Oryzias melastigma (Indian medaka): 112149192
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Entry
112149192 CDS
T07439
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112149192 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112149192 (trip12)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112149192 (trip12)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
HECT type E3
112149192 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
112149192
NCBI-ProteinID:
XP_024132499
Ensembl:
ENSOMEG00000003723
LinkDB
All DBs
Position
LG13:23340360..23369252
Genome browser
AA seq
2086 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQTEQTKHKTNSPPESRRSNSKAPKAT
ASSATGQSRGHSSRRSGLTLSVASFVLQEDPETAGTSEQERSGHFSKSEGTRGLKRSEAP
DQISVLGPTPSKKSKPIHPPRDNTSETKKGPAKSKKRPVASDSSASSGRGQSKKSVVAGG
SPIQKRKKSDTLPGLSSTAASLPNCSEGRTAKPTKLASKSAASAKAGCSNVTDSSSSSAS
SSSSSSITGTNSTATQGARVKQGKDQSKARRSRSASSPSPRRSTRDKEQAKTTSSSKFEW
AARFNPKVNLPKPKLSLPGSSKTETSKPGPSGLQAKLANLRRSTKKRSESPPAELPSFRR
STRQKTTGSCASTSRRGSGLGKRGAADSRRQEKMADSDNNQDGANSSAARTDEASQGASA
SSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGAS
SKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEHNF
EIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRHSK
AILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTHQD
KKSVESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPVLSSGMFIMVVRMF
SLMCSNCPSLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICELM
PCLPREGIFAVDVMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDEIS
LSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLSNPNTGSHQEVRREDARAQLMKEDP
ELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLRDVLRNHAVSSHIA
SMLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLAESESFLVTSPPKAC
PSGTASLCTTTISTASTTATNNATSDLGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLPKR
GPRRPKYSPPRDDDKVDNQAKSPTSTQSPKSSFLASLNPKSWGKLGAQTNNANSEQSRTA
GVSGLARAPPKDSISNNRDKIKAWIKEQASKFVERYFNSENVDGSNPALNVLQRLCTATE
QLSLQVDGGLECLAEISSIVSESDVSSFEIQHSGLVKQLLVYLSSNTDRDLLSRDIRIKR
FLHVFTGCPAPGMEAVGQLDPTETAPFLALVYKMNSCLSQMEQFPVKVHDFPSGNGNGSR
SVSNQTFSLTVQRFLNPRGKPSSPFFRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGP
VKIDPLALVQAIERYLVVRGYGRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQF
YIGDHLLPYNMTVYQAVRQYSLQAEEERESTDDEANPLGRAGIWTKTHTIWYKPVREDED
GGKDAVGGKRGRAQTAPTKTSPRNAKKQDELWHDGVCPSIINPLDTYLNSEPPETITFDD
PSLDVILLLRVLHAISRYWFYLHENAACKEMITTNEFINSKLTAKANRQLQDPLVIMTGN
IPTWLIELGKSCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRL
DRKKRTINREELLKQAESVMQDLGSSRAMLEIQYENEVGTGLGPTQEFYALVSQELQRAD
LGLWRGEEVTLANPKGNQEGTKYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAK
AIMDFRLLDLPLGLPFYKWMLRHETSVSSHDLVNIDPGVAKSIQHLEDIIRQKKRLELDR
SQTRETLQQALESLNMNGCSVEDLGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVV
YWTLNEGVSRQFESFREGFESVFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPD
HGYTHDSRAIRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFEST
ENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS
NT seq
6261 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagtagctggaaggttgcagacagagcagacaaaa
cacaaaacaaattccccacctgaaagtagaagatccaattctaaggctcccaaagccaca
