Oryzias melastigma (Indian medaka): 112149200
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Entry
112149200 CDS
T07439
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112149200
03041 Spliceosome [BR:
oml03041
]
112149200
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
112149200
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
112149200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
112149200
NCBI-ProteinID:
XP_024132514
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All DBs
Position
LG13:complement(8587947..8619699)
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AA seq
744 aa
AA seq
DB search
MEAVNAFNMELFSMIDMKPPISRAKMMSVTKSAIKAIKLYKHVVQIVEKFIKKCKPELKV
PGLYVVDSIVRQSRHQFGVEKDVFGPRFLKNFTDTFQNLFLCPEDDKNKILRVLNLWQKN
GVFEMNILQPLMDMATSVASPSPTFGDPVAPQKEAETLVSNASVLPDEHQLPTSDALAAV
AQLLQSPHCQELQRMLQNLQQADRSTVNTNNLPNAPPMPVSQLNQSNSRSANRSSLAEKL
LDRFDYDDDPEDVQTSENNIQLQNISESLLRRFSDQRAGTDFQAVMGENAEIKHLGGGSH
VERHMIPDGYPHQNENYPQTKESSVEKHRRDGRRRGHGRRSRSRTRSRSPRRRSRSSSRS
ERSRHRGSRSRERRWRSHSNSQDRNQSEKDRERRQKGLPSIKSQTLSVCSTTLWVGQLDK
KTQQSDVTSLLEEFGQIESIHMIPPRGCAYIVMVHRQDAYTALKKLSRGSYKVNQKPVKI
AWALNKGIKSAHKKFWDVERGVCYIPWSKVKVEELESYREGGMLDADTLNPEWNFGKDLN
HQAAVNGIPDDGVNTLVQMPIIQQTEALGSPSAFPGPIMLSPTSLPAGGAPFMPAKFDPA
SLSAARLLVPLDARENAGDKDPSLDTGTCNQMGSPGSSVMTLTPPAMQGPPGPPMAPLQP
PPGMPNPHVPPFLASPNMQHMPPQMMPDGPMFPPNRFRMRMPFPPRGPPFQSCPPVGPEA
DREGRFFRGVRPGFPCPPFQRGRW
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtcaacgcgttcaacatggagctgttctccatgattgacatgaagcccccg
atatcccgggctaaaatgatgtccgtaaccaaatcagctattaaagctatcaagctttac
aaacatgttgtccagattgttgaaaagttcatcaagaagtgcaagcccgaattaaaagtt
cctggtttatatgttgttgattccatcgttcggcaatcccgtcaccagtttggtgttgaa
aaggatgtttttggacccaggttcttgaagaactttacagacaccttccaaaaccttttt
ctatgtccagaggatgataagaacaaaatacttcgtgtcctgaacctgtggcagaagaac
ggtgtgtttgagatgaacattcttcagcctttgatggatatggctacttctgttgcttca
ccatctcctacctttggagatcctgttgccccgcaaaaagaggcagaaacgttggtcagt
aatgcctctgttttacctgatgaacatcaactccccacatctgatgccttagctgctgtg
gcacagctgcttcagtccccccactgtcaggagttacagaggatgctgcagaaccttcag
caagcagatagatctactgtaaacacgaacaatttacccaacgcaccgccgatgccggtt
tcccaactcaaccaaagtaattcccgaagtgcaaacagaagttctttggccgagaaactc
ctcgaccgatttgactatgatgatgaccccgaggacgtgcaaacttcagagaacaacatt
cagttgcaaaacatttctgaaagcttattgagacggttttcggatcagagagctggaaca
gactttcaggctgtgatgggagagaatgcagaaataaagcaccttggaggaggaagtcac
gttgaacgtcatatgataccagatggatatcctcatcagaatgaaaattaccctcaaaca
aaggaaagttctgttgaaaagcatagacgggacggcagacgcagaggtcatggcaggaga
tccagatccagaactcgttccagatctccaaggagaagatcaagatcttcgtctcgctca
gagagatcgaggcatcgaggctcccgttccagagagcgacgctggagatcccactccaat
tctcaggacaggaatcaaagcgagaaagacagagaacgtagacagaaaggtctccccagc
ataaagagtcaaacactcagtgtttgcagtactacactctgggtcgggcagcttgacaag
aaaactcagcagtcggatgtgacatcccttttggaggagtttggccagatcgagtccatc
catatgattcctccgaggggttgtgcctacattgtcatggttcatagacaggatgcgtat
acggctttgaaaaaactcagccgagggtcttataaagtcaaccagaaacctgtgaagatt
gcttgggctttaaacaaaggtataaaatcagcgcacaaaaagttctgggatgtggaacgc
ggcgtttgttacattccgtggagcaaagtgaaagttgaggagttggagagctatcgagaa
gggggtatgctggatgcagatactcttaatccagagtggaactttgggaaggacctcaac
caccaggcagctgtaaacgggattccagatgacggtgtcaatactcttgttcagatgcca
ataattcagcagactgaagcgttaggaagcccctcagcttttcctggccccatcatgctt
tctcccacatcactgcctgcaggaggagctcctttcatgcctgcgaagttcgaccctgca
agtttgtcagctgcaagacttctagttcctttggacgccagagaaaatgcaggagacaaa
gatccctccttggatactggaacctgtaaccagatgggatctcccggctcatcagtgatg
accctaacccctccagctatgcagggacccccaggaccgccgatggccccgctgcagcct
cctcctggcatgccgaatcctcacgtcccgcctttcctggcgtctccaaacatgcagcac
atgcccccgcagatgatgccagacggaccaatgtttccaccaaaccgattccgaatgcgc
atgcctttccctcctcgcggacccccgttccaaagctgcccccccgtgggacctgaggcc
gacagggaggggcggtttttcagaggcgtcagaccgggcttcccctgcccaccttttcag
agggggaggtggtga
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