Oryzias melastigma (Indian medaka): 112149428
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Entry
112149428 CDS
T07439
Symbol
usp16
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 16
KO
K11844
ubiquitin carboxyl-terminal hydrolase 16/45 [EC:
3.4.19.12
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112149428 (usp16)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oml01002
]
112149428 (usp16)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112149428 (usp16)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
112149428 (usp16)
Peptidases and inhibitors [BR:
oml01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
112149428 (usp16)
Ubiquitin system [BR:
oml04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
112149428 (usp16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
Motif
Other DBs
NCBI-GeneID:
112149428
NCBI-ProteinID:
XP_024132863
Ensembl:
ENSOMEG00000001972
LinkDB
All DBs
Position
LG13:8452776..8457579
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AA seq
831 aa
AA seq
DB search
MGKKRGKDRSSRGDEDDFELTVPSCRHIKTGADQSLLKKLSGISDWTNCQDCKHEENKEN
DNTTLQQDSEEEKEPAGIWMCLKCGHRGCGRNSENQHAIKHYETPRSSPHCLVISLDNWS
VWCYICDDDVQYSRTGHLAQLVTNIKKQSGADPVKRPEKKVKDEASVLEAKENSETANTE
NKSENKENSSNKNKNIMKERAEKTQNCITTEGNVVIPVKGLSNLGNTCFFNAVIQNLSQT
QLLRETLNKVTGEKLNLDIKPASLDLEPIVVTLEQPGSLTLAMCHLLNEIQLSKKGVVTP
RELFTQVCKKAPRFKGFQQQDSQELLRYLLDGMRAEEQKRVNAGIMEALKLANEDADGDQ
LKTVAKGEXPGLCLDCFFGGEMTSTIMCQQCKTVSVVTEMFLDLSLPVVDEAYRKKNQRK
GAQKNSESSQDGQSSPAPTSRNDDGDVPTAGSSKYQQKKAKKQAKKQAKQQKRQQKLDSR
VTLDSLTDNTENEQTNADVDAEETANDEEQEEPSASDPNPDATSVSEQDKSVEPEEDSLT
TSSSATNRFTVLSDEQHSQERILNDEMSNEEEDDAQLVNEMEKVTLDEAFIEDSEAADQN
MESEDEVLDAKEYTVVNQDPELAFSTLATRTAPEKQECSVQSCLFQFTEVETLTLTNSLL
CVTCTKQQQKKNRSDGPKKNVYTDALKQMLISSPPAVLTLHLKRFQQNGYTICKVNRFVH
FPLILDLAPYCAAKCKDNINDSSNKEETGVLYSLYGVVEHSGTMRSGHYTAYVKVRPNRS
KTLSNGLSAVSGLPEPSTGSWFHISDTSVQPVSESKVQSCQAYLLFYERVL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaagcggggtaaagacaggagctccagaggggatgaggacgactttgaacta
accgttccatcctgtaggcatatcaagactggggcagaccaaagtctgttaaagaagctc
tctgggatctctgactggacgaactgtcaggactgtaagcatgaagagaataaagaaaac
gacaacacaactctgcagcaggactctgaagaggaaaaggaacctgcaggcatttggatg
tgcttgaaatgtggccataggggatgtggaagaaactctgagaaccagcatgcaatcaaa
cattatgaaactccacggtcaagtccgcattgcctagtgatcagtttggacaactggagt
gtttggtgttatatttgtgatgatgatgttcagtactcgagaaccgggcatttagctcag
ctggtgactaacataaaaaagcaaagtggtgcagaccctgtgaagagaccagaaaaaaaa
gtgaaggacgaagcgagtgttttggaagccaaggaaaactctgagaccgcaaacacagaa
aacaagagcgagaataaagagaacagcagcaataaaaacaagaacatcatgaaggaaagg
gctgagaaaacacaaaactgtatcacgactgaaggaaacgttgtcattccggtgaaaggc
ctaagcaaccttggaaacacttgtttctttaatgctgtcattcagaatctttcccaaact
caacttttaagagaaactctcaacaaagtgactggagaaaaactaaatctggacatcaaa
cctgcatctttggatctggaacctatcgtggtgactttagagcaacccggatctctgacg
ttggcaatgtgtcacctgctgaatgagatccagctgtccaagaagggtgtggtaacacca
cgagagttattcacacaagtgtgtaaaaaggctcccaggttcaaaggatttcagcagcag
gacagtcaggagctgctgcgctacctgctggatgggatgcgggctgaagagcagaagaga
gtaaacgcaggaataatggaggcgttgaaactggcaaatgaagatgcagatggagaccaa
ctgaaaacagtagcaaaaggtgaataacctggtctgtgtcttgactgtttttttggaggc
gagatgaccagcactataatgtgtcagcagtgtaaaacggtctctgtagtcactgagatg
tttctggatctttcccttcctgttgttgatgaggcatacaggaagaaaaaccaaagaaaa
ggagctcagaagaacagcgagtcgagccaagatggtcaaagcagtcccgctccgaccagc
agaaacgatgacggcgacgttcccacagcgggcagcagcaagtaccagcaaaaaaaggca
aagaagcaggcaaagaagcaagcaaagcaacaaaaaaggcagcagaagcttgatagcaga
gtgactttggacagtctgacggacaacacggaaaacgaacaaacaaacgctgacgtggat
gcagaggaaacggctaacgatgaagagcaagaagaaccctcagcaagtgacccaaaccct
gatgccaccagtgtgtctgaacaggataagagtgtggagccagaagaagactcgttaaca
acatcatcttctgccactaaccgttttacagtcttgtcagatgagcagcactctcaagag
agaattttaaacgatgaaatgtccaacgaagaagaggacgatgcccaactggtgaacgaa
atggagaaagttactcttgacgaagctttcatagaagactctgaggctgcggaccaaaac
atggagagtgaggatgaagtgttggacgctaaagagtacacagtcgtcaaccaagaccct
gagttggccttcagcacgctggcaaccaggacggctccggagaagcaggagtgctccgta
cagtcgtgcctttttcagttcacggaggtggaaacgctcacgctgaccaacagtctgctg
tgtgtcacgtgtactaaacagcagcagaagaaaaacagaagtgacggacccaagaagaat
gtttacaccgatgccttgaagcagatgttgatctcctctccaccagctgtccttaccctt
catctgaaaagatttcaacagaatggatacactatttgtaaggtgaacagattcgttcat
tttccactgattctggatcttgctccttattgtgctgccaaatgcaaagataatatcaat
gactcttctaataaagaagaaacaggagttttatacagtttgtatggtgttgtagagcac
agtggaacaatgaggtcgggtcattacacagcctatgtgaaagtccggccaaaccgttct
aaaactttatccaatggattatcagctgtttctggacttccagagccttccacgggatcc
tggtttcatatcagcgacacaagcgtccagcctgtgagcgaaagtaaagtccagagttgc
caagcctacctcctcttctatgaacgagtcctttaa
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