Oryzias melastigma (Indian medaka): 112149682
Help
Entry
112149682 CDS
T07439
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04510
Focal adhesion
oml04512
ECM-receptor interaction
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112149682 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112149682 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112149682 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oml04147
]
112149682 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
oml00536
]
112149682 (col4a4)
Exosome [BR:
oml04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112149682 (col4a4)
Glycosaminoglycan binding proteins [BR:
oml00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112149682 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112149682
NCBI-ProteinID:
XP_036070811
LinkDB
All DBs
Position
LG13:657332..704056
Genome browser
AA seq
1665 aa
AA seq
DB search
MQKTSCSFLLWCLLVIGCTDPADSGGKQMEPCNGRDCSACRCFPAKGEMGSPGLLGQRGP
RGPPGAVGPQGPPGPKGQKGDEGEAGPFGPKGHVGIQGLRGFPGLDGIEGHPGPAGGPGL
PGQDGCNGTRGDKGLPGLQGPQGADGEWGLPGPKGYPGDPASFSFQHPGAPGDAGLPGLP
GVQGEPGPPGLPGFPGPAGQFGNIGQPGAPGPRGPPGENGRAVPGPKGDEGDQGQEGPPG
PFEYVDPPEDRYIKGDQGPPGVKGVTGVQGEPGLDAHRGVKGEKGIVGFPGSRGVMGQPG
PEGGRGIKGQKGEQGLPGLFGQEGSKGMRGDPGLKGPPQSRDVTIVGDFGDPGAPGFPGP
PGNMGHMGFHGPPGPQGASVPGPRGAPGIKGSKGSKGDKGDPGQMITQGKTPGEPGKPGF
PGDMGLRGEPGIPGSYCLPGIPGLPGDPGDQGPPGFSGPSGFRGDTGACACGPPINIPGP
PGPKGLPGSPGLPGVQGSQGPRGETGPVGDVGLRGEEGLGGDQGLKGLKGQKGSFRVVDF
KGEKGDQGPPGVPGKPGPSGLTGLTGNPGAPGIMGPKGEAFAGVTGDRGPPGPSGLKGPP
GPVGPPGQGFMGAMGRRGAPGPPGFMGFPGPPGPRGIKGDTLSCGPQNLGSPGEKGDSGL
SGYTGNPGPPGYPGPTGLDGPKGDKGQTALPGPPGKTGPRGVVGDTGEEGPEGLSFIGER
GSPGYPGLTGLRGPTGDSEVGNRGAPGPPGPFGFPGPKGVPGPPGKDGEPGLAGLPGDPG
VKGLRGQDGAHGLIGPTGLQPVSCDAGKPGEPGLRGITGPQGQRGPPGQKGEVGPDGPEC
VGSKGDVGKPGVSGSPGRPGPMGPTGPPGNIGWPGLVGEKGLIGPQGERGLPGDVGRYGG
PGAPGKPGEMGLCGRDGPPGNEGLKGEKGSIGDMGPPGHTNFILIKGTKGKLGAPGENGF
PGPRGDKGVKGDLGHPGHPGCCGPPGVKGFQGPKGPQGKPGHPGPAGPNGSQGQPGPPGW
PGDPGDTGCPGKPGECGNLGCPGPQGEKGESIGCPGVPGHKGDPGFFGLQGSPGPPGDPG
GTGNAGPPGPKGCKGERGCRGNPGEPGVQGPIGPRGHPGYPGLAGAPGADGPPGSTGDQG
LQGPPGPLGLHGLDGLKGVKGDMGTKGLTVFGPRGPQGPPGDKGPPGPPGPYGTSPPGPK
GPKGPQGSKGPQGRIGPPGDPGPDCTNPLPGSPGDPGYQGPDGETGLPGEIGVPGPNPPV
RGDDGDNGPPGSQGFPGEQGKPGLPGLKGYRGQMGIKGEKGDRGWIGLPGDKGLNGHPGS
MGRPGSKGLPGPAGVKGEKGQVLPAPPCFPAPAGPPGPPGPPGPAGDCGLSGENGQVGPT
GEKGNPGNQGPVGGVGPMGPKGERGDPGLQGEEGAVGEKGARGAAGDRGPTAPCQEKNMG
FLLVVHSQSVNIPRCPPQTEKLWDGYSLLYLEGQEKAYTQDLGAAGSCVRVFSTMPFSSC
DMNRCLYASRNDKSYWLSTMANVTREPVMGDAIRGLISRCVVCEAPSTPVAMHSQNSIEP
NCPSNWATLWTGYSFIMHTGAGDEGGGQSLTSSGSCLTEFKSLPFLECQGPRGTCHFFAN
IYSFWLTHQGGGASSTHRNSSTLIDPMQHKNYISRCRVCMKLSNQ
