Oryzias melastigma (Indian medaka): 112149604
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Entry
112149604 CDS
T07439
Symbol
lrfn1
Name
(RefSeq) leucine-rich repeat and fibronectin type III domain-containing protein 1
KO
K16354
leucine-rich repeat and fibronectin type-III domain-containing protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112149604 (lrfn1)
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112149604 (lrfn1)
Cell adhesion molecules [BR:
oml04515
]
Immunoglobulin superfamily
SALM family
112149604 (lrfn1)
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
112149604 (lrfn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_4
LRR_1
LRR_5
fn3
Ig_2
LRR_9
ig
PRIMA1
Ig_DSCAM-DSCAML_C
C2-set_3
Motif
Other DBs
NCBI-GeneID:
112149604
NCBI-ProteinID:
XP_024133176
Ensembl:
ENSOMEG00000005024
UniProt:
A0A3B3BF31
LinkDB
All DBs
Position
LG13:12224240..12408207
Genome browser
AA seq
754 aa
AA seq
DB search
MDRLVLCMLLCAVLVKGHNCPGRCICQHLSPTLTLLCAKTGLLFVPPTIDRKTVELRLTD
NFITIIRRKDFVNMTSLVHLTLSRNTISQIVPHAFVGLRSLRALHMDGNRLSVIKSDHFK
GLINLRHLILGNNQIHEVASTSFDEFVSTIEDLDLSNNNLRGLPWEAIARMSNINTLTLD
HNLIDHIEAGTFTLLTKLVRLDMTSNRLQKLPPDSLFQHAQVLSDAKGSSSSTLAVSFGG
NPLHCNCELLWLRRLTREDDLETCASPEHLMDKYFWSIQEEEFICEPPLITKHVASKSYV
MEGQGVTLKCKAVGDPDPFIHWQSPDGKLVHNNSRTILYDNGTLDILISTLKDNGAFNCV
ASNAAGIATAAVEITMIPLPLFVNNTGHMREDPGLSDITIPSKSGNDTKGYDKQNRRVEV
TELTSSSAVIRWPSERRIPGIRMYQIQYNSTADDTLVYRMIPSTSKSFLINDLAAGREYD
LCVLAVYDDGITSLTATRVVGCVQFHTAGEVSQCRFMHSQFLGGTMIIIIGGIIVASVLV
FIIILMIRYKAYSSPVVSKAKNGSSVHLQSGGSQQQLQRSVSKQPPDEGLREAQAPMECM
ALVEDTKKEGPTDITAILEVELPSGVDKLKRRASMDAQRSGPPSEDTQTDSSLTGSTMSL
CLIGPNAGTKEAPRLKDKRNVLASVGLPPNELARTRHRFSFDGGDYSIFQSHSYPRRART
RWHKSTNQLNLESSPLANRRVTFSSTEWMLESTV
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggaccggttggtgctgtgcatgctgctgtgcgcggtcctggtgaagggacacaactgc
cccggccgctgcatctgccaacacctctccccgactctgactctgctctgtgccaagacg
ggcctgctgtttgtgccgcccacgatcgaccgcaagaccgtggagctgcgcctgacggac
aacttcatcactattatccgcaggaaggactttgtcaacatgacgagcttagtccacctc
acgttgtcccgcaacaccatcagccagatcgtcccccacgccttcgtggggctgcgctcg
ctgcgggcgctccacatggacgggaatcgcctcagtgtcatcaagagcgaccactttaaa
gggctcattaacctgcggcatctcattctggggaacaaccagatccacgaggtggcctcc
acctcctttgatgagtttgtttccacgatcgaagacctggatctttccaataacaacttg
cgcggcctgccctgggaagccatagccagaatgagtaacattaacacgctcacccttgac
cacaacctgatcgaccacattgaggcggggacctttacgctgctcactaagctggttcgc
ctggacatgacctctaacaggctgcaaaagctgcctcccgacagcttgttccagcacgct
caggtcctgtctgatgccaagggctccagctcatccactctagctgtcagcttcggagga
aatcctcttcactgcaactgcgagctgctgtggctgcgcaggctgaccagagaggacgac
ctggagacgtgcgcctcgccggagcacctcatggataaatacttttggtccattcaagag
gaggagttcatctgtgagcctccattgatcaccaaacacgtggcctccaagtcctatgtg
atggaggggcaaggcgtgactcttaaatgcaaagctgtaggcgatccagacccttttatt
cactggcagtctccagatggcaagctggtgcataacaactcccgcaccatcttgtatgat
aacggtacccttgatattctcatcagcacgctgaaggacaacggggcgtttaactgcgtg
gcgtccaatgccgcaggcatcgccacagctgccgtggagatcaccatgatcccattaccc
ttgttcgttaacaacacgggccacatgcgcgaggaccctggcctctccgacatcaccatc
ccctccaaatccggcaacgacaccaaaggctacgacaagcagaacagaagggtggaggtc
accgagctgacttcctcctctgccgtgatccgatggccgtctgagcgccgcatcccgggg
atccggatgtaccagattcagtacaacagcacagccgacgatactttagtctacagaatg
atcccttccaccagcaagagcttcttgatcaatgacctggcagcggggcgagagtacgac
ctttgcgtgctggcggtttacgacgacggcatcacttcattaacggcgacgcgtgtggtc
ggctgtgtgcagttccacacggccggcgaggtcagccagtgccgcttcatgcacagccag
ttcctgggcggcacaatgatcatcattatcggcggcataatcgtggcctccgtgctggtg
ttcatcatcatcctcatgatccgctacaaggcctacagcagcccggtggtcagcaaagcc
aagaacggctccagtgtgcacctgcagagcggcggcagccagcagcagctccagcgctcc
gtctccaagcagccgcccgacgagggactccgcgaagcccaggcgccgatggagtgcatg
gcgctggtggaggacaccaagaaggagggtccgactgacatcactgccatactggaggtg
gagctgccttcgggcgtggacaagctaaagcgacgggccagcatggatgcgcagcgctct
ggcccgccgtcagaggacacgcagacggacagcagcctgacaggctctaccatgtcgcta
tgtctcataggccccaacgctggcacgaaggaagctccccggcttaaggacaagaggaac
gtcctggccagcgtggggctgccgcccaacgagctggcacgaactaggcacagattctct
tttgacggtggagattactccatatttcagagtcacagttacccacgcagggcgaggacg
aggtggcacaagtccaccaaccagctcaacttggagtcgtcgccactcgccaacaggaga
gttacattcagcagcaccgagtggatgcttgagagcacagtctga
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