gccagctccgctactggccagtccagagggcacagctcaagaagaagcggtcttactttg
tccgtggcttcatttgttttgcaagaagaccctgagactgcaggaacatctgagcaagaa
cgatcaggccatttttcaaaaagcgaaggcacccgcggactcaaacgaagcgaagctcct
gaccaaatcagtgtccttggaccgaccccttccaagaagtccaaacccatccacccaccc
cgagacaatacctcagagaccaagaaaggcccggcaaagtccaagaagagacctgtggcc
tcagactcctctgcgtcatcaggtcgaggtcagagcaaaaagagtgtggttgctgggggc
tccccgatccagaaaaggaaaaaatcagacactctccccggtctaagtagtaccgctgct
tccctccctaattgtagtgagggcagaactgcaaaacccaccaagctggcgtctaaatca
gccgcctcagccaaagctgggtgtagcaacgtgacagactcctcctcctcttctgcttca
tcctcttcctcttcctccataacaggcaccaacagcactgccacacagggtgccagagtc
aaacagggaaaagatcagagcaaagcgcgtcgctctcgctcagcatctagcccctccccg
cgccgtagcacacgagacaaggaacaggccaaaaccaccagctcgtcaaaatttgagtgg
gcagcacgctttaaccccaaagtcaacctgccaaaacccaaactgtctttacccggatcc
tccaaaaccgagacctccaagcccggcccatcaggactgcaagctaaactagcaaacttg
agaagatccaccaagaagcgcagcgagtctcctccagcagagctccccagctttcggcgg
agcacacggcagaagaccacgggctcctgtgccagcaccagtcggcggggttcaggcctg
ggcaagcgcggggcagctgactctcgccgccaagagaaaatggccgactccgacaacaac
caagatggggccaactcatcagccgctcgcaccgatgaagcttcacaaggagcctcagct
tcaagttcagtagctggagctgtaggtatgacaacttctggagaaagtgagtctgatgat
tctgaaatgggaaggcttcaagctttgctggaggctcgaggtctccctcctcaccttttt
ggacctttgggacctcgtatgtcacagctgttccataggaccataggcagtggagccagt
tccaaagcccagcagctgctgcagggcctgcaggccactggcgacgagtctcagcagctc
caagctgcaattgagatgtgccagctcttggtgatgggcaatgaggaaactcttggtgga
tttccagtcaaaagtgtggttcctgctctgatcacactcctacagatggaacataacttt
gaaattatgaaccatgcctcacgtgcactcacctacatgatggaggctctcccgcggtcg
tctgctgtggtggttgatgcaattcctgtcttcctagagaagctccaggtgatccagttc
attgacgttgcagagcaggccctgactgccttagagatgttgtcaaggcgacacagtaaa
gccattttgcaggccggtgggctggcagactgccttctctacctggagttcttcagcatc
aacgctcagaggaatgccttggccattgcagcaaactgctgccagagcatcactccagac
gagttccactttgttgcagattctctgcctctgttgactcagagactcacacaccaggac
aagaagtccgttgaaagcacttgtctctgttttgccagactggtggacaactttcagcac
gaagagaacctgctgcaggaagtggcatcaagagacttgttaacaaacattcagcagctg
ctggttgtgactcctcctgtgctcagctcggggatgttcataatggtcgtacgcatgttt
tcactaatgtgctctaactgtccaagcctggcagtccagcttatgaaacagaatatagca
gaaacgctgcgttttcttctgtgtggtgcatcaaatggcagctgccaggagcagattgaa
ctggtacccaggagtccccaggagctctatgaactgacttccctcatatgtgagctgatg
ccttgcttgcctagagagggcatctttgccgttgatgtgatgctaaagaagggcagtgcc
cagacaacagagggagctatctggcagtggagggatgaccgaggcctgtggcatccttac
aatcgtatcgacagccgcattatcgagacagcccaccagaacggggaagatgagatcagc
ttgtcgaccctgggccgagtgtacactattgacttcaactctatgcagcagataaatgaa
gatactggaacggcgcgtggcatccagaggaagcccaatcctctgtccaaccccaacaca
ggaagtcaccaggaggtcagacgagaagatgcacgagcccagttgatgaaggaggacccc
gagctggcaaagtgcttcatcaaaacactgtttggggtcctgtatgaggtgtacagctcc
tcagctggccctgctgtccgacacaagtgccttagagccatcctcaggatcatctacttt
gctgatgcagagcttctgagggatgtgctgaggaaccatgctgtgtccagtcacattgcc
tccatgctgtccagccaggacctgaagattgtagttggttctctgcagatggctgagatc
ctcatgcagaagctgccagatgtgttcagtgtctattttagaagagaaggtgtgatgcac
caggtgaaaaaccttgcagagtcggagagctttctggtcaccagtcctcccaaagcttgc
cctagtggtacagccagtctctgcaccacaaccatcagcactgcttcgacgacggccact
aacaatgcaacttctgacctgggctctcccagcttccagcacagtatggacgactctctg
gacctcagcccacaggggcggttaagtgatgtcctaaagagaaagagacttcccaaaaga
ggacccaggaggcccaaatactctccaccaagagacgatgacaaagtagacaatcaggct
aaaagccccactagtactcagtcccccaagtcctcctttttggccagtttgaatcccaaa
agctgggggaagcttggtgcccaaactaataacgccaactctgagcagtcacgcactgca
ggggtgagtggcttggcgagggcacctcctaaggactccatttccaataacagagacaaa
ataaaagcctggatcaaagaacaggcaagtaaatttgtggagcgttacttcaactctgaa
aacgtggatggcagcaatcctgcactgaatgttctccagagactctgcacagccactgaa
cagctcagtctgcaggtggacggtggcttagagtgcctagcagagatctccagcattgtg
tccgagtctgacgtgtcgtcctttgagatccagcacagcgggctggtgaagcagctcctg
gtctacctttcctcaaacaccgacagagacttgctgagtcgtgacatcaggatcaagcgg
ttcctccacgtgtttaccggctgtccagccccaggaatggaggctgtaggtcagctggac
ccgaccgagaccgcgcccttcctggccctggtgtacaaaatgaacagctgtctgagtcag
atggagcagttcccagtgaaggtccacgacttccccagcggtaacggcaacggcagcagg
tctgtctccaaccaaaccttcagtctcaccgttcagagattcctgaatcctcgaggaaaa
ccttcatctccattcttcaggggttcccaagcactgaagttcttcaacacgcatcagctc
aagtgtcagctgcagagacacccggactgcactaatgtcaagcagtggaagggcggccca
gtgaagatcgatcccctggctctggtgcaggccattgagagatatctagtggtcagaggt
tacggtcgaatcagggaagaggatgaagacagtgatgacgacggttcagatgatgaaatt
gacgagtcactggcggcgcagttcctaaattctggcagcgtccggcaccggttacagttc
tacattggcgaccacttgctaccgtacaacatgacggtgtaccaggctgtgcggcagtac
agcctccaggcggaagaagaaagggagtcgacagacgacgaggccaaccctctgggccga
gctggaatctggaccaaaacgcacacgatatggtataagcctgtcagagaagatgaggat
ggaggcaaggatgctgtgggtggaaagaggggcagagctcagacggctcccaccaaaacc
tcaccccgaaacgccaagaagcaggacgagctgtggcacgatggcgtctgtcccagcatc
atcaatcctttagacacatacctcaattcagagccacctgaaaccataacctttgatgac
ccctctctggacgtcatcctgctgctgagggttcttcacgccatcagtagatactggttc
tacctgcatgagaatgctgcttgtaaagaaatgataactaccaatgagttcataaacagt
aaattgactgccaaagccaaccgtcagctgcaggacccgctggtcatcatgacagggaac
atccccacctggctcattgagcttggaaaaagctgccccttcttcttcccgtttgacacc
cggcagatgttattctatgtaaccgcctttgatcgcgacagagccatgcagcggcttctg
gacaccaaccctgagatcaaccagtcagactctcaggacagcagagtggctcctcgcctc
gacaggaaaaagaggacgataaaccgtgaggaacttctcaaacaggcagagtctgtaatg
caggacctcggcagctccagagccatgctggagattcagtacgagaatgaggttggaaca
ggtctgggccccacccaggagttttatgctctggtgtctcaggagcttcagagagccgat
cttggtctttggagaggtgaagaggtcactctggcaaatcctaaaggaaatcaggagggt
acaaagtacatgttcagctccagaggactgtttgcagttccatttggcagaacaaccaaa
ccagcacacatagccaaaatcaaaatgaagttccgcttcttaggaaagttgatggccaaa
gccatcatggacttcagactgctggatctgcccctggggctcccattttataagtggatg
ctgcggcacgagacgtctgtgagctcacacgacctggtgaacatcgatccaggtgtggcc
aagtccatccagcatctggaggacatcattcggcagaagaagaggctggagctggaccga
tctcagactagagaaaccttacagcaagctctggaaagcctgaacatgaacggctgctcc
gtggaggacctgggcttggacttcactcttccaggattcccaaacatcgagctgaaaaag
gggggcaaagatgtgccggtcacaatctacaacctggaggagtacctcaggttggtggtt
tactggactttaaatgaaggagtctcgagacaatttgagtcctttcgggaaggattcgag
tcagtctttcccttgcatcacctgcagtatttctacccagaagagctcgaccagctgctg
tgcggcagcaaatcagagacgtgggatgtaaagacgctgatggagtgttgcagaccggac
catggatacacgcatgacagtcgtgccatccggttcctgtttgaggtgttgagcagcttc
gacgcggagcagcagagactcttcttgcagtttgtcacaggaagccccagactgcctgtt
ggaggtttccgcagcctgaatccccctctgaccattgtgaggaagacgttcgagtcgacg
gagaacccggacgacttcctcccctcagtcatgacctgtgtaaactacctgaagctgcct
gactactccagcatcgagatcatgcgagagaaactgttgattgcagctcgcgagggccag
cagtccttccacctttcctga
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