTRNVAQTSEMFPVLPGSHLPLN
NPALEFVKYVCQVLSLDSNIVNQVNKLKRDLLRLVDVGEFSDEAQFRDPCNSYILPEVIC
HHCNFCRDLDLCKDPSVAQDGAVVPQWFCSNCQAQYETETIEVSLIEALQKKLMSYTLQD
LVCNKCKGVKEANMPLYCRCAGDFNLTFSAMSFSEQIMVFRNIASHYNMRFLEETIDWLL
EMSPQMNQSSH
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggttctacaaaatagtggacgttacagagcggaccgtggagcgggtggagaccaggaa
aaccaggatgatggctcctcgatgtcggccctcaagaggctggagcgcagtcagttcacc
gatgacatggacgctcgctttggattcgacaggatgaaggaaccgggggagaaaaccggc
tggttgatcaacatgcacccaacagagatactggatgaggacaagagaatgatcagtgcc
gtggattattatttcatccaggaggatggaagcaggtttaaggtggctcttcctttcaag
ccctatttttatattgctacaaaaaagaactgcgaaagagaggtcatatcatacttatct
aaaaagttccaaggtaaagtgtccaaacttgaaattcttccaaaagaggatctggatctg
ccaaatcatctcgtcggactgaagagaaactacatcaagctgtcattcaacaccgtggat
gacctcatcaaagtcaagcgtgagatttctcccgctgtgcgaaagaacagagagagggag
cagtcgaatgatgagtacacctccatgctgtcaagtgctttgtctggggtcggtgtgact
acagcagacgaggacgggatctcaaagagcatcgtggatcaattagacaatgtggtggat
atgagagagtacgatgtgccttaccacgtccgactgtccatcgacctgaagatccacgtc
gctcattggtacaacgttcgctacagaagcagtgcgtatccaccagagatcattcgcaga
gacgatcttatggaacgaccggatccagttgttttggcctttgacatcgaaaccaccaaa
cttcctctgaaattcccagatgcagagacggatcagatcatgatgatctcctacatgata
gacgggcaggggtttcttattacaaacagagagattgtctcagagaacattgaggatttc
gagttcacccccaaacctgaatatgagggacccttcactgttttcaatgaggataatgag
gctgctcttattcagaggtggtttgatcacgttcaagaaacaaaaccaaatatctttgtg
acctacaacggagacttctttgactggccttttgttgagactcgagctaccgcgcatgga
ctgagcatgcacagagagattggtttccagaaggacagccaaggagagtacaagtccagc
caggcaatccacatggactgtttaaggtgggtaaaaagagacagctacttacctgtgggg
agtcacaatctgaaggcggcagcaaaagctaagttgggctacgacccagtggagctggac
cccgaggaaatgtgtcgaatggcaacggaagagccgcagaccttagccacatactcggtg
tcagacgctgtggccacatactatttgtacatgaaatacgttcacccattcatctttgcg
ctgtgcacaatcattccaatggagccagatgaggtgctccgaaaaggttctgggactctg
tgtgaggccttactcatggtgcaggcctttcacgccaacatcgtgtttcccaacaagcag
gagcaggccttcaacaagctgacagacgacggtcacgttttggattcggagacctacgtg
ggtggacatgtggaggcgctggagtctggagtgtttcgcagtgacattccctgccggttt
aaaatgaatccggctgcgtttgacttccttttgaaaagagttgaaagaaccatgcggcat
gctatagaggaggaggagaaaatccctcttgagcaagttactaattttaatgaggtttgt
gatgagatcaaagagaagctgacttccttgaaggaggttccaaacagaattgaatgtcct
ctcatttaccatcttgatgtcggagcgatgtaccccaatatcatcctcacaaaccgactg
cagccgtctgctatggtggatgaagccacctgtgctgcttgtgactttaacaaacctggt
gcaacctgtcagaggaggatggcctggcaatggagaggggaaatcatgcctgcaagtcgc
agtgagtttcaccggatccagcagcaactcgagtctgaaaagctgcccccgctcttcccc
