Oryzias melastigma (Indian medaka): 112149302
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Entry
112149302 CDS
T07439
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04270
Vascular smooth muscle contraction
oml04625
C-type lectin receptor signaling pathway
oml04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112149302 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
112149302 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
112149302 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112149302 (arhgef12a)
Membrane trafficking [BR:
oml04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112149302 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
112149302
NCBI-ProteinID:
XP_024132705
LinkDB
All DBs
Position
LG13:17181151..17239331
Genome browser
AA seq
1434 aa
AA seq
DB search
MSDTQSNFTNRFNVKPVRTSSILSKDHPPDKKPKSDKSSLPSNEFDPTDALVLQKSGNNS
VLAEGKPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIK
VNGTLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLPQIPLAESEPDMLGVSISSPNSPAA
ERPTSPQDQLSASQQTWEENSSLCAHSTDFLQKKKEHQDLQEEYDRNPSPKLLKDIQEAK
KHIPQLQGQICKATGTTQKILSAGDANDGSVPETEHALSTKGDSSIEMSWANNPSSRMFG
SGSSDNQYQKESYCPSPKSTPRNSFNSCHSPEAEDTTDLNSFSPTTVSSPSSSRLASQII
GAEDDYFGSDHEQTNGQCNSFNSIEQLKSRPAHLAAFLHHVISQFDPAPVLCYLYADLFK
QTNPKETRRVFMDLNNFFIDRAAHLKVLVPESVSSDLDRRRMELVPEEIIRQHVQTLQDS
LLPEIQKNLEDFRQKRSMGLTVAEAELTRLDQERVRDRVTLERERSYADNIITKIEEILS
STQTTEEEKSTAIQDVIYAYMKHLGVRAREPRNLESKWGRKSFLPKIKKSMKAEKDGDDK
VKKSRFPILGPQRRPSRIEAASKGQDSRPRPQKQLSQPALGTSEQTEVGRLRGSQSSEGS
ELTHSLSLNSYSPTSTAYSYDASRDAETAGTTTPCSSRLSDGLPSDSLDGLSYPSSHLNL
YNLDQLQEDDRESDRTHDGTPKAIRKLEGLSAADVQSEDDQGTDSEHDPPNWQQLVGRDV
LAGLSPHEIKRQEVIHELFYTERAHVRMLRVLDNVFYQKLSKDAILPLADIKSIFTNLGE
VLQLHAQILEHMTTVRKRNESSVIDQIGDDLLSWFSGAEEEKIKQAVGTFCSNQPFALEI
IKNKQKKDSKFTSFIQEAESNRLCRRLQLKDIIPVEVLRLTKYPLLLDNIVKYTDNAVEK
EKAKQAADSCRKILIHVNQAVKESEDKQKLEDYQRRLDLSSLKQTDNPTILELKNLDLTK
KTMVHEGPLLWKVNKDKTIELFTLLLEDILVLLQKQDERLILKCHSKNLPGTTDNKQIFS
PIIKLNSVLVRSVATDLKSFFILSMSDSGAQIYELMAPTVTDQKTWQSLISQRADPMKVK
PHSVIPLPQSDGERDGVEIITAGVSRLSRELDRTSTGSTQSADKESSPVSRGVLQRSLPS
GNPFEEAKEDEEDDGEEGFVDPGLPYQVAEEPREGDSFDVFPSRADEALKTLAALKQVLV
TQLMSQGAAEQTKRSTGVRLLRTTSLRTPIDSRSKVMVHNGSEKMSSQTEDLGQDLGSGD
TGFFDSPDDYGCLVLGGYGGPGESSTDDDILASTTGKQLSTSRGCAADSGINLRFSSASQ
AGSLSTFSRQVLSHLRSLQTNLNYLKEVEVKYNNLVRQRPERSAADLDGNKDKR
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacacacagtccaacttcactaacaggtttaacgtgaaaccagtcagaaccagc
agcattctcagtaaagaccatcccccagacaagaagcctaaaagtgacaaatcttcactt
ccctcaaatgaatttgaccccacagatgctctggtgctgcagaagagtggcaacaacagt
gtgcttgcagaggggaagcctgagtcctgtggcttggtacaacgatgcgtgatcatccag
aaagatgaaaatggctttggactcaccgtcagtggtgacaacccggtgtttgtgcagctt
gtcaaagaagatggagctgcaatgcgagcaggtgttcagacaggcgacaggatcatcaag
gtcaacgggacccttgttacacattctaatcacattgaagtggtgaaactcatcaaatct
ggctcctatgtggccctcaccgtcttgggacgccctccggggctcccccagatcccttta
gcagaatcagaacctgacatgttgggtgtcagcatatcttctccaaattctccggcagct
gaacgcccaaccagccctcaggaccaactctccgcctcacaacaaacatgggaggaaaat
agcagtttatgtgcccacagcacagacttcttgcagaagaagaaagagcaccaggacctt
caggaggagtatgaccggaacccctcccccaaactactgaaagacatccaggaagctaaa
aaacacattcctcagctgcagggtcagatctgcaaggccactgggacaacacagaaaatt
ctctcagctggtgatgcaaatgatgggagcgtaccagaaacggagcatgcactttccacc
aaaggagacagcagcatagagatgtcctgggctaacaatccttcatctcgcatgtttggg
tcgggatcttcagataatcagtatcagaaagagtcctactgtcccagcccaaagagcacg
cccaggaacagctttaactcctgccattccccagaggcagaggacaccactgatctgaac
