Oryzias melastigma (Indian medaka): 112149564
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Entry
112149564 CDS
T07439
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
oml03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112149564 (brca2)
03460 Fanconi anemia pathway
112149564 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112149564 (brca2)
03036 Chromosome and associated proteins [BR:
oml03036
]
112149564 (brca2)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112149564 (brca2)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
112149564 (brca2)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
112149564 (brca2)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
112149564 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
112149564 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
112149564
NCBI-ProteinID:
XP_024133108
Ensembl:
ENSOMEG00000002481
UniProt:
A0A3B3B7M7
LinkDB
All DBs
Position
LG13:complement(9425285..9443453)
Genome browser
AA seq
2893 aa
AA seq
DB search
MDLPLTNMYNIFKDDVWKALVLELGPLDPNWFEVLTSQASVIDGSLSDQEDLCANQEGNS
KGSLEKPAVESQFFSTPKVFRHSRVVSPQTEDEQSFTLAQEKGALPWIKTQSPCLFQLTI
QGEKCDVFQPQGDDSFDLLATPNQSTISYAKHISESLGAQMNPDISWTSSLNTPPAVPST
LILPIPDNKPCSTNVPADGNVVFVRKLFPSLSKTSANEASKSCDPVAFQGPISPKVPDGP
QTFSNHEECVWQQKVPDTIEDEEVRSSVVDVLDGAEDALSIFFANSSSALRKVKPERNKR
KQILQAKENVCSSKDDLSTSKATSDEERDGCTLSSYTKTGHTGMSQWSPLSLSDIPSCSA
GGIIVPEQLHNSSRLSGPSKDIQNVEFQSKTRLFDTVGIAELDPMRVDSSIEIPYSEELC
IEQLGSSDCSNAEKTEGHKQGQPLGENLVGTVKAKIQDIDMSQLCRDFAQDFSQMPDSGR
TASRDHFSPSACLLAMKKAKQKAEVNPQHHPNKSISNPKFPTSGVPVNDSGFHSAVANST
NITGSSFLENTGLSRTSTDFKSDLQTETDIPSTKAFPKTMHFNPEAEMELISAHTSKEEK
DLEPVMSTDITVQKPSSAQGADDIPSIPLNDQKQTKETSTSPLVVHSLGFKTASNKGIRI
SSASLEKAKLIFKETESETAFYNLPTTSGYDTMNKSTSKEAGNTSTFSSKPSQTSITETF
GGITPQLTASQTDDVTELCSLLEKTDSQFELTPVKILKTKQQNNATSPQKADRELDPDLL
AGIDFDDSFSSDSLQCARNENATYSSKHSSEDEASDDPRKTVRASSPQNVSSVAFKTAGG
KVLRVSDKCLSKAKSLFADLEEFPTNRKSSGNKRVEIGSNTKQKSSMDGCKKNLKFAINE
DSCSIRAGNCFEELASFKKPTKSISGDDTKSSESKKNDPNMCQTGFFMANGKNICVQAKN
MHHAKDIFKDCDVTDNKSEFIKHLPENVKRREHLSKYDNFDIPKRRIDGCSVTENADLLP
CDTIEPHQGILKVETNVAPFHRNSFSASKPDLSMLCSASKTIDSNESCSAAGKKAFVSAD
ETKNSEYLLKETHSPEDGKGQLQEDWSSSNHTDQPRICGFQTAAGKELIVSSAALKKAQT
MFSENEGVKERNRVIPPHSRIPSIESENDKSHALQKAKVCSNISLNAVNPCGNKLKEGPN
NVEKMCSGFTTTNKANEFEENLLKSNHSLKDFDLVSDKEMQESDVFLENHVDAENTVLPK
DQECQLPVYEKIKSNPDQKPTISFSQPGCPEDPPSFQNAGFQMANGKAVTFSAEALRKAK
SVFNECEAPEDNTLQSKATVLQDLVDNKERIHFGFQTAGGAKVHVSKTNLLKAKHLFKDF
DDLVSDKEMQEADVLLKNVDVNAENGVLTKDWECKNPLKEGGNEEVRSNPNQRTTLNFSE
PEDGSSENTKILQNDLLSFQNVGFQTANGKAVTFSSEALRKAKSMFNGCEALEDKTLPTP