aacggccccccccgggccttccacacactcaaccgggaggagcaggccaagcacgagaag
aaacgtctggcagactactgtaagaaggcctataagaagacccacgtcaccaggttggaa
caacgcgtcaccaccatctgtcagagagaaaactctttctatgtcgacacggtcagagct
ttcagggatcgacggtatgaattcaaaggactccacaaggtgtggaagaagaagctgtca
gcagctcaggacagcggagatgctgcagaggtgaagcgctgcaaaaacatggagatcctg
tacgagtcccttcagctggctcataagtgcatccttaactccttctatggctacgtcatg
agaaaaggggcacgctggtactccatggagatggctgggattgtgtgctacactggagcc
aacatcatcactcaggccagagagatcatcgaacagattgggagacccctggagttggac
acagatggaatctggtgtgtcctccccaacactttccctgagaactttgtggtgaagacc
agcaacgagaagaagcccaaagtgaccatctcttatccgggagccatgctgaacatcatg
gtgaaagagggattcactaacgaccagtaccacgagctggtcgaccccgcgtcgctcacg
tacaacaccagagcagaaaacagcatcttttttgaggtggacgggccgtacctcgccatg
atcctgccggcttcaaaagaggaaggaaagaagctgaagaagaggtatgctgtgttcaac
gaggacggctctctggctgagctcaaaggctttgaagtgaagcgaagaggagaactccag
ctcattaagatctttcagtcgtctgtgttcgaggccttcctcaaaggtaccactttagag
gaggtctacacgtctgtggccaaagtggctgactactggctggatgtgctctacagcaag
gcagccaacatgccggatgcggagctgtttgagctgatttcagagaatcgatccatgtcc
agaaagctggaggactacggggagcagaagtctacgtccatcagcacagccaagaggctg
gcagagttcctgggagaccagatggtcaaagatgccgggctgagctgtcgctacgttatc
tcacggaagcctgaaggttcacctgtcacagaaagagccatccctctggccattttccag
gctgagtccagcgtaaagaaacatttccttcggaagtggttgaagatgcccagcctgcat
gacctggacatccgttctatcctcgattggagttattacatagagaggttgggcagtgca
atccagaaaatcatcaccatccctgcagccctgcaacaggtgaaaaaccctgttccaaga
gttcggcatcccgactggcttcataagaaactgctggagaaaaatgacatctataaacaa
aagaaaataagtgagctgtttaccagtgagggcaagaggcaggtggcccaccagcatctt
gactcagaccaaccagcagacattgaggactttggggtaccagccagacctctgcagccg
gctattctcatcagcactaagaggaagcgagcttcacaggggggcgacagccaggtggag
tctcaagatgttgagctcacacaatcctggagagaaatccttggaccccctccaccaatg
ggaaccacaaaggaggagcgtctggtgtggctgcgttatcacaagaagaagtgggagctg
cagctgaagcaaaggaaggagagaaggaagagaaggaagcttctggacggggaagcccag
cctgtcggtggaggagtgatccgagacggacccaccaccgggctggggagcttccttcgc
agaacagcacgcagcatcctcgacatgccgtggcagattgtgcaaattgcagagacgtcc
caccctggtctgtacaaactgtgggctgtgattggaaatgacctccactgcatgaagctc
aacatcccacgtgtcttctatgtcaaccagaaagttccaaagcaggaggaaggagctact
tacaaaaaggtaaaccgcatgctccctcgctccaacatggtgtactacctttatgagtac
tccgtagcggaggacatgtaccaggagcacatcaatgaaatcaacgctgacctctctgca
ccagacattgagggagtctatgaaacccaagtgcccctgctgtttcgtgctctggtccag
cttggatgtgtgtgtatggtcaacaagcatgttgtgagggatctggctggcagggaggcg
gacacctttgatctggaccaccttgagatgaggtcgctggctcaattcagctacctggag
cctggaagcgttcgtcacatgtacttatatcatcacaatcaaggccacaaagctctgttt
