Oryzias melastigma (Indian medaka): 112149254
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Entry
112149254 CDS
T07439
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112149254 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112149254 (prpf8)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112149254 (prpf8)
Complex C
U5 SnRNP specific factors
112149254 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
112149254
NCBI-ProteinID:
XP_024132625
Ensembl:
ENSOMEG00000016866
LinkDB
All DBs
Position
LG13:18267752..18283242
Genome browser
AA seq
2354 aa
AA seq
DB search
MAANFPFRGVPPGMPPVVPPGVPPMVPPGVPPVAPPPAPVPDYMSEEKLQEKARKWQQLQ
AKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLK
LLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDTEEDAAVVEWLYEHQPLKDTSKYVN
GTTYRRWQFTLPMMSTLYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEP
LVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIK
TEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDNTANG
IALLWAPRPFNLRSGRTRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKH
RPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYN
FNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYI
FAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFM
RGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGI
KQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERI
RRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRR
FSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRI
KRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIK
PADTEPPPLLVYKWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIV
DHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEM
AGSPQMPNDFLSFQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPN
NENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKD
NPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFH
NRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKI
GLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEE
DQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIGQNRRLTLEDLEDSWDRGIPRINT
LFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGV
EGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPT
INRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQEL
DALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYW
IDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPG
SKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVD
DTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKT
AEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEK
FGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTI
TEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQ
QRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAA
NLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKE
IRCIVMVPQWGTHQTVHLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMA
DNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQM
LLSDRFLGFFMVPGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQ
EGEIYNADREDMYG
NT seq
7065 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaactttccattcagaggggtccctcccgggatgcccccagttgttccccct
ggtgtacccccgatggtacctccaggcgtacccccagttgcccctcctcctgcgccagtt
ccagactacatgtctgaagaaaaacttcaagaaaaagcacggaaatggcaacagctacaa
gccaagcgctatgctgaaaagaggaaatttggctttgtggatgcccagaaggaggacatg
ccacctgagcacgtgcgcaaaatcatcagggatcacggtgacatgaccaacagaaagttt
cggcatgacaaaagggtctaccttggcgctctcaagtatatgcctcacgctgtgctgaag
ctgcttgaaaacatgccgatgccctgggaacagatccgtgatgtgccggtcctttaccac
