Oryzias melastigma (Indian medaka): 112149150
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Entry
112149150 CDS
T07439
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112149150
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112149150
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112149150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Ank_4
Motif
Other DBs
NCBI-GeneID:
112149150
NCBI-ProteinID:
XP_024132414
Ensembl:
ENSOMEG00000023757
UniProt:
A0A3B3E229
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Position
LG13:complement(4887337..4896269)
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AA seq
744 aa
AA seq
DB search
MEKEKPQDSNNSKKQGQEDSYDPLLRKEIFIPMDTNNPLTSQNLIEHDNVSSAIFTRDKV
FKAVSQGDAAQLQGLLHYLQTNDKKLTSPDFIDETNGKTALLKALLNLKDGKNDTIEVLL
DIAEKTRDLKELINASYTDPCYKGQTALHVAIERRSLDLVKLLVQKGADVQAKAEGTFFQ
NNGEMGFYFGELPLSLAACTNQPDIVSFLMENPENPDRRADLTDKDSEGNTVLHVLIIVA
DDSNETTEMISKIYDDILVKHYKIEENSRIQLEDIENNQGLTPLKLAAKLGKIGLFRHML
NREFIDEETRPLSRKFTECVYGPVHSSLYDISSIDTSESNSVLEIIVHGNNIPNRPEMIK
LEPLRSLLQDKWERFGAKLFLLNFLCYLMYLAIFTTVAFYRKEGQPPFPVENHPSDHLRC
VGELISVFGAVRFFYKAITIFHKKPPNLHLLFTDGVSEILFFLQAALLLCCTLLYFCGRR
EYVSLLVLSLALAWTNVLYYTRGSKQLGMYHVMMQRMILGDLFHFLFVYCVLLFGFSAAV
VTLMDNSPTSHNDTHPRARSFVLCEKPSYNDIGFTTLELFKFTIGMGDLEFTDQVQYKEV
FYILLICYIILTYILMLNMLIALMGNTVERISEQSETIWNLQRAFTILDMEKALLLKLSN
KIQCKVSKKVHSRSGKGRNHKFVRVSEINWKKWRSDLGFKLEEETENETSSETNKGESGT
PWSINGFFQRIRSRRGRQQQNTVV
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaaaagccacaggacagtaacaactcaaaaaaacaaggacaagaggacagt
tatgacccgctgcttagaaaagaaatcttcatacctatggacaccaataaccctctgaca
agccaaaaccttattgagcatgacaacgtctccagtgcgattttcacaagggacaaggtg
tttaaagctgtatctcagggagacgcagctcagctccagggactgcttcactacctgcaa
acaaatgataagaaactcacaagtccagacttcatagatgagacaaatgggaaaacagca
ctactgaaagcactgctgaaccttaaagatggcaaaaatgacaccattgaggttctcctg
gacatagcagagaaaactcgggacttgaaggaactaataaatgcctcttacacggaccct
tgctacaaaggtcaaactgctttgcatgttgctattgagagaaggagtttggaccttgtt
aaactgctggtccagaaaggagcagatgtgcaagctaaagccgagggcacatttttccag
aataatggagaaatgggtttttattttggggagctcccattatcactggcagcctgcacg
aaccaaccagacattgtgtcctttctcatggaaaacccagaaaacccagacagaagagct
gacctgacggacaaagactcagaaggaaacactgtgttacacgtcctgataattgttgca
gatgactctaacgaaaccacagagatgatttcaaagatctatgatgacattcttgtgaag
cactataagattgaggaaaacagccgaatccagctggaggacattgaaaataaccaagga
ctgactcctttgaaattggctgctaagctcggcaagattgggctcttccgacacatgctg
aatcgcgagtttatagacgaggagacccggccgctgtcaaggaaattcaccgagtgtgtt
tacggacccgttcattcttcactttacgacataagttccatcgacaccagcgaatccaac
tctgtgttggagattattgtccatgggaataatattccaaatcgacctgagatgatcaag
ctggagcctctgcgcagtcttcttcaggacaagtgggagagatttggtgccaaactgttc
ctcctgaactttttgtgctacttgatgtacctcgccatcttcaccactgtggctttctat
agaaaggagggacagcccccatttccagtggaaaatcacccatctgaccatttgcgttgt
gtcggtgagcttatcagtgtgtttggagcagtaagattcttttataaagcgataaccatt
ttccacaagaagccaccaaacctccatttgttgtttaccgatggcgtcagtgaaattcta
tttttcctgcaggccgccctgctcctgtgctgcacacttttgtacttctgtggacgcagg
gagtatgtcagccttctcgttctgtcgctagctctggcttggacgaatgttctctattac
actagaggatctaagcaactggggatgtaccatgtgatgatgcaaagaatgatcctcggc
gatctgtttcactttttatttgtctactgtgtcttactttttggattttctgcagcggtg
gttactctcatggacaactcacctacatctcacaatgatacccatccaagagcaaggagc
tttgtcttgtgcgaaaagcccagttacaatgatattggtttcaccacattggagctgttc
aagttcaccattggaatgggagatctggaattcactgatcaagttcagtacaaagaggtt
ttctacatccttctaatctgctacatcattctgacttacatcctgatgctgaacatgctc
atcgcactgatggggaacacggtggaacggatctcagaacaaagtgaaacaatctggaac
cttcagagagccttcacaattcttgacatggaaaaggctctgctactaaagctgagtaac
aagatccagtgcaaggtttcaaagaaggtgcattcacgatctggcaagggacggaatcat
aaatttgttcgggtgtctgaaatcaactggaagaaatggaggtcagatctcggtttcaaa
ctggaagaagagactgaaaacgaaacgagctccgagaccaacaaaggagaatccggaact
ccatggagcattaatggatttttccagagaattcgctctagacgaggccgacagcagcag
aacacggttgtttaa
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