LQSNANVLPFRGTTEQNQDIKERIHFGFQTAGGTKVHVSKTNLLKAKHLFKDLDDSVSKA
TEGTDPSSETSSVLSKATGLKDNISKHDQIIAVNAPANGWTESRNVGFQTASGSTVVVSD
EALKRAKTLLGEGEEVANVSSPLCKIPVSGSSGFFAASGKAVTFSSEALQKAKSLFSDIR
ADVSDFTDTKRVEQKQEDAQLWGFTAAGRTKTDTKVADKCHSNIKKLDLNNAKDVSSDVD
LTNLAPSETVVQSENYKLETSQVMDYKRPENTKAEESSALMFPSLNLTGCTETQHRLLAQ
EALDCTKALLEDEDLAGQSFCPAAQTALRLDYPQATTGSDAEEKRQRKRLMGDPDPTGQP
PLKRQLLEEFNQTNDGSNDSGLQPVKSCPLGLMKDRGVFKYSTSLYPNITKPHSNGKTKT
TTTVQHSTPDNSRSAGSKMSPFIPPFYKNANSETSKTSVPQLTTRTPVFAPPFKKQRTVL
QGKTDQNTNKLSPVTESNSSAYVPSSKNAQEPSNVISTVNTHSNDTKNPNVDVNGGSVRF
MSHPDQAFSKDEHQVFLNSELARDMQDMRIRKKKRQNIRPLQGSLFLTKTSGVAKIPLKA
AVNGKLPTRCPPEQLYRRGVHAHVSGITSETAESFRFRLLHFFKRDTFIDEGGVKLADGG
WLIPTKDGTAGKEEFFRALCDTPGVDPKLITEAWGYNHYRWIVWKQASMEKSFPEAMGGI
CLTPEQVLLQLKYRYDVEVDHSRRPALRKITEKDDTAAKTLVLCVCGIVSKGGGASGSRT
PESSDPASAVVWLTDGWYALKAQLDQPLTAMLNKGLLPVGGKLIIHGAQLVGSQDACPPL
EAPESLMLKICANSTRRARWDTKLGFHKDPRPFLLPIASLFSRGGPVGCADVVVLRSYPI
QWMERKADGGVVFRTTRAEEREARRFSEVKHKAMEVLFAKVQTEFENEEKEKTKSQRRKQ
NLDVANLQDGEELHAAVGDDPAYLEAHLSEQQLQTLQAYKRSLMERKQAELQDRYRRALE
EEDQEIKCPKRDVTPVWRLSVADSLGPPSCVYQLSLWRPSSDVESLLKEGGRFKVYNLAA
AEGKKRSSHESVQLTGTKKTQFQVLQTSQEWMSERFQPRVSTDFESLQNPDFRPLCGEVD
LSGYVVSVIDGHGSSPAFYLADGKLNLVKIRCFSSLSQTGLEDVVKPRVLLALSNLQLRG
QSMFPTPVVYAGDLTVFSTNPKEAHLQESLSHLKNRIQRDENFHGNAEEKLSHLIKSGGL
GLVSPMAVKLQTLPSSSDKKDESKITFQKPASFTPVSKNPQAETPLSKKDPKILKRRRAL
DYLSRIPSPPPLSVLGSVSSPCVKKTFNPPRRSGPPSQFKTEKIQTVKPSVVEDEWVNDE
ELVMIDTQALGIK
NT seq
8682 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcccctcacaaacatgtataatatttttaaggatgatgtttggaaagcactt
gttttagagctgggacctcttgacccgaactggtttgaggtgctgacatcacaagcatct
gtgattgatggaagtctttctgatcaagaggatctttgtgctaatcaagaaggaaactct
aaggggagtttagaaaaacctgcagtggaaagtcaattcttctcaaccccaaaagttttc
cgacacagccgagtggtgtcacctcaaactgaggatgagcagtcatttacattagctcaa
gaaaagggagcattgccttggattaaaacccaaagtccttgtttgtttcaacttacaata
cagggtgaaaaatgtgacgtttttcagcctcaaggcgacgacagttttgatttacttgct
acaccaaatcaatctacaatcagctatgccaaacatatctctgaaagccttggtgcacaa
atgaacccggacatttcatggaccagttctttgaatacaccaccagcagttccgtccacc
ttgattttgcctataccagataataaaccttgttcaacgaatgtccctgcagacggaaat
gttgtttttgtccgaaaactattcccttctctttcaaagacatctgcaaacgaagcttcc
aaaagttgtgatccagttgcttttcaaggtccaatctcccccaaagttcccgacggccct
cagactttctcaaaccatgaagagtgtgtttggcaacagaaagttccagacaccattgaa
gatgaagaagttcgaagctcagtagtggatgttcttgatggcgctgaagacgcactttcc
attttcttcgctaatagtagctcagctctgagaaaagtgaagcctgagaggaataaacga
aaacaaatccttcaagcaaaagagaacgtctgcagctcaaaagatgacttgtcaacaagc
aaagccacgtctgacgaagaacgtgatggatgtactctgtcttcatacacaaaaactgga
catactgggatgagccagtggtcgccgctgagtttatccgatatcccatcttgttcagcg
ggtggcattattgtaccagagcagctgcataattcaagtcgcctctcaggaccttcaaag
