Oryzias melastigma (Indian medaka): 112149718
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Entry
112149718 CDS
T07439
Name
(RefSeq) spectrin beta chain, non-erythrocytic 4 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04517
IgSF CAM signaling
oml04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112149718
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112149718
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112149718
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112149718
Intermediate filaments
Intermediate filament-binding proteins
112149718
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_4
Helical_needle
PH_20
Motif
Other DBs
NCBI-GeneID:
112149718
NCBI-ProteinID:
XP_024133372
LinkDB
All DBs
Position
LG13:complement(4283799..4373716)
Genome browser
AA seq
2696 aa
AA seq
DB search
MANASPDLDNAEAQRQLNNNNRPNSSGFWEAECTSSKLFECSRIKALADERDAVQKKTFT
KWVNSHLARVNCRISDLYNDLKDGYMLTRLLEVLSGELLPRPTRGRMRIHCLENVDKALQ
FLKEQRVHLENVGSHDIVDGNHRLTLGLIWTIILRFQIQVIKIATEDNRETRSAKDALLL
WCQMKTAGYSEVNIQNFTTCWRDGLAFNALIHRHRPDLIEFHKLTRSNATHNLQQAFNVA
EQHLGLTKLLDPEDVNTENPDEKSIITYVVSYYHYFSKMKALIVEGKRVGKVLDNCIEAE
KIISRYEGLASDLLDWIEKTIAIISNQKFANSLTGVQQQLQAFTTYCTIEKPIKFQEKGN
LEVLLFTIQSKLRANNQKPYVPHEGKLISDINKAWERLEKAEHERGVALRKELIRQEKLE
LLAQRFDHKTTMRQAWLNENQRLVSQDNFGYDLPAVEAAMKKHEAIEADIASYEERIGVV
VELAAEMEVEGYYDIRRILARKENILGQWSLLKELVAGRRARLEQNLALQKTFQDMVYMI
DWMEDTQAQLLSKDFGKHLLEVDDLLQKHSLQEADISVQAERVETLNAAALKFTILEGYQ
PCDPQIICNRVNHVSSCLEDLKRLAADRRSELEESRQLWAFFQELEESEAWIREKSSILA
SQGFGRDLSSVLKLLQKHKTLAGELLAHRSLLQNTMKRGKQILSEKSFGTTGIQERIMEV
KDEWKKLEDQAAQHLGHLQEALNFFQFSTEMDDLVAWLQDAYRLVSSEDFGHDEYSTQSL
LKKHRGVTEAIDKHRLHVVALRKHMGVLPLQYREQEEVQVRMAEVEQLYTEVADVAVLRQ
QWLHDALAVYHMFSEVNACELWIDEREQWLDKMEIPEKLEDVEVVAHRFESLDQEMNSLM
GRILDVNQIVQQLLDGGHPSSSEVRGCQDHLNSRWNSIVELVEQKKDQLDSMLRLQNYLL
ECAEIKSQIQEKRKAIDATQYMGSDLGGVLALQRRLSTMEGALAVLEPKLLHLQEEAEHL
ATAHSGRAMEILVPFDGISVEWEELKRTLQGCEDSLMVASRLQSFIQDLDSFLTWLVQTQ
TAAASDQLPNDLEEAEKLINKHAALKEEIGRYEEDYERLQAMNELLESEDAPLPQAALQQ
WLQKLDVGWNKLLEMWESRREVLVQAHIFHLFLRDVKQAESFLNNQESALAHVELPTTVE
TVEAAIKKHKDFTTTMELNLHRIKAVIEAGESLISQNNIYSDRIRERIDTLAKRGNQNRH
LAQKWLEKLNDQWELQRFLQDCHELGDWVNEKMLMARDSSRDETQKLHKKWLKHQAFMAE
LAQNKEWLDKIEKEGQKLIQEKPELSPVVRRKLEEIRECWQDLESTTQAKARQLFEANRA
DLLVQSYESLHQRLGQLEGQLAYVDQGQDLTTVNKQLKKLQTLEGQMEEWYKEVGQLQVQ
AASIPQQTPVKETVAERQTAVETRMLRLIEPLKERRRILLASKEVHQVGRDLEDEILWVQ
ERLPLATSHEHGSTLQAVQQLMKKNQSLQRELQSHRSRMEEVLERAGIIASIRSPEADCI
RAGHDQLAQLWALLWTETERRQLLLDTMYQVQQYYLDTAEVEAWLSEQELHMMNEEKGKD
EPSTLQLLKKHLVLEQTIEDYAETIGLLSQQCRQLLEMGHPDSEQISKRQSQIDRLYVSL
KDLVEERKSRLEQQYWLYQLNREVDELEQWIAQREVVASSPELGQDFEHVTVLQEKFTEF
ASETGSVGQERVTAINQMVDELIDYGHSEAATIAEWKDGVNESWADLLELMETRAQMLAA
SHQLHKFFSDCREVLAQIQDKHQRLPEVRARQGSTSNTNTLQRLLHSFEQDIQLLVTQVR
QLQESAAQLRTVYAGEKAEAIACCEHEVMQSWKELLTSCEECRLQITTETDKLRFFSMVR
DQIMWMDSIICQIGTGEKPRDVSSVEVLMNYHQSLKSEVEARSQSVLECIEMGKMLLAAR
NPAAEEIKEKLDKVIAKQRELTEKWDRHWEFLKQLLEVHQFAQEAVVAEAWLTAHEPFIN
SKELGESVDEVEQLIRRHEAFRKAAATWEERFSSLRRLTTVEKLKAEQGKLPATPLLGRK
VFLDPQDALATPSTLPRLPVSPVIRQTIYEQNEASSPPSPSPATPTPSPSSAARRLGSTV
ANYTPVMNGSGYRHTLEVRHGGVVGVAAGLGQPAASSIASVATAAMLVSANQARESAVSM
RDQAAKVMSHLQPVQAGRDLEARSSPYLRQPKIKHLDDAVTPLLVASRLERVRERGRERD
SVTGEAGADRAEVAVMAEVVLQERGRERLHSEPTRGSRGSRPDPMGHAEPQAQTHSHHHR
MERQLSSEQLIQARRDELPQEVWREHAERRDRRTLERQTSSEQEGHGGHEGRRRERDRHR
LDRQDSSEHDTGREQSDRRSGGGEKRSTMAEIVEQLQEREAAQARGEVPRLPNGLPEKSS
RPDRPRARDRPKPRRRPRPKEPGEPRRSRSAPAQSSPAVPQPPTHTAHHEGFLFRKLDIE
SLKKSTNSRSWVNLYCVLNKGELGFYKDAKNTATPYNNEPMLSLSHCQCDVTNGYKKKKN
VFTLKTKDGSEFLFHAKDEDDLKAWVTNITTSISEHEEIAKWGQPQPTTSSTDEGTRRDG
SKADNRSERGAERIERVEKEKEKEKEKEKERGERSEKSEKGGKSDAKRSEKSGKKK
NT seq
8091 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgcctccccagacctggacaacgcagaagcccagcgccagctcaacaacaac
aacagaccaaacagctcggggttctgggaggcagagtgtaccagctccaagctgtttgaa
tgctcccgcatcaaggcgctcgcagatgaaagagatgcagtccagaagaagacttttacg
aagtgggtcaactctcatttggccagggtgaactgtcgcatatctgacctctacaacgac
ctgaaggatggatacatgctcacgcgactgctggaggtcctcagtggagagctgctgcca
agaccaacgcgaggccgcatgcggatccactgcctggagaacgtggacaaagccctgcag
ttccttaaagagcagagggtccacctggaaaacgtcggctcccacgacatcgtggatggg
aaccaccgcctcaccctggggctcatctggactattatcctgcgcttccagatccaggtg
atcaaaattgcgacagaggacaacagagagacccgctccgccaaggatgcgctgctgctt
tggtgccagatgaagactgcagggtactctgaggtcaacatccagaacttcaccacctgc
tggagagacggcctggcttttaacgccctcattcacagacacagacccgacctcatagag
ttccacaagctgacacgctccaatgcaacccacaacctgcagcaagccttcaacgtggcc
gagcagcatctgggcctcaccaaactgctggacccggaggatgtgaacacagagaatcca
gatgagaagtccatcattacgtatgtggtctcctactaccactacttctccaagatgaag
gctcttattgtggaggggaagagagttggcaaggttcttgataactgcatagaggcagaa
aagatcatcagccgctacgaaggtttggcctcagacctgctggactggatagagaagacc
atcgcgatcatcagcaaccagaagtttgccaactcgctgacgggagtgcagcagcagctg
caggctttcaccacctactgcactatagagaagcccatcaagtttcaggaaaaggggaat
ctggaggtccttctcttcaccatccaaagcaaactcagagccaacaaccagaaaccgtac
gtgcctcatgaagggaagctgatctctgacatcaacaaggcatgggagagactggagaag
gcggagcatgagaggggcgtggcactgcgcaaagagctgattcgccaagagaagcttgaa
cttctggctcaacgttttgatcacaaaaccaccatgaggcaagcgtggctcaacgagaac
cagaggctggtgtcacaggacaatttcggctacgatctgccagcagtggaagcagctatg
aagaagcacgaggccatcgaggcggacatcgcctcttacgaagagcggatcggcgtggtc
gtggagctcgccgcagagatggaagtggaggggtactacgacattcgccgtatcttggca
cgcaaagagaacatcctgggccagtggagtctgctgaaggagctggtggccggcaggagg
gcccggctggagcagaacctggccctgcagaagacctttcaggacatggtgtacatgatc
gactggatggaggacacacaggctcagctgctgtccaaggactttgggaagcatcttctg
gaggtggacgaccttctgcagaaacacagcctgcaggaagcggacatctccgtccaggct
gagagagtggagacgctcaacgccgcggcgctcaagttcaccatcctggagggttaccag
ccgtgcgacccgcagatcatctgtaaccgcgtcaatcacgtctcttcctgcctggaggac
ctgaagcgtctggctgctgacagacgctctgagctggaggagtccagacaactctgggcc
ttttttcaggagcttgaggaatcggaggcatggatccgggagaagagctccatcctggcg
tctcagggcttcggcagagacctgagcagcgttctgaagctgctgcagaaacacaagact
ctggccggagagctgctggctcaccgctcgctgctgcagaacaccatgaagcgagggaag
cagatcctgagcgagaagagcttcggcacgaccggