Oryzias melastigma (Indian medaka): 112149486
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Entry
112149486 CDS
T07439
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
112149486 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112149486 (supt5h)
03019 Messenger RNA biogenesis [BR:
oml03019
]
112149486 (supt5h)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112149486 (supt5h)
RNA polymerase I system
112149486 (supt5h)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
112149486 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
GPKOW_C
SH3_KIN17_C
KOW1_SPT5
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
112149486
NCBI-ProteinID:
XP_024132967
LinkDB
All DBs
Position
LG13:1192089..1198080
Genome browser
AA seq
773 aa
AA seq
DB search
MIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSLGGEVSHDGDFMIFEGNRY
SRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKEREHNLQAGDNVE
VCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVKVIAGRYEG
DTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGELVQLDPQTV
GVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDIVKVIDGPH
SGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAPMSP
RISSPMHHGGGGAQQRGGGGGGMGRGRGRRDNELIGQTVRICQGPYKGYIGVVKDATEST
ARVELHSTCQTISVDRQRLTTMGAKRHSGMTSTHGRTPIYGSQTPVYGSGSRTPMYGSQT
PLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFGFDDEPSPSPQGY
GGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSYQPSPSPQSY
HQVVPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSN
IEQGSSDWVTTDILVRVKDSFMDLMGQMGVIRSVTGGMCSVFMQESEKVVSISSDQLEPV
TPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGRLEH
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgattcctcggatagatctggaccgcatcaaggccaagatgagtctgaaagactggttt
gccaagaggaagaagttcaagaggccggcccagaggctgttcgatgctgagaagatcagg
tctctggggggcgaggtcagccacgacggagacttcatgatctttgagggcaaccgttac
agccgaaaaggattcctgttcaagagcttcgccatgtctgctgtgatcacagacggcgtg
aagcccacgctctcggagctggagaagttcgaggaccagccggagggcattgacctggag
gtggtcaccgagtcgggtaaagagcgagagcacaacctgcaggccggcgacaacgtggag
gtctgcgagggggagctgatcaacctgcagggcaagatcctgagcgtggacggcaacaag
atcaccatcatgcccaaacacgaggacctgaaggatcctctggagttcccggctcacgag
ctgaggaagtacttccggatgggcgaccacgtgaaggtgatcgccggccggtacgagggc
gacaccggcctgatcgtccgcgtggaggagaacttcgtcatcctcttctccgacctcacc
atgcacgagctgaaggtgctgcccagagacctgcagctctgctccgagacggcgtccggc
gtggacgctggcgggcagcacgagtggggcgagctggtccagctggacccgcaaacggtt
ggcgtcatcgttcgcctggagagggagaccttccaggtgctcaacatgcacgggaaggtg
ctgacggtgcgccaccaggccgtcaaccgcaggaaggacaaccgcttcgccgtggctctg
gactccgaacagaacaacatccacgtcaaggacatcgtcaaggtcatcgacgggccgcac
tcgggccgcgagggagagatccgccacctcttccgaggcttcgccttccttcactgcaag
aagctggtggagaacggaggcatgttcgtgtgcaagacccgacacctggttctggccgga
ggctccaagccgagagacgtgaccaacttcacggtgggggggttcgcccccatgagtcct
cgcatcagcagccctatgcaccacggcggcggaggagctcagcagaggggaggcggcgga
ggaggaatggggcggggccgaggacggcgagacaacgagctgattggtcagacggtccgc
atctgccagggtccctacaaaggttacattggcgtggtgaaggacgccaccgagtccacg
gcccgtgtggagctgcactccacctgccagaccatctctgtggaccggcagcgcctaacc
accatgggagccaagagacacagcgggatgacctccacccacggccgcacccccatttac
ggctcccagacccccgtgtacggctccggctccaggacccccatgtacggatcccagacc
cccctgcatgacggaagccgcacgccccactatggctcccagaccccactgcatgatggg
agcaggacgcccggtcagagcggcgcctgggaccccagcaaccccaacaccccctccagg
aacgacgaggagtacgacttcggctttgacgacgaaccctccccctccccccagggctac
ggcggcacccccaacccgcagacccccggttaccccgaagtcccctcccctcaggtcaac
ccccagtacaaccctcagactccgggcacgcccgccatgtacaacacagagcagtactcg
ccgtacgccgccccctccccgcagggctcctaccagcccagccccagtcctcagagctac
caccaggtggtgccgtcaccggtcggataccaaaacacgcactctccggccagctaccac
cccaccccctcccccatggcgtaccaggccagtcccagccccagccctgttggttacagt
cccatgacgcccggagcgccgtctcctggggggtacaacccccacacccccggctccaac
atcgagcaaggcagcagcgactgggtgaccaccgacatcctggtccgggtcaaagactcc
ttcatggacctgatgggacagatgggggtcatcaggagcgtcacgggcgggatgtgctcc
gtcttcatgcaggagtctgagaaggtggtgagcatcagcagcgatcagctggagcctgtc
acccccaccaagaacaacaaggtgaaggtgatcctgggggaggaccgcgaggcgacgggc
atcctgctgagcatcgacggggacgacggcatcgtgcgcatggagctggacgaccagctg
aagatcctgaacctgaggttcctggggcgcctggagcactga
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