atcactggtgctatttcctttgtcaatgaaattccttgggtcatagagccagtctacatc
gctcagtggggcacaatgtggatcatgatgcgtcgtgagaagcgcgatcggcggcacttc
aagagaatgcgcttcccacctttcgatgatgaggagccaccgctcgattatgccgacaac
attcttgacgtggagcccctggaagccatccagatggagcttgatactgaggaagatgcg
gccgtggttgagtggttatatgaacaccagcccctcaaagacacttccaaatatgtgaat
ggaaccacttatcgtcgatggcagttcacgctgcccatgatgtcaacgctgtatcgtctg
gccaatcagcttctgacagacctggtggatttcaattatttctacctgttcgacctcaag
gctttcttcacatccaaagctctaaacatggccattccaggagggccaaagtttgagccg
cttgtcagagacatcaacctccaggatgaagactggaatgagtttaatgacatcaacaaa
atcatcatcagacaacccataaggacggagtacaaaattgcattcccttacctgtacaac
aacttgcctcaccacgtgcatctcacctggtaccacaccccaaatgtggtgtttatcaaa
acggaggatccagatcttccagcgttctactttgatccgctgatcaaccccatttcccac
agacattctgtcaagagtcaggagcctctgcctgatgacgacgaggagtttgaactccct
gagtttgtggagccgttcctcaaagagacccccctttacacagacaacactgccaacggc
attgctctgctttgggctcccagacccttcaaccttcgctctggccgcactcgccgtgcc
attgacatccctctcatcaagaactggtacagagagcattgtccagcaggacagccggtg
aaagtgcgtgtgtcgtatcagaagctgctgaaatactacgtcctcaatgctctcaaacac
agaccaccaaaggcacagaagaagaggtatttgttccgttccttcaaagccaccaagttt
tttcagtctacaaagttggactgggtggaggtgggcctgcaggtgtgcagacagggctac
aacatgctcaatctgctaatccaccgtaagaacctcaactacctgcatctggattacaac
ttcaacctgaagcctgtcaagacactgaccacaaaggagcgaaagaagtcccggttcggc
aacgccttccacctgtgcagagaggtgctgcgtctcagcaagctggtggtggacagccac
gtgcagtacagactgggaaatgtcgacgctttccagttggccgatggactgcagtacatc
tttgctcacgttggacagctaaccggcatgtaccgctacaagtacaagctgatgagacag
atcaggatgtgcaaagacttgaagcatctcatctactatcggttcaacactggccccgtg
ggtaagggtccaggttgtggattttgggctcctggctggagggtgtggctcttcttcatg
agaggcattactccactgttagagagatggctgggaaatctgctggccaggcagtttgaa
ggacgtcactctaagggtgtcgccaagactgttaccaagcagcgtgtggagtcccacttt
gacctggagttgcgtgctgcagtgatgcatgacatcctggacatgatgcctgagggcatc
aaacagaacaaagccagaaccatcctgcagcacctcagcgagtcctggagatgctggaaa
gcaaacattccctggaaggtgcccggtcttcctacgcccatcgagaacatgattctgcgc
tacgtgaaggccaaagctgactggtggaccaacacggctcactacaaccgtgagcgaatc
cgcagaggagccaccgtggacaagactgtgtgcaaaaagaacctgggccggctgacgcgt
ctgtacctgaaggcagaacaggaacgacagcacaactacctgaaggatggtccctacatc
acagcagaagaagctgttgccatttacaccaccactgtgcactggctggagagtcggcga
ttctcccccattccattccccccgctgtcgtacaaacacgacaccaagctgttgatcctg
gctctggagaggctcaaagaggcctacagtgtgaaatctcgtctgaatcagagtcagagg
gaggaactcggcctgatcgagcaagcctacgacaaccctcatgaagctctttccaggatc
aaacgtcacctgctcacccagagagccttcaaagaggttggtatcgagttcatggatttg
tacagccacctggtgccggtgtacgatgtggaaccgctcgagaaaatcacagacgcatac
ctggatcagtacctatggtacgaagcggacaagagacgcctgtttccaccatggatcaaa
cctgctgatactgaaccacctccacttttggtttacaagtggtgtcaaggcatcaacaac
ttgcaggacgtgtgggaaactgcagagggagagtgcaacgtgatgctggagtctcgctat
gagaagatgtacgagaagatcgatttgacattgctgaacaggttactgcgccttattgtt
gaccacaacatcgctgattacatgacggccaagaacaacgtggtcatcaactacaaagac
atgaatcacaccaactcttacggcatcatcagaggtctgcagtttgcttcgttcatcgtg
cagtactacggcctggtgatggatctgctggtccttggtctgcaccgcgccagtgagatg
gccggctctccacagatgcccaacgacttcctcagtttccaagacaccgctaccgagtcc
gctcacccgatccgactgtactgccgctacatcgaccgcatacacatcttcttcaggttc
tccgctgatgaagctagagacctgattcagagatatttgacggagcatccggaccccaac
aatgaaaacatagtggggtacaacaacaagaagtgctggccccgtgacgcccgcatgaga
cttatgaagcatgatgtcaaccttggacgtgcggtgttctgggacatcaagaaccgcctg
cccaggtctgtgaccacggtgcagtgggagaacagctttgtgtccgtttacagcaaagac
aaccccaacctgctcttcaacatgtgtggattcgagtgtcgcattctccctaagtgccgc
accagctatgaggaattcacccacaaggatggagtctggaacctgcagaacgaggtaacc
aaagagaggacggcgcagtgtttcctccgtgtggatgatgagtcgatgcagcgtttccac
