Oryzias melastigma (Indian medaka): 112148669
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Entry
112148669 CDS
T07439
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112148669 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112148669 (snrnp200)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112148669 (snrnp200)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112148669 (snrnp200)
Complex C
U5 SnRNP specific factors
112148669 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Sigma54_activ_2
BID
Motif
Other DBs
NCBI-GeneID:
112148669
NCBI-ProteinID:
XP_024131701
Ensembl:
ENSOMEG00000011834
UniProt:
A0A3B3DGM1
LinkDB
All DBs
Position
LG9:complement(24558948..24570887)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTR
PQNLEDRRNKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKIRDKERRREVEQLLGPSDDTRYHVLVNLGKKIT
DYGGDKELQNMDDNIDDTYGVNVQFESDEEEGDENPFGEVQDEQSDEDSEGEEAVVTTTL
SANLGETGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDPELSKIL
YKLQETEKEDIIREEQSRRERVRKSRVDDLEAMDIDHGESVMPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADNEVLVSIDKLPKYAQAGFEGFKTLN
RIQSKLFKSAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGISQDDRSIDPLLERRRMDLIHTAAN
VLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSVQTYNQLLKPTLSEIELFRVFSLSS
EFKNINVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVVKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPRLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNTEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDMAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKINDPTLKETLANGVGYLHE
GLSATERKIVEQLFNSGAVQVIVSSRSLCWGISISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKGVESI
FDIMEMEDEDRTGLLQLTDAQMADVARFCNRYPNIELAYEVVERDNIKSGSPVLVQVQLE
REEEVTGPVVAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGIH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttaccgctcgtagcctgcagtatgagtacaaagcgaactcaaacttggtg
ttgcaagcggatcgctctttgattgaccgcacacggagagatgagcccaccggagaggtg
ttgtccctggtggggaagctggaagggaccaagatgggtgacaaggctcagaggaccaga
cctcagaaccttgaagacagaagaaacaagagacgaaaaagagatgaagacaggcacgac
atcaacaaaatgaaaggttttacccttctgtctgaaggcatcgatgaaatggtgggcatt
gtgtacaagcctaaaaccaaagaaaccagagagacttatgaagtgttgctaagcttcatc
catgctgctttaggagaccagccccgtgacattttgtgcggagcagccgacgaggtactg
gcagtacttaaaaatgacaagatcagggataaagaaaggcgacgtgaagtggagcagctt
cttggaccttcagatgacacacgttatcatgtgttggtcaatcttggaaagaagatcaca
gactatgggggagacaaagaattgcagaatatggatgacaacatcgatgatacgtatggt
gtcaatgtgcagtttgaatcagatgaggaggaaggggatgaaaacccttttggtgaagtg
caagacgaacaatcagatgaagacagcgagggagaagaggcagtcgtgaccaccacactc
tctgccaatctcggtgaaacaggtgacgtaatgacagtgaagaaaaaagatttgcatccc
cgagatatcgatgccttctggcttcagcgtcagctcagccgtttctatgacgatgccatc
gtgtcacagaagaaagcggatgaagtcttagaaatcctcaaaactgccagtgatgacaga
gaatgtgagaaccagctggtgttgctgttgggtttcaacacttttgatttcatcaaaatc
