Oryzias melastigma (Indian medaka): 112148719
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Entry
112148719 CDS
T07439
Symbol
tfip11
Name
(RefSeq) tuftelin-interacting protein 11
KO
K13103
tuftelin-interacting protein 11
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112148719 (tfip11)
Spliceosome [BR:
oml03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
112148719 (tfip11)
Other components
Complex C specific factors
112148719 (tfip11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Arteri_nsp7a
Motif
Other DBs
NCBI-GeneID:
112148719
NCBI-ProteinID:
XP_024131780
Ensembl:
ENSOMEG00000000088
LinkDB
All DBs
Position
LG9:19368865..19373302
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AA seq
829 aa
AA seq
DB search
MSMSHLYGRREEEEDGVEIESFEVTDWDLANEFNPERRRFRQTKEQATYGIWADKDSDED
ERPSFGGKRTKDYSTPVNFVSAGLRKTAAEEKQQEKDEGSDDSEEDAPAVPPPRAPRKLQ
MSNFRGNQTQRFAGGIQSGQGIGNWEKHTKGIGQKLLQKMGYQPGKGLGKNAQGIVNPIE
AKVRKGKGAVGAYGNERTQQSLQDFPVVDSEEEEEKEFQKELGQWRKDPAGSAAKKKPKY
SYKTADELKAKGKIVSRSMAPSAGELAQVKVIDMTVREPKVYYSYSQIANKHSVPDEATP
AMSTRDQKGAGFALPELEHNLQLLIDLTEQDILQSARRLQHEKDVVVSLSHESRALQSRL
DAEQDAIQKMEAVLALVERFPSGESPPGEGPSLQECAQIFETLQTDYYEEYKTMGLADLA
VAVVHPLLKEKLHSWEPLKDSAYCLEDIGQWRAILESRDLRTSGPDSNMDPYHRLLWEVW
IPVMRVCVSGWQPRMVGPMVDCVTLWAPLLPQWILDHVLEQLVLPRLQREVDNWNPLTDT
VPIHSWVHPWLPLLHSRLEPLYPPIRSKLANALQRWHPSDASARLILQPWKTVFTVGAWE
AFMVKNIIPKLALCLEELVINPHQQQMEPFHWVMDWEGMLSPSSLVSLFDKNFFPKWLQV
LCSWLSNSPNYEEITKWYLGWKGLFSDVLLTQPLIKEKFNEALDIMNRAVSSGMGGYMQP
GARENIAYLTQTERRKDFQYEALQERRDAESVAQRGIGSGVPTNFKDLIQAKAEENNIVF
MPLVAKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtcccacctttacgggcggagagaagaagaggaagacggtgtggagatcgag
agcttcgaggtgacagactgggatctggccaatgagtttaaccctgaacgccgcaggttt
aggcagaccaaggagcaagccacgtacggcatatgggctgacaaagattcagatgaagat
gagagacccagctttggtggcaagagaacaaaagattacagcactccagtgaattttgtt
agtgctggtcttcgcaaaactgcagccgaggagaaacagcaagagaaagatgaaggctct
gatgattcggaagaggatgctcctgcagttcctcctcctcgtgcacctagaaaacttcag
atgagtaatttccgcgggaatcagacacagaggtttgctggtggaatacaatctggacaa
ggtattggaaactgggagaagcacacaaaaggaatcggacagaagctattgcagaaaatg
ggctaccagcctggaaaagggcttgggaaaaatgctcaaggtattgtaaaccctattgag
gcaaaggtccgtaaaggaaaaggagctgtaggtgcatatggaaatgagagaacccagcag
agtctgcaggacttccctgtggttgactctgaagaagaagaggaaaaggagtttcagaag
gaattggggcaatggagaaaggaccctgcaggctctgcagccaagaagaaaccgaaatac
tcctacaaaactgcagatgagctgaaagctaaaggcaaaatagtttctcggagcatggca
ccatctgcaggagagttggcacaggttaaggttatagatatgactgtaagagagccaaag
gtttactacagttacagtcagatagccaacaaacacagtgttcccgatgaagcaacacca
gccatgtccactcgggatcagaagggtgctggcttcgctctccctgagctcgagcataat
cttcagctgctgatcgacctcacagagcaggacattttgcagtctgccagacgtctacag
catgaaaaggatgtggttgtttctctgagtcatgaatcccgagccttgcagagcagacta
gacgcagagcaagatgccatccagaagatggaggctgtgttggcactagtggagcgtttt
ccctctggagagtcgccaccaggggagggaccgagtcttcaggaatgtgcccagatcttt
gagactttacaaacagattattatgaagaatataaaaccatgggattggcagacctggct
gtcgcagttgttcatcctttacttaaggagaaacttcactcgtgggaacctctaaaggac
agtgcatattgtctggaagacattggtcagtggagagctatccttgaatccagggatctt
cgtactagtggccccgactcaaacatggatccttaccacagacttctatgggaagtttgg
atccctgtgatgcgagtgtgtgtgtcggggtggcagccccgtatggttggaccgatggtg
gactgcgtgacgttgtgggctcctctcctgcctcagtggatcctagatcatgtgctggaa
cagctggttttaccccgcctgcagcgtgaggtggataactggaatcctttaactgacacg
gtgcccatccactcctgggtccacccatggcttcctctactccattcgcggttagagcct
ctttacccgccaatcaggagcaagctcgccaacgctctgcagcgctggcatccaagtgat
gcctcggcgcgcctcattcttcagccatggaaaactgttttcacagtaggtgcatgggag
gccttcatggtgaaaaacatcatccccaagctagctttatgtctggaggagctggttatc
aacccacaccagcagcagatggagccgtttcactgggtgatggactgggagggaatgctg
tctccctccagtcttgtgtctctttttgacaagaacttttttccaaaatggttacaggtt
ttgtgttcatggctgagcaacagtcctaactacgaggaaatcacaaagtggtatcttggc
tggaaaggcttgtttagtgacgttctgttgactcaacctctcatcaaagagaaatttaat
gaagctttggacatcatgaaccgtgcagtgtcatcaggaatgggtggatatatgcagcct
ggtgcgagggagaacatcgcctatctcacacagacggagagacggaaagacttccagtat
gaagccttgcaggagcgccgggatgcagaaagtgtggctcaaagaggcatcggttctgga
gtgccaactaactttaaggatcttattcaggccaaagcagaggaaaacaacattgttttc
atgcccttagtggccaaacggcacgaggggaaacagctgtacacgtttggtcgtattgtt
atttacatagacagaggggttgtgtttgtgcagggggaaaagacttgggtgcccacgtct
ttgcaaagtctgatagatatggcaaaataa
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