aaccgagtgcgtcagattctgatggcttctggatccaccactttcaccaagattgtgaac
aagtggaacacggctctgatcggcctcatgacgtacttccgcgaggcggtggtcaatact
caggagctgctggaccttctggtgaaatgtgagaacaaaatccagacgcgtatcaagatc
ggcctcaactccaaaatgccgagccgcttccctcccgtggtcttctacacccccaaagag
ttgggcgggctcggcatgctgtccatgggtcacgtcctcatcccacagtcggacctgcgg
tggtccaagcagaccgacgtgggcatcacccacttcaggtctggaatgagccacgaagaa
gaccagctcattcctaacttgtatcggtacatccagccgtgggagagcgagttcatcgac
tctcagagagtttgggccgagtacgccctcaaaagacaggaagctatcggtcagaacaga
cgtctgactctggaggatttggaggactcctgggacagaggaatccctcgcatcaacacg
ctttttcagaaagacagacacactctggcctatgacaaaggttggagagtcaggacagat
ttcaagcagtatcaggttttgaagcagaatccgttctggtggactcaccagaggcatgat
gggaaattgtggaacctgaacaactaccgcacagacatgatccaggctctgggtggtgtg
gagggcattctggagcacacgctcttcaaaggcacttacttccccacgtgggagggtctt
ttctgggaaaaagccagtgggtttgaggaatccatgaaatggaagaagctgaccaatgct
cagagatctggtctcaaccaaatccccaaccgtcgcttcaccctgtggtggtcacctacc
atcaacagagccaacgtgtacgttggtttccaagtccagcttgacttgacaggaatcttc
atgcacggaaagatccccacgctgaagatctccctcattcagatcttcagagctcacttg
tggcagaagattcatgagagcattgtcatggatctctgtcaagtgtttgatcaggagctg
gacgcactggagattgagacagtgcagaaggagaccatccaccccaggaagtcctacaaa
atgaactcgtcctgtgcggacatcctcctctttgcatcatacaagtggaatgtgtctcgg
ccatccctgcttgctgattcgaaagacgtgatggacagcaccaccacacagaaatactgg
attgacatccagctgcgatggggagactacgactcccatgacattgagcgctacgccagg
gccaagtttttggactacaccacggataacatgagcatctacccctcccccaccggcgtt
ctcattgccattgacctggcttataacctgcacagtgcttatggcaactggttccctgga
agcaagccgctgatccagcaggccatggccaagatcatgaaggccaaccctgctctgtat
gtgctcagagagcgcattcgcaaaggcctgcagctgtactcctctgagcccaccgagccc
tacctgtcctcgcagaactacggcgaactcttctccaaccagatcatctggtttgtggat
gacaccaatgtgtacagagtcaccatccacaagacgtttgaggggaacttgaccacaaag
cccatcaatggagccattttcatcttcaaccccaggactggtcagctcttcctgaagatc
atccacacctctgtgtgggctggacagaagcgtctgggacagttggctaaatggaaaacg
gctgaagaagttgctgctctgatccgctccctccctgtggaggagcagcccaagcagatc
atcgtcaccagaaagggcatgctggaccctctggaggtccacttgctcgacttccccaac
atcgtaatcaaaggttctgagctgcagctgcccttccaggcctgtctgaaggttgagaag
tttggagacctgatcttgaaggccacagagcctcagatggtgctgttcaacctctatgat
gattggctgaagaccatctcctcctacacggccttctcccgactgatcctgatcctcaga
gcgctccacgtcaacaacgaccgcgccaaagtcattctgaagcccgacaaaaccaccatc
acggagccgcatcacatctggcccacgctcactgatgaagagtggatcaaggtggaagtg
cagctcaaagatctcatcttggctgattatggcaaaaagaacaatgtgaacgtggcctct
ctgacccagtctgagatccgtgacatcatcctgggcatggagatctccgctccgtcacaa
cagcgccagcaaatcgccgagatcgagaagcagaccaaagagcagtctcagctcacggcc
acacagactcgcaccgtcaacaagcacggagacgaaatcatcacctccaccacctccaac
tatgagacccagaccttctcttccaagactgagtggagagtccgggctatatctgctgca
aacctccatctccgtactaaccacatctacgtgtcgtctgacgacatcaaggagactggc
tacacctacattctgcccaaaaacgttctcaagaagttcatctgcatctccgatcttcga
gcgcagattgctggctacttgtacggcaccagccccccagacaaccctcaagtgaaggag
attcgatgcatcgtcatggtgcctcagtggggaacccatcagaccgtccaccttcccaac
cagctccctggtcacgaatacctaaaggaaatggagccactcggctggatccacactcag
cccaacgagtcgcctcagttgtccccacaagatgtgacgacccacgccaagatcatggcc
gataacccgtcttgggatggagaaaagaccatcatcatcacttgcagcttcacaccgggc
tcctgtacgctcacagcatacaagttgacacccagtgggtacgaatggggtcgccagaac
acagacaagggcaacaacccaaaaggttatctgccatctcactatgagcgagtacagatg
ctgctctctgaccgattcctgggcttcttcatggttcctggccaagtctcctggaactac
aacttcatgggcgtgcgccacgacccgaacatgaagtacgacctgcagctggctaacccc
aaagagttttaccacgaagtccatcgaccgtcgcacttcttaaactttgcgtcgctgcag
gagggcgagatctacaacgctgaccgcgaggacatgtacggttga
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integrated database retrieval system