tccttctctcctactactgtcagtagtccctcctcttctcggcttgcctcccaaatcatt
ggagctgaagatgactattttggttcagaccatgagcagacgaacggccagtgtaacagc
tttaatagtattgagcagctcaagtctcgccccgcccaccttgcagcttttttgcatcac
gtcatctctcagtttgatccagctcctgtgctttgctacctctacgctgacttatttaaa
cagaccaaccccaaagagaccaggcgggtgttcatggatctcaataacttctttatagac
cgggcagcgcatttaaaagttcttgttcctgaatctgtttcctctgatctcgatcggcgg
cggatggaactagttccagaagaaattatcaggcaacatgttcaaacactgcaggactct
ctgctccctgaaatccagaagaaccttgaagacttcaggcagaagcgaagtatggggctg
acggtggcagaagctgaactgacccgactggatcaagaaagagtccgagaccgcgtcact
ctggagcgcgagcgttcatacgccgacaacatcatcaccaagatagaggaaattctatca
agcactcagaccacagaggaagagaaaagcactgcaattcaggatgttatctatgcatac
atgaagcaccttggggtgagggctcgggaaccccgcaatctggagtccaaatggggccga
aagagctttcttcctaaaattaagaaaagcatgaaggcagaaaaagatggagatgataaa
gtgaaaaaaagcaggtttcccattctcggacctcagcgccgacccagccgtatcgaagca
gcaagtaaaggtcaagacagtcgcccccgaccccagaaacaactgtcccaacctgcacta
ggaacaagcgagcagacggaagtcggtcgtctcaggggcagccaatcaagcgaaggctcc
gaactcacgcactcgttgtctttaaactcctactctccaaccagcaccgcctacagctac
gacgcaagccgggacgccgaaaccgctggaacaacgacgccatgctcttccagactcagt
gatggccttccgtctgactccttggatggtttgtcatatccttcctcacacttgaacttg
tacaacctggaccagctgcaggaggacgacagagaaagcgacagaactcatgacgggacg
ccaaaggctatcagaaaacttgagggactgagtgcagctgatgtccagagtgaggacgac
caaggtacagactctgaacacgatcctccaaactggcagcagctggtggggcgagacgtc
cttgcaggactcagtcctcatgaaatcaaaagacaggaagttattcacgagctgttttac
accgagcgcgcacacgtgcgcatgctgagggttctggacaatgttttctatcagaagctt
tccaaggatgcaatacttcccctcgccgacatcaagagcatcttcaccaacctcggagag
gttctgcagctgcacgcacaaatcctggagcacatgacaactgttcggaagagaaatgaa
tcctccgtcattgatcagataggggatgatttgctgtcctggttcagtggtgcagaggag
gagaagatcaaacaagcagtggggacgttctgcagcaaccagccgtttgctctggagatt
atcaagaacaagcagaagaaagactcaaagttcacatccttcattcaggaggcggaaagt
aaccgactgtgtcgccgcctgcagcttaaggacatcattcctgtggaggtgctccggctc
accaagtaccccctgctgctcgacaacattgtcaagtacacagacaatgctgtggagaag
gaaaaagccaagcaggcagcagacagctgcaggaagatcctcattcatgtcaaccaggct
gtgaaggaatctgaggacaagcagaagttggaggactatcagagaagactggacctgtct
tctttaaagcagactgacaacccaaccatccttgagctaaagaatctggatctaaccaag
aaaacgatggtccatgagggtcctctgttgtggaaagtgaataaggacaagacgattgag
ctcttcactctcctcctggaggacattctggttctgctgcagaaacaagacgagcgtctg
atcctcaagtgtcacagcaaaaaccttcctggaaccacagacaacaaacagatcttcagc
ccaatcatcaaactcaacagcgtgctcgtgcgctctgtggcaaccgacttgaagtccttt
ttcattctctccatgtcggacagcggcgcccagatctacgagctgatggcgcccacagtc
acggatcagaaaacgtggcagagtctgatctcgcaaagagcggatccaatgaaagtcaag
cctcacagcgtcataccgttacctcagtctgacggggagagagacggcgtggagatcatc
acagcaggagtttctaggctgagtagagagctggaccgcacgtccaccggcagcactcag
tctgcagataaggagagcagtcccgtttctagaggtgtgctgcagagatccctccctagt
gggaatccgtttgaggaggcgaaggaagacgaagaagacgatggagaggaaggcttcgtc
gatccaggacttccctaccaagttgcagaggaacccagagaaggagactcgtttgatgtg
tttccctcgagggcggatgaagctctgaagacattggctgcattaaagcaggtgttggtg
acccagctgatgtctcaaggagcggctgagcagaccaagcgctccacgggagtccgcctc
ctcagaaccacctctctgcggaccccaatagacagccgctccaaggtgatggtccacaac
ggctcggagaagatgagctcacagacggaggacctgggtcaggacctggggtcgggagac
accggcttcttcgactcccccgacgactacggttgcttagtcctggggggctacgggggt
ccgggggagagcagcactgacgatgacatcttggcgtccactacagggaagcagctgagc
acctcgcgaggctgcgccgccgactctggcatcaacttgaggttctcctcagcgtctcag
gctggcagcctctcgacgttcagcaggcaggtgctgtctcaccttcgaagtcttcagacc
aacctcaactatttgaaggaggttgaggtcaagtacaataatctagtacgccaaaggccg
gagaggtcagcagcagacctggatggaaacaaagataaaagatag
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integrated database retrieval system