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagacttcctgctccttcctgttgtggtgtctcctggtcattggatgcactgat
ccagctgattctggggggaaacagatggagccgtgtaacggacgggactgctccgcctgt
cggtgtttcccggccaaaggggagatgggatctccaggtcttctgggtcagcggggccct
cgggggccgccgggtgccgtgggccctcagggacctccaggaccaaaaggacaaaaagga
gacgagggagaagcaggaccgtttggacccaaaggccacgtaggaatccagggtctaaga
ggctttccaggtttagatggaatagagggtcatccaggacctgctggaggtccaggtctt
cccggtcaagatggatgtaatggaactagaggagacaaaggactgcctgggcttcaagga
ccacaaggggccgatggagaatggggtttaccaggaccgaaggggtatccaggagatcca
gcatctttctccttccagcacccaggagccccaggagatgccggacttcctggactgcct
ggagtccagggcgagccgggtcctccgggtcttccaggttttcctggtcctgcaggacag
ttcgggaacatcggtcagcctggtgcgccgggtcctagaggtcctccgggagaaaacggt
cgagctgtgcctggaccgaaaggagacgagggagatcagggccaggaggggcccccgggg
cccttcgagtatgtggaccccccagaggaccggtacatcaaaggagatcagggtcctcct
ggggtcaaaggagtcactggagtgcagggagaaccggggctggacgcccatcggggggtc
aaaggagaaaaaggcattgtgggatttccagggtccagaggtgtaatgggtcagcctggt
ccagagggggggagaggtatcaagggacaaaaaggggagcaaggtctgccaggcctgttt
ggacaggaggggtcaaagggcatgaggggagatccgggcctgaagggccccccccagagc
agggacgtcacaatcgtcggggacttcggggaccctggtgctcctgggtttccaggtcct
ccaggaaacatggggcatatggggttccacggtccaccgggacctcaaggtgcatcagtg
ccgggaccaagaggtgctcctgggatcaaggggtctaaggggtctaaaggggacaaagga
gatccaggtcaaatgatcacacagggaaaaacaccaggagaacctgggaaaccaggattt
cctggagacatggggctgaggggagaaccaggaattccaggaagttactgtcttcctggg
ataccaggcctgccgggagacccaggtgatcagggcccccccgggttctcaggcccctct
ggatttagaggtgataccggcgcctgcgcttgtggacctccaatcaacatacccggtcct
ccagggcctaaaggtctccctgggagtccagggttgccaggagtccaaggatcccaaggc
ccgagaggagagacgggtcctgtgggagatgtaggactgagaggggaagagggtctgggt
ggagatcagggccttaaagggctgaaaggtcagaaagggagttttcgagtggttgatttt
aaaggtgagaagggagatcagggccctccaggtgtgccaggcaaaccaggaccctctgga
ctaactgggctcactgggaatccaggggcccctggaatcatgggccctaagggggaggct
tttgctggtgttactggagacagaggtccaccaggaccatcaggactgaagggccccccc
ggacctgtggggcccccaggacagggtttcatgggagcgatgggaaggcgaggggcccct
gggcctccaggatttatgggatttcctggacctccaggaccaagaggcattaaaggtgac
actttgtcctgtggtcctcaaaatcttggttctcctggagagaaaggagactctggactc
tcaggttacacagggaacccaggtcctccaggttatccaggaccaacagggctggatggt
ccaaaaggagataaaggacagactgcactaccaggaccacctgggaaaacaggacctcga
ggtgtggttggagatactggagaagaaggacctgaaggccttagtttcattggagaaaga
ggctctccaggatatccgggcctgactggacttcggggaccaactggggacagtgaagtt
gggaataggggggctcctggcccccctggacccttcgggtttccaggaccaaaaggcgtg
ccgggacccccaggcaaagatggagaaccaggtttagcaggtctgcctggagaccctgga
gtgaaggggcttagaggacaggatggagctcatggtttgattggacccacggggctccag
cctgtatcatgtgatgcaggaaaacccggtgaacctggcctgcggggcatcactggaccc
caaggtcaacggggtccaccaggccagaaaggggaggtggggcctgacggtcctgaatgt
