Oryzias melastigma (Indian medaka): 112148829
Help
Entry
112148829 CDS
T07439
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
112148829 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112148829 (msh3)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
112148829 (msh3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
DUF2408
Motif
Other DBs
NCBI-GeneID:
112148829
NCBI-ProteinID:
XP_024131961
Ensembl:
ENSOMEG00000018740
LinkDB
All DBs
Position
LG9:7841713..7892403
Genome browser
AA seq
1086 aa
AA seq
DB search
MPKVKKSSSVQTSISRYFGGKSNSFQLLGGDQKLLSVEELPAKRARLSQQEELDCEPPCS
QKEPKVTTHRRGGTLCSSTLEKLKGFTSVAKHSINNSNTHEDTEENTPSSNISQRQGGMP
PREASDQLKFTKVLQKPQECEDEERKEDAPDQRSCLSPFAKSGGAKGEKGAELGSRSSSS
APSKCSKSSYTPLEQQVVQLKQQHKDALLAVECGYKYRFFGDDAEIAAKELNITCHLDHN
FMTCSIPTHRLFVHVRRLVSHGHKVGVVKQTETAAIKASGANRNALFTRQLSALYTKSTL
VGEDVNQICSLEDVEEGGHGDIMVDPPDGFLLCISENWDKLKKQLTVGLVAVQPSTGDVF
LDCFPDGSSRSELESRILKVNPVEILVPSDLSEETRRLLLSVTNASFQADDRARVERRDS
AQFEYTSAINTVTQFYCRPQKEDSRSLGRVASFESPVICCLGPLIQYLQEFNLERVLRSE
SSFQRLSCESEAMILNAATLRNLEILNNQTDRGVRGSLLWVLDHSRTPFGKRLMRKWVSQ
PLTDLQRICERQDAVQEIMESDSLVLNSVKSLLSRLPDLERGICSIYHKKSSTQEFFLIS
SHLSRLGLELQSRVPAMQSQIRSVLLRSLLLDTPDLLAPAHGFLKVLNEKAARSGNKTEL
FSDLTGFPVLQERTKQIQSVLSEIQEHLKDIRRVLKAPALNYTAVSGQEFLIEVKNSLSS
TVPSDWVKISSTKAVGRYHSPLLIERYKKVQQLREQLLLDCQREWTDFLDQFGEHYHTMK
RAISHLATMDCLFSLAEVAQQGDYCRPKVCADQRQIMIRDGRHPAIDLLMGEQNQFVPNH
TDLQGDTKRTMIITGPNMGGKSSYIRQVALICIMAQIGSYVPASEARLGLLDGIYTRMGA
SDNIYKGRSTFMEELTEASEIICRASERSLVILDELGRGTSTHDGIAIAYATLEYFIKHV
KSFTLFVTHYPPLCELERTYPDHVSNYHMAFLLNETCISSDTSDSDVQPEFITFLYKLTE
GAAGQSYGLNVAKLAGVPDPILCTAARKAQELESVVEARRRSKKLLTDMWSITDKPSLMQ
WLQSNS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaagtaaagaagtccagctctgttcagacctccattagcagatattttggagga
aaaagcaacagctttcaacttcttggaggagatcagaaacttctctctgtcgaagaactg
ccggcaaaacgagcaaggctttctcagcaggaagaactggactgtgagcctccatgttct
cagaaagagccaaaagtcactacccatagacgtggaggcaccttatgttcatccacatta
gaaaagctaaaaggcttcacctctgtggccaaacacagcatcaacaatagtaacacccat
gaagacacagaggaaaatacccctagcagtaacatcagtcaaaggcaaggaggtatgcct
ccacgtgaagcctctgatcaactcaagttcactaaagtattgcaaaaaccacaggagtgt
gaggatgaagaaagaaaagaagatgcacctgatcagagatcttgcctgtctccgtttgca
aagtcaggaggagcaaaaggagagaagggtgcagagttgggttcccgctcatcttccagt
gccccttcaaaatgctcaaagagttcttacactccactagagcagcaggtcgtccaactc
aaacagcagcataaagatgctttgctggctgtagagtgtggttacaagtataggtttttt
ggagacgatgctgagattgcagcaaaggagctgaatatcacctgtcacctggatcataac
ttcatgacctgcagcatcccaacacaccgactgtttgttcacgtcagacggctggtgtct
catggacacaaggttggagtggttaaacagaccgagacagctgcgattaaagcctcaggg