ggccttttcattccctctcagcgcaaagcgagcatcttcatcctggacacggtcagaagc
aaccaaatgcccaacctgagcaatctctactcagccgagcgcaccgccctcctggagaag
acgtcagaggagctcctgcccccagagaagcacacctttgaggtccgagctgaaaatgac
atgaaggccatctcccgagcgctgcagcgtatactcctgagctacaaggaggagcggcgc
gggccgaccctcatcgctgtgcagtcaaactgggaactgcgtcgacttactgcaggaatg
ccagtcctggaagaattcccagctatcccagtgcatgtactggatgagatcaactacaat
gtgttggattggcaacgccatggcgcccgacgtatgatccgccattacctcaacctggac
agctgtctgtcacaagcgtttgacatggccaggtattaccacttgcctgtggggaatcta
cctcaggatgtgtccatctttggctcggacttgttcctggcgagacatttacggaaacac
aaccacctgctgtggctttcacccaccgccaggcctgaccttggaggaaaagaggccgac
gacagtcgactggtcatggaaagtgacgaccggggctctgtggagatcaacgctcctgga
tgtttttccacggtgtgcgtggagctcgacctccagagtctggcagtgaacaccatcctg
caatcacagcatgtcaacgacatggagggcggagccagtttgggcgtcagctttgatgtg
atccagcaggcctcgctggaggacatgatgtcaggaaaccagggagccagcgctttggcg
agctacgatgagacagctctcgtctcaaacaccttcaggatcctaaagagcatggtggtt
ggatgggtccgggagatcacacaataccagaatgtatatgcagacaaccaggtgatgcac
ttctaccgctggctgcgctctcccagctctcttctgtacgacccggcgcttcaccgcacc
ctccacaacatgatgaagaaggtcttcctacagttggctgcagagttcaagcgtttgggc
tccactgttgtgtacggaaacttcaacaggatcatcctgtgcaccaaaaagcggagaatt
gacgacgccgttgcttatgtagaatacatcaccaacagcattcactgcagggaaatcttc
cactctttgtccatctctttctcccgatgctggcagttcctgctgtggatggacccctcc
aactatggaggcgttaagggaaaggtgtcctctgatgtcttgtatggcgaggaccaaacc
aaacaaaagaaaacccgacaagaggagggagacgaggatggcagtgaggatgaagatgag
gacaatgctgaggaagaggaggatgaagggagcgatgacgttgagaacctaattgagagc
aactggaacatcatgcattatcttccccagacagcttcctgtcagcaatatttcctcatg
attgtctcagcctacattgctgctgtgtaccacagcatgaaggaggaactgagacgtaat
gctcctggagcaacgccggtcaagaggcggggaggaagtcaggcttcccagcaggcattg
ggggactcgactgcacttcctggaatgatctccttttcccaagaatatgtagccagcgag
ctgacgcagaacatcttcaccatcactcagaaaatccagaaaaaggtgaccgggaccaga
aatgtggcccagacctcagagatgttcccggtactgcccggctcacacctgccgctcaac
aaccccgcgctggagttcgtcaaatatgtctgccaggttctttcccttgacagtaatata
gtgaatcaggtgaacaagctgaaaagagacctcctgcgcctggtggatgtgggagagttt
tccgacgaagcacagttccgggatccctgcaactcctacatcctgccggaagtcatctgc
caccactgcaacttttgtcgggacctggacctttgcaaggacccgtctgtggcacaggac
ggtgccgtcgtcccccagtggttctgctcaaactgccaggctcagtatgaaacggaaact
attgaggtgtccctgatagaagctcttcagaagaaactcatgagctatacgctgcaggac
ttggtatgcaacaaatgtaaaggggtgaaggaggccaacatgccgctctactgcagatgt
gccggagacttcaacctcacgttctccgctatgagcttctctgagcagatcatggtgttt
cggaacatcgcatcccactataacatgagatttctggaggagaccatcgactggctgctt
gagatgagccctcagatgaaccagagctctcactga
DBGET
integrated database retrieval system
