Oryzias melastigma (Indian medaka): 112148839
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Entry
112148839 CDS
T07439
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112148839 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112148839 (lsm1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112148839 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
112148839 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
112148839
NCBI-ProteinID:
XP_024131981
Ensembl:
ENSOMEG00000012454
LinkDB
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Position
LG9:24796568..24798711
Genome browser
AA seq
133 aa
AA seq
DB search
MNYVPGTASLIDDIDKKHLVLLRDGRTLIGYLRSIDQFANLVFHQTVERIHVGKKFGDIP
RGIFIVRGENVVLLGEIDLDKPCDTVLQQVSIEEILEEQRLQQQAKQETEKVKMQVLKDR
GLSVPKADNLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacgtaccagggacggcgagtctcattgacgatattgacaaaaagcacttagtt
ctgctgcgagatggaagaacactaatcggttacctgagaagcatcgatcagtttgccaat
ttagtctttcatcagacggtggagcgcatccatgtgggaaagaagtttggagatattccc
agaggtatcttcatcgtcagaggagaaaatgtagttctacttggggagatagatttggat
aaaccctgcgacacggtcttgcagcaggtttccattgaggagatcctggaggagcagcgg
ttgcagcagcaggccaaacaggagacagagaaagtcaaaatgcaagttctgaaggaccgg
ggcctttccgtacccaaagctgacaatttggacgagtactga
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integrated database retrieval system
