Oryzias melastigma (Indian medaka): 112149286
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Entry
112149286 CDS
T07439
Symbol
rffl
Name
(RefSeq) E3 ubiquitin-protein ligase rififylin
KO
K20804
E3 ubiquitin-protein ligase RNF34 [EC:
2.3.2.31
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112149286 (rffl)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
112149286 (rffl)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
112149286 (rffl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF34L-like_3rd
SAP_RNF34_RFFL
zf-C3HC4_3
FYVE_CARP1-2
ARMET_C
Prok-RING_4
zf-RING_5
FYVE_2
Motif
Other DBs
NCBI-GeneID:
112149286
NCBI-ProteinID:
XP_024132677
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All DBs
Position
LG13:435615..440833
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AA seq
339 aa
AA seq
DB search
MFASCCNWLCMDTAEGGAAEHQAYTNSAFSGSQPPSPEHGCTACGGRFDTPAKKHTCADC
KKSYCSRCSAHIGPRPRLCHTCQPFYGNQLERAELMKLRVKDLREYLCLHEVPTHLCREK
EELVDLVLGQQSSPSSSSAPETPVTEAPSMTFDPPDLASDPAPHTSTSPPPTPPSPPDPH
PAEPEAPPPVPETAPPEPVLQDEDQMWDGEEAPASGRRASLSDLSGPEDIEALSVRQLKE
ILARNFVDYKGCCEKWELMERVTRLYQDQQNLLEVTSAGTADGAAAQEEHLCRICMDSPI
DCVLLECGHMVTCTKCGKRMSECPICRQYVIRAVHVFRS
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcgtcctgctgtaactggttgtgcatggacacggctgaagggggcgccgcagag
catcaggcctacaccaactccgccttcagcggcagccagccgccgtcgccggaacacggc
tgcacggcctgcggggggcgcttcgacacgcccgctaagaagcacacctgtgccgactgc
aagaagagctactgcagccgttgctccgcccacattgggccccggccccgcctctgtcac
acctgccagcccttctacgggaaccagctggagcgggcggagcttatgaagctacgggtg
aaggacctccgggagtacctgtgccttcacgaggttcccacgcacctgtgccgagagaag
gaggagctggtggatctggttctgggtcagcagtcctcgccttccagcagctccgccccc
gagacccccgtcacagaagccccctcgatgacctttgaccccccggacctggcctcggac
ccggctccccacacctccacatcccctccccccacgccgccctcccccccagacccacac
cctgctgagcctgaagccccgcctcctgtcccagagacggcgccgcccgagcccgtcctg
caggatgaggatcagatgtgggacggcgaggaggcgccggcgtctggccgccgcgcctcc
ctgtcggacctgagcggcccggaggacatcgaggcgctgagcgtgcggcagctgaaggag
atcctggcccggaactttgtggactacaaaggctgctgtgagaagtgggagctgatggag
cgggtgacccggctgtaccaggaccagcagaacctgctggaggtgacctcggccggcact
gcagacggcgccgccgctcaggaggagcacctgtgccggatctgcatggactcccccatc
gactgcgtgctgctggagtgcggtcacatggtcacctgcaccaagtgcggcaagcggatg
agcgagtgtccgatctgccgccagtacgtcatccgagcggttcacgtcttccggtcctga
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