gacattcaaaacgttgaatttcagagcaaaacgagactttttgatacagttgggattgca
gagcttgatcctatgagagtggactcatctatagaaattccatattctgaggaattgtgc
atcgaacagctgggaagctcagactgcagcaacgctgagaagactgaaggacataaacaa
ggtcaacctcttggagaaaatttggttggcacagtaaaagctaaaatccaagatattgac
atgtcgcaactttgtagagattttgctcaagattttagccaaatgcccgactctggtcga
acggcttctcgagatcacttctcgccgtcagcttgtctcctagctatgaaaaaagcaaag
cagaaagcagaagtcaaccctcagcatcatcctaataagagtatctctaatccaaagttt
cccactagtggggttcctgtaaatgacagcggctttcattccgctgttgcaaactccact
aatatcactggatcatctttcttggaaaatactggccttagtcgaacatctacagatttt
aaatcagatctccaaacagaaactgatattccatcaacaaaagcatttcctaaaacgatg
cattttaatcctgaagctgaaatggagctgatcagtgcacacacatccaaagaagagaag
gacctggaacctgtgatgtccacagatatcaccgtccagaaacccagcagtgctcaagga
gctgatgatattcccagcattccattaaatgatcagaaacagacaaaggaaacatcaact
tctcctcttgttgtgcattcattaggattcaaaactgcttcaaataaagggatacgcatt
tcctctgccagcctggagaaagccaaactgatatttaaagagactgagagtgaaacagct
ttttataatctgcccaccacatctggttatgacactatgaataaaagcacaagtaaggaa
gctgggaacacttcaacgttttcctcaaagccaagtcaaacttcaataacagaaacattt
ggtggcatcacccctcagctaacagcgtctcaaacagacgatgtgactgaactttgttcc
ctcctggaaaaaaccgacagccagtttgaactgacacccgtcaaaattctaaaaacgaag
cagcaaaacaatgccacctcaccacaaaaagctgacagagaactggaccccgatttactt
gctggcatagattttgatgatagttttagttcagattcattacaatgcgcgagaaatgaa
aacgcaacttactcctcaaagcacagctctgaagacgaggcttcagatgatccacgaaaa
acagtacgcgctagctcaccacaaaacgtgtctagtgttgcttttaaaactgctggagga
aaagttttaagagtttcagacaagtgcctaagcaaagctaagtctttgtttgcagatttg
gaggagtttccgacaaatcggaagtcgtcaggcaacaaacgcgtggaaattggttccaac
accaaacaaaaaagcagcatggatggatgcaaaaagaatctgaaatttgctatcaacgag
gacagttgctctataagagccgggaattgttttgaagagttggcttctttcaaaaaacca
acaaaaagtataagcggtgacgacactaaaagctcagagagtaaaaagaatgatcccaat
atgtgccaaactggtttcttcatggctaatggaaagaacatctgtgttcaagccaaaaac
atgcaccacgcaaaggacattttcaaagactgtgatgtcacggacaataaatctgagttt
attaaacatttgccagaaaacgtcaaacgtagggaacacctatcaaaatatgacaacttc
gacatccccaagcgacgcatcgatggatgctctgtgactgagaatgctgatctgctgccg
tgtgatacaatagagccacaccagggaattctgaaagtagagaccaatgtcgctcctttt
catagaaactcattttctgcttcaaagccagatctttccatgctgtgctcggcttcaaag
actattgactctaatgagagctgttctgctgctgggaaaaaagcttttgtgtcagccgat
gaaacgaaaaactctgaataccttttgaaagaaacccactcacctgaagatggaaaagga
caattgcaggaggactggagttcatcaaatcacaccgatcagcccagaatatgtggattt
cagacggctgctggtaaagaacttattgtgtcgtctgcagctctgaagaaagctcagaca
atgttcagtgaaaatgaaggagtcaaagaaagaaacagagttataccacctcattcaagg
attccaagtattgagtcagaaaatgataaatctcatgctctacagaaagctaaggtgtgc
agcaacattagcttgaatgcagttaatccatgtggaaacaaactaaaagaaggaccaaat
aacgtggagaaaatgtgttctggtttcacaactacaaataaagccaatgagtttgaggaa