ctccgtcagcaccggcgcatgattcagtattgtacaatgctggctagtgctcagagtgag
gcagaaaaggagaggattattggaaagatggagtctgatccggagctatcaaagattctc
tacaagctgcaagagacagagaaggaggacatcattcgggaagaacaatctcgtagagag
cgggtgagaaagtctcgagttgatgacttggaagcgatggacattgatcatggagagtca
gtgatgcctcgacagctgctggacctggaagacctgaccttcacccagggcagtcatttc
atggccaacaaacgctgccagctcccagacggctcttttcgcaaacagcgcaaaggttat
gaagaagtccacgttcccgccctgaaacccaaaccttttgctgacaacgaggtgcttgtt
tccatcgacaagttacccaagtacgctcaggctgggtttgaaggtttcaagactctaaat
cgaatccagagtaaactgttcaagtctgctatggagacggacgaaaaccttttagtgtgt
gctcctacgggagctggtaaaaccaacgttgccctgatggcgatgttgagagaaattggg
aagcatataaacatggatggcacaatcaatgtggacgatttcaaaatcatctacatcgca
cccatgcggtccctcgtgcaggagatggtgggaagttttagtaagcgattggctagttac
ggcatcaccgtgtctgagctgacaggagatcaccaactctgtaaagaggagatcaacgcc
acgcagatcattgtctgcacccctgagaagtgggatatcattactcggaaaggtggagag
cgtacctacacccagcttgtgcgcctcatcatcattgatgaaattcacctgctgcacgat
gaccgcggtcctgtgctggaatccctgatcgcaaggaccatccgtaatgtggaactgacc
caagaagatgtccgcctgttgggcctcagcgccacattacccaactatgaagacgtggcg
acgtgcctgcgtgtggatcctgcaaaaggactgttctactttgacaacagtttccgtcct
gtgccgctggagcagacttatgttggcatcacagagaagaaggccatcaagcgcttccag
atcatgaacgagattgtttatgaaaaaatcatggagcacgctgggaagaatcaggtgctt
gtatttgtccactccaggaaggagacgggcaagactgcccgggccatacgagacatgtgc
ttggagaaggacactctgggtctttttctcagagaagggtcagcatccaccgaagttttg
agaactgaggcagagcaatgcaagaacctggagttgaaggatttgcttccctatggcttt
gcaatccaccacgctggtatgaccagagtggaccgtactctggtggaggatttgtttgct
gatcggcacattcaggttctggtgtctacagccactctggcatggggagtcaacttgcca
gcccatactgtgatcatcaaaggaactcaagtttacagtccagagaaaggcagatggact
gagctcggggccttggatattctgcagatgcttggtcgtgctggtcgtccccagtatgac
accaagggggagggaatcctgatcacgtcccacggagagctgcagtattatctgtctctg
ctcaaccagcagcttcctattgagagtcagatggtgggaaaactacccgacatgctgaat
gcagaaattgttcttggcaatgttcagactgtgaaggatgctgtgaactggctcggctac
acctacttgtacgtgcgtatgctccgcaaccccaccctgtatggaatttcgcaggatgac
cggagtatagacccgcttctggagaggcgcaggatggacctgattcacacagcagccaac
gtcctggacaagaacagcctggtcaaatacgacaagaggacaggcgccttccaggtgaca
gacctgggacgcatcgccagtcacttttatatcactcacgactcggttcagacctacaac
cagctcctgaaacccactctcagtgagatcgagctcttcagagtcttttcactttcctca
gagtttaaaaacatcaatgtgcgagaggaagaaaaactggagcttcagaagctactggag
agagttcctattccagtgaaggagagcattgaggaacccagtgccaagattaacgtgctg
ctccaagcattcatctctcagctcaaactggaaggctttgctctcatggcagacatggtt
tatgttacacagagtgctggacggttgatgcgagccatatttgagatcgtgttaaaccga
ggctgggctcagcttacagataagaccatgaatctgtgcaagatgatcgacaagagaatg
tggcagtccatgtctcctctgcgtcagttcaagaagctgccagaggaagtggtcaagaag
attgagaagaagaactttccctttgagcggctttacgatctcaaccacaatgagatcggt
gagctgattcgaatgccaaagatggggaagaccattcacaaatacgtccatcagttcccc
agactggacctggccgtccatctgcagcccatcactcgctccactctgaaagttgagctc
acaatcactcctgacttccagtgggacgataagattcatggatcatctgaagctttctgg
attctggtggaggacgttgacagtgaagtgatcctccaccacgagtacttcctcctcaaa
