Oryzias melastigma (Indian medaka): 112149251
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Entry
112149251 CDS
T07439
Symbol
slco1c1
Name
(RefSeq) solute carrier organic anion transporter family member 1C1 isoform X1
KO
K08747
solute carrier organic anion transporter family, member 1C
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
112149251 (slco1c1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112149251 (slco1c1)
Transporters [BR:
oml02000
]
Solute carrier family (SLC)
SLC21/ASLCO: Organic anion transporter
112149251 (slco1c1)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
OATP
MFS_1
Kazal_2
Sugar_tr
Kazal_1
Motif
Other DBs
NCBI-GeneID:
112149251
NCBI-ProteinID:
XP_024132620
Ensembl:
ENSOMEG00000017506
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All DBs
Position
LG13:18669824..18706403
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AA seq
702 aa
AA seq
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MEDGAEEDRTRENRGCDGTDRQSHTSPCTSLRIFLVALSFAYFAKALSGSYMKSTITQLE
RRFDIPSYLIGVIDGSFEIGNLLVIAFVSYFGAKLHRPKIIAMGCVLMSIGTFIIALPHF
IIGRYEYETSVRWDENSTLSPAPCRAGLPAELTQDGKRLQEQSTDCESESNLSMWIYVLL
GNVLRGIGETPVQPLGISYIDDFTTEENAALYVGCVQTISVVGPVFGYLLGSLCAKIYVD
IGFVKMESITITPADSRWVGAWWLGYLIAGVITLLSAIPFWFLPRSLPVPGPHVQRKVNK
EQKGFMKDPPHLKQKYTANEHTSFVEMAKDFIPTLRTLLAHPVYLVYLCVTVIQLNSLIG
MVTYKPKYIEQHFRQSASKANFLMGVINIPAVALGMFSGGLLMKRFKLNIMGAAKFAFST
SLIGYVLSMFFFAMSCENAKVAGVTLSYDSIDEISYDKHSVFAACNKDCVCSSNEWDPVC
GENGITYLSPCLAGCSTYAGSGKNTVFSNCSCVGVGGNLTANTGQCLDKDDCDSMFPYFL
ALSVITSFIISLGGTPGYMLLIRCIKPELKSLALGFHALATRTLAGIPAPIYFGAIIDTT
CLKWGQKKCGGIGACRIYNTTAYRIAYLGLTLSLRTVSFIICIPGFILLGRQLKKEERDA
MHGALSNGGTELEALRKEECVILNSDQPLHPPENSTDRHTRL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggaggacggagctgaagaggaccgcacacgggagaacagaggctgtgatggcacagac
aggcaaagtcacacctctccctgcacaagtctgaggatatttctagtagcattgtccttt
gcttattttgcaaaggctttgtcaggaagctacatgaagagcacaataactcagctggag
agacgctttgacatccccagttacctaataggagtcattgacggtagcttcgagataggc
aatctactggtgatagcttttgtgagttattttggcgccaaactccacaggccaaagatc
attgctatgggttgcgtactgatgtctattgggaccttcatcatcgctctgccccacttt
atcattggacgctatgaatatgaaacgtcagtgcggtgggatgagaattcaacactcagc
ccggcgccttgtcgggcgggtttgccagcagagctgacacaagacggcaaacgccttcaa
gaacaatccacagactgtgaaagtgagtctaatctgtcaatgtggatatatgtactcctg
ggaaatgtcttgcgagggattggagagacacccgtccagcctttggggatctcctacatc
gatgactttactactgaggaaaatgctgcactgtatgttggctgtgtgcagactatctct
gttgttggtcccgtgtttggatatctactgggttccctttgtgccaaaatctatgtggac
attggatttgtcaaaatggagtccattaccatcaccccagctgattcccgctgggtgggc
gcgtggtggctgggatatctcatagctggagtcatcactctactttctgccatccctttc
tggtttctgcctcgctctcttcccgtccctgggccccacgttcagcggaaggtcaataaa
gagcagaaaggcttcatgaaggacccccctcatttaaagcaaaaatatacagcaaatgaa
cataccagttttgtggagatggcaaaggactttattccaactctgcgaactctgctggca
caccccgtgtatctggtctacctgtgtgtgaccgtcatccagctgaactctctcatcggc
atggtcacatacaaacccaagtacatagagcagcacttcaggcagtctgcctccaaggcc
aactttctgatgggagtgatcaatattcctgctgtggctctgggtatgttttccggtggg
ttgctgatgaagaggtttaagctcaacatcatgggagcagccaagtttgctttcagcact
tccctgatcggttacgtcctgtcaatgttcttcttcgccatgagctgcgagaatgccaag
gtggccggggtgacgctgtcatacgatagcatagatgagatctcttatgataaacactca
gtgttcgcggcctgcaacaaagactgtgtttgttcatcaaacgagtgggacccagtttgt
ggggagaacggcatcacatatctttccccgtgtcttgcgggctgcagcacctacgcagga
tcgggaaaaaacacagtcttctctaactgcagctgcgttggggtgggcggtaaccttaca
gccaacacaggccagtgcctcgacaaagacgactgcgactccatgttcccttacttcctg
gctctctccgtcatcacctctttcatcatctctcttggaggaactccaggctacatgctt
ctcatccggtgtattaaaccagagttgaagtctttggcgttgggttttcatgctttggca
acacgcacacttgcaggaatcccagcacccatctactttggagcaatcattgacactacg
tgtcttaaatggggtcagaaaaagtgtggaggtataggagcctgcagaatctacaacacc
accgcctacagaatagcatacctgggactgactctgagcctgcgaacagtttcgttcatc
atctgcatcccaggcttcatcctgctgggtcgacagctaaagaaagaggagcgggacgcc
atgcacggtgctttgtctaacggaggaactgaactagaagcactcaggaaggaagagtgt
gtgattctgaattctgaccaaccactgcatccaccagaaaacagcacagacaggcacacc
cggctgtga
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