aatcttttaaaatcaaaccatagtttgaaggactttgatttggtttcagataaggagatg
caagagtcagatgtgttcttggaaaaccacgtagatgctgaaaacacagtattaccaaaa
gatcaggagtgtcaacttcctgtttatgagaaaataaaatctaatccagatcaaaaaccg
actatcagcttttctcaacctggatgtcctgaagacccgccatcatttcagaatgctgga
tttcagatggcaaatggaaaagccgtcactttctcagctgaagctctcagaaaagcaaaa
tcagtgtttaatgagtgtgaagcacctgaggataacactctccaatccaaggccacagtc
ctgcaagacttggttgataacaaggaaagaatacattttggcttccaaacggcaggtgga
gcaaaagttcacgtgtcaaagacaaacttattaaaggcaaaacatctctttaaagacttt
gatgatttagtttcagacaaggaaatgcaagaggcagatgtgttattgaaaaacgttgat
gtgaacgcagaaaatggagtactaacaaaagactgggagtgtaaaaatcctcttaaggag
gggggcaatgaggaagtaagatctaatccaaatcaaaggacaactctcaacttttctgaa
cctgaagatggatcttctgagaacacaaagattctacaaaatgacctgttatcatttcaa
aatgttggatttcagactgcaaatggaaaggccgtcactttctcatctgaagctctcaga
aaggcaaaatccatgtttaacgggtgtgaagcacttgaggataaaacactcccaacacca
ctgcaatccaatgccaacgtcctccccttcagagggacgactgaacaaaatcaagacatc
aaagaaagaatacattttggcttccaaactgcaggtggaacaaaagttcacgtgtcaaaa
acaaacttattaaaggcaaaacatctctttaaagacttggatgattccgtttcaaaagct
acagaagggacagaccccagcagtgaaacatcatcagttttgagtaaagctaccgggctg
aaggataatatttccaaacatgatcaaataatagcagtgaatgcccctgcaaatggatgg
actgagagcagaaatgtagggtttcagacagccagtggaagcacagttgtagtttcagac
gaagcccttaaaagagcaaaaaccctgctgggcgaaggtgaagaagtcgcaaatgtttca
tctcctctctgtaagattccagtctctggttccagtgggtttttcgcagcaagtggaaaa
gctgtgactttctcatcggaggccttacagaaggcgaaaagtcttttcagtgacatcaga
gccgatgtctctgattttacagacactaagagggtggaacagaaacaagaagatgctcag
ctttggggctttacagctgcaggaagaacaaaaacagacactaaagttgctgataagtgt
cactctaacatcaaaaaattggatctaaataatgcaaaagatgttagttcagatgtagat
cttaccaatttggctccatcagagactgttgtccaaagtgaaaactacaaactagaaacc
tcacaggtgatggactacaagagacctgaaaacacaaaagctgaggagtcctcagctctg
atgtttccgtccctgaatctgactggctgcactgaaacccagcacaggcttctggcccag
gaggcgttggactgcacaaaggctttgctggaagatgaagatctggctggccaaagcttc
tgtcctgctgcacaaactgcactaaggctagattacccacaagccaccactgggtctgac
gcggaagaaaaaagacaaaggaaaagattgatgggagatccagatccaactggtcagcct
cctctaaaaagacaattactggaagaatttaaccagactaacgatggttcaaacgactct
ggactccagcctgtgaaaagctgtcctcttggtttaatgaaggacagaggagttttcaag
tacagtacaagtctttatccaaacatcacaaagcctcacagcaacggaaaaaccaaaaca
acaacaacagtacaacattcaacaccagacaacagcagatcagctggttccaaaatgagc
ccgtttattcctccgttttataaaaatgccaactctgaaaccagcaagacgtcggtgcct
caactaaccacgagaacgcctgtgtttgctccaccgttcaaaaaacaaagaactgtctta
caggggaaaacagaccagaatacaaacaagctttctcctgtaacagaatctaacagcagc
gcttatgttccctcctctaaaaacgcccaagaacccagcaatgtcatttctactgtcaac
actcactctaatgatacgaaaaatccaaacgttgatgtcaacggtggatcggtccgtttt
atgtctcatcctgatcaagcattttctaaagacgagcatcaggtttttctgaactccgag