gtaggctctaaaggggatgttggtaaaccaggcgtttcaggttctcctggcagaccggga
cctatggggcccactggtccacctggaaacataggctggcctgggcttgttggagaaaag
ggactgattgggccccagggagagagaggactgcctggagatgtgggaaggtatgggggt
cctggagccccaggcaagcccggagagatgggtctttgtggacgagatggacctccggga
aatgaaggcttgaagggagagaaaggctctataggagacatgggccctccaggacatacc
aacttcatcctaattaaaggcactaaaggaaagctgggggctcctggagagaatggattc
cctgggccccgaggggataagggcgtgaagggggatctgggtcatcctgggcatccaggg
tgctgtggacccccgggtgttaaaggatttcaaggacccaaaggaccccaaggaaaacca
gggcatccaggaccagctggacctaatggatcgcaaggacaacctggccctccaggatgg
ccgggagacccaggtgacacgggatgtccggggaaaccaggagaatgtggtaatctggga
tgtccaggacctcaaggtgaaaaaggagaatcgattggctgtcctggggtccctggacac
aagggcgatcctggattctttggccttcaaggatctccagggcctcctggagatcctgga
ggtactggcaatgcgggccctccaggaccgaaaggatgcaaaggagaacgtggttgccgt
ggaaaccctggagaaccaggtgtgcaaggtcccatcggccccagaggtcatccaggttat
cctggtcttgcaggtgcacctggagctgacggaccaccaggatcaactggtgatcaagga
ctgcaaggtcctccgggaccactgggcctccatggactggatggactgaaaggagtcaaa
ggggacatggggactaaaggcctgactgtatttggtccaagaggacctcaaggtcctcct
ggggataaaggtcctccaggtcctcctgggccttatggtacatcaccaccagggcccaaa
ggaccaaaaggcccccaaggatcaaaaggacctcaaggaagaataggaccacctggagat
ccaggaccagactgtacaaacccacttccagggtctcctggagatcctggataccaggga
ccggatggagagacagggttgcctggagaaatcggtgtccctggtccaaaccctccagtc
cgaggggatgatggagacaacggtcctccaggcagccaaggctttccaggagaacaggga
aaacctgggctcccgggactaaagggctacagaggacagatgggaattaaaggagaaaaa
ggggatagaggttggattggactacccggggataagggtctaaatggtcatcctggttct
atgggacgcccaggatcaaagggacttccaggaccagcaggagtaaaaggagagaaggga
caagttcttcccgctccaccttgttttccagcaccagcgggcccgcctggtccacctggc
cccccaggtccagctggagattgtggactgagtggagaaaatggccaagtagggccaaca
ggtgaaaagggaaacccggggaatcaggggccagtaggaggagtgggcccaatgggtcca
aagggagagcgaggagacccaggactgcaaggagaggagggagcagtaggagaaaagggg
gccagaggggcagctggtgacaggggtccgacagcaccatgccaggaaaaaaacatgggc
ttcctgctggtggtccacagccaatcagtgaacatcccccgctgcccgccacaaacagag
aagctgtgggatggatacagtctgctgtacctggaggggcaggagaaggcctacactcag
gacctgggtgctgccggttcctgcgtccgcgtcttctccaccatgcccttctcctcctgc
gacatgaacaggtgcctctacgccagcaggaacgacaagtcctactggctgtcgaccatg
gcgaacgtgacccgggagcccgtgatgggcgacgccatccgaggcctcatcagccgctgc
gtggtctgcgaggcgccttccacccctgtggccatgcacagccagaactccatcgagcca
aactgccccagcaactgggccactctgtggaccggatactccttcatcatgcacacagga
gcgggcgatgaaggcggcgggcagtccctcacgtcttcaggaagctgtttgacagaattc
aagtctctgcccttcctggagtgtcaggggcctcgagggacctgccactttttcgccaac
atctacagtttctggctgacgcaccaggggggaggagcctcctccacccacaggaactcc
agcacgctgatcgaccccatgcagcacaagaactacatctccaggtgccgggtctgcatg
aagctgtccaaccagtga
DBGET
integrated database retrieval system