gccaagtacgcccaggatgaacatctggtgacgttctttgtccccgtgtttgagcctctg
cctcctcagtacttcatccgcgtggtgtcagaccgatggctctcctgtgagactcagctc
ccagtgtccttccgccatctcatcttgccagagaagtaccctccacccactgagcttctg
gacctgcagccacttcctgtcactgcgctcaggaactctgcctttgaagctctctaccag
aacaagtttccgttcttcaatcccattcagacacaagtcttcaatgccgtctacaacagt
gatgataatgtgtttgtgggagctcccactggtagtgggaagaccatctgtgcagagttt
gccattctgagaatgctgctgcacaacacagaaggtcgctgtgtgtacatcactccaatg
gaagctctggctgagcaggtgtttgttgactggcatcagaagttccaggacatcctgaac
aagaaggtggttctcctaaccggggagaccagcactgacctgaagctcttggggaaaggt
gacatcatcatcagcacaccagacaaatgggacatcttgtctcgtcgctggaagcagaga
aagaatgtgcagaacgtcagccttttcattgtggatgaagcgcaccttattggtggagaa
aatggaccggtattggaggtcatctgctccagaatgaggtacatctcctcacagatcgag
cgtcccatccgcattgtcgccctcagctcatctctgtccaacgccaaagacatggctcac
tggctcggctgcagcaccacggccacctttaacttccacccaaatgtcagacctgtacct
ctggagcttcacattcagggtttcaacgtgagtcatactcagacacgactgctgtccatg
gccaagccagtctatcatgccatcatgaagcactctccatccaaaccagcggtggtgttt
gtcccgtcacgccgacagacgcgcctcaccgccatcgacatcctcaccttctgtgccgct
gacgtggttcctcagaggttcttgcattgcaccgagaaagacctggcgccattcctggag
aaaatcaacgatcccactctgaaagagactctggccaacggcgtgggatatctgcacgaa
ggcctgtccgcaactgaacgcaaaatagtggagcagctcttcaactcaggtgctgtccag
gtgattgtttcctctcgttctctttgctggggcatcagtatctcggcacatctggtcatc
gtcatggacacccagtactacaatggaaaaatccatgcatatgtggattatcccatatac
gacgttctccagatggtgggcaaagcaaacagacccatgctggacgatgaaggacgctgt
gtcatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtatgagcccttg
cccgtggagtcccacttggatcactgtctccacgaccatttcaacgcagagattgtgacc
aagacgattgagaacaagcaggacgccgtggattacctgacctggacgttcctctacaga
cgcatgacgcagaaccccaactactacaacctgcagggcatgtcccaccgtcacctgtct
gaccacctgtcagagctggtggaaaacacgttgcatgaccttgagcagtccaaatgcatc
agcattgaggatgaaatggatgtggcaccgctcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgtttagcatgtctctgaacgccaagacgaagatc
cgagggttaattgaaatcatctccaatgctgccgagtataaaaacattcccatcaggcac
cacgaggacacacttctccgacagctggcacagaaagtgccccacaagctcaacaacccg
aagttcaacgatccccacgtgaagacgaacttgctgctgcaagctcatctctccaggatg
cagctgagcgcagagctgcagtcagacaccgaagagatcctgagcaaggcgatccgcctc
atccaggcctgcgtggatgtgttgtccagtaacggctggctcagtcctgcactggctgct
atggagctagcccagatggtcacccaggctatgtggtccaaggactcctacctgaaacag
ctgccctacttcacctcagagcacatcaagcgctgtacagacaagggtgtggagagtata
tttgacataatggaaatggaggatgaagacagaaccggcttgctgcagctcacagacgct
cagatggcagacgtggctcgcttctgtaaccgttaccccaacatcgagctcgcgtatgaa
gtggtggaaagggacaacattaagagtggcagtccagttctggttcaggttcagctggag
cgtgaggaggaggtgaccggtcctgtcgttgctcccctcttccctcagaaacgtgaggag
ggctggtgggtcgtgatcggagacccaaagtccaacagcctcatctccatcaagagactg
actctgcagcaaaaagcaaaggtcaagctggacttcgtagccccagcgatgggcattcac
aactacacactgtacttcatgagcgacgcttacatgggctgtgatcaggagtacaagttc
agcgtggacgtgaaggaggctgacagcgatggagacagtgattcagattaa
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integrated database retrieval system