ctcgcgcgggacatgcaggacatgcggatccggaagaagaagcggcagaacattcggcct
cttcaaggcagcctgtttctgaccaaaacctcaggcgtggcaaagatcccgttaaaagct
gcagtgaacgggaaactcccaacaagatgccctccagaacagctttacagacgtggcgtc
cacgcacacgtttcagggatcacaagcgaaactgccgagtcttttcgcttccgtttgctg
cacttcttcaaacgagacactttcattgacgaaggtggggttaagctagcagacggaggc
tggttgattcccaccaaagacgggacagcgggaaaagaggaattctttcgagctttgtgt
gacactcccggtgtggatcctaaactgatcactgaagcgtggggatacaatcactacaga
tggatcgtctggaagcaggcctccatggaaaaatcctttccagaagcgatgggcggcatc
tgtctcactccagagcaggttctgctgcagctgaagtacagatatgacgtagaggtcgac
cacagtcgccggcccgctctcaggaagatcacggagaaggacgacacagcggccaaaacg
ctcgtcctctgcgtttgtgggatcgtctccaaaggaggcggagcgagcggctccaggact
ccagaaagttctgatccagcatctgcagtggtttggctgacagatggatggtacgctctc
aaagcccagctggaccagccgttgactgccatgctgaacaagggcctcctgcctgttgga
ggtaaactgatcatccatggagcccagctggtggggtcgcaggatgcttgtccccctctg
gaagcacccgagtcgctcatgttgaagatttgcgccaacagcaccagaagggctcgatgg
gacaccaaactgggattccacaaagatcctcgaccgttcctgcttccaatcgcttctctg
ttcagccgtggagggccggtaggatgtgctgacgttgttgtactgagaagctaccccata
cagtggatggagaggaaagcagacggaggcgtcgtgttccggacgacccgagcagaagag
agagaggccagacgctttagtgaagtgaagcacaaagcaatggaagtgctgttcgctaaa
gtccaaaccgaattcgaaaacgaggagaaagagaaaaccaaatctcaacgacgaaagcag
aatctggacgttgcaaacttgcaggatggtgaggagctgcatgcagccgtgggagatgac
cccgcttacctggaggctcatttaagtgaacaacagctgcagactcttcaagcctacaag
cgctcactgatggagaggaagcaggccgagctgcaggaccgatatcgccgagctttggag
gaagaagaccaagaaatcaaatgtccaaagagagatgtgactccggtgtggagactcagc
gttgctgactctttgggcccacccagctgcgtttaccagctgagtctctggcggccctcc
tcagacgtcgagtctctattgaaggaaggtggtcgattcaaagtttacaacctcgctgct
gcagaaggaaagaagagaagcagccatgaaagtgttcagctcaccggaaccaagaaaacc
cagttccaggttctgcagacttcacaggaatggatgtcagaacgtttccaaccaagagtc
tccacagactttgagagtcttcagaatccagatttccgacctctatgtggagaggtggat
ctgtcgggatacgtcgtcagcgtcatcgatggacacggttcctctcctgcgttttatttg
gccgacgggaagctgaacttggtgaaaattcgctgcttcagcagcttgtctcaaaccggc
ctggaggacgtggtcaaaccgcgcgtcctgttggcgctgagcaacctccagctcagaggt
cagtccatgttccccactcctgttgtgtacgctggagacctgaccgtcttctccacaaac
cccaaagaagctcacctgcaggaatccctcagccacctgaagaatcggattcagcgtgac
gagaactttcatggaaacgctgaagagaaactatctcatttgatcaaatctggcggcctc
ggtttggtctctccgatggctgtgaagctccaaactctgccttcatcatctgacaaaaag
gacgaatcaaagattacatttcagaaaccggcatccttcactcctgtcagtaaaaaccct
caagcagaaactcctttgtcgaaaaaagaccctaaaatcctgaaaagaagaagagctctg
gactatctgtctcgcatcccctctcctccacctctctcagttctgggctctgtttcatct
ccatgtgttaaaaaaaccttcaaccctcctcggaggtctggaccccccagtcagttcaaa
actgaaaagatccaaactgtaaagccctcagtggttgaagatgagtgggtgaatgatgaa
gaactggttatgattgatactcaggcactgggtatcaagtga
DBGET
integrated database retrieval system