gcgaatagaaatgccctgtttacccgtcagctcagtgctttgtacacaaagtccactctg
gttggagaagacgtgaaccagatctgcagtctggaggatgttgaggaggggggccacggg
gatatcatggtagacccccctgacggctttctgctatgcatcagtgagaactgggacaag
ctgaagaagcagctgactgtgggcttggtggcggttcagcccagcactggagacgtcttt
ctggattgttttcctgacggctcgtctcgctctgaactggagagccgtatcttaaaggtc
aaccctgtggagattctggtgccctctgacctctcagaagagactcggcggctgctgctc
agcgtcactaatgccagtttccaggctgacgacagagcgagagttgaaaggagggacagc
gcccagtttgagtacacctctgcaataaacaccgtcacccaattctactgccgaccccag
aaggaagactcgcgctctctggggagggtggcgtccttcgagagcccggtgatctgctgt
ctggggccgctcatccagtacctccaagaattcaacttggaaagagttcttagaagtgaa
agttcatttcagcggctgtcctgcgagtcagaggcgatgatcctcaacgctgccactctc
aggaacctggaaatactaaacaatcagacagacagaggtgtgaggggaagcttgctctgg
gtgttggaccacagccgcactccttttggaaagcgactcatgagaaaatgggtgagccag
ccgctcacagacctccagcgtatctgtgaaaggcaggatgctgtgcaggaaatcatggag
tcagactcactcgttctaaactctgtgaaatctttgctgtcacgtctgcctgacttggaa
agaggcatctgcagcatttaccacaaaaagtcttccactcaggagtttttcctcataagt
agccatctttcccgcttggggttggaactgcagtctcgggttccggccatgcagtctcaa
atccgttctgtgctgctccggagtcttttattggacaccccagacctgctggcgccggcc
cacggcttccttaaagttctcaatgaaaaagcagcaaggtccgggaacaagacggagctg
ttctcagatctgacgggattcccggtgctgcaggaaagaacaaaacagatccagtctgtc
ctaagtgagatccaggagcacctcaaagacatccggagggtcctgaaggcccccgcgctc
aactacaccgcagtctccggacaggagtttctgattgaagtgaagaactcattgtcatcc
actgttccatccgattgggtcaaaatcagcagcacaaaagcggttggcaggtatcactct
ccacttctcatagaacgctacaagaaagtgcagcagctcagagagcagctgctgctggac
tgccagagggagtggactgattttctggatcaatttggggagcattaccacaccatgaaa
agggctattagtcacctagcaaccatggactgtctcttctcattggctgaggtcgctcaa
caaggagactattgcagaccgaaagtgtgtgcggatcagcgacagataatgatcagggat
ggcaggcatccagccatagacctactgatgggagagcaaaaccagtttgttcctaaccac
accgacctgcagggcgataccaagagaacgatgataatcaccgggcctaacatggggggc
aagagctcctatatccgacaggttgcactgatctgcatcatggctcagataggctcctac
gtcccggcctctgaggctcgtttgggcttgcttgatggtatttacacccggatgggagct
tcagataacatctacaaagggcgcagcacattcatggaggagctcacagaggcttcggag
atcatttgccgtgcgtcggagcgctctttggtcatcctggatgaactgggacgagggaca
agcactcatgatggaatcgccatcgcttatgccactcttgagtacttcatcaaacatgtg
aaatccttcaccctctttgtgacccattatcctcctctgtgtgagctggagcgcacgtat
cctgatcatgtgtccaactaccacatggctttcctgctcaatgagacgtgcatctcttct
gataccagcgatagtgacgttcagcccgagttcatcactttcctctacaaactgacggaa
ggagctgcagggcaaagctacggcctgaacgtcgccaagctcgctggcgttccagatccc
attctgtgcaccgctgctcgcaaagcccaagaactggagagcgtcgtcgaggccagaagg
agatctaaaaaactactcactgatatgtggagcatcacggacaaaccatccctcatgcaa
tggctgcagtcaaactcttga
DBGET
integrated database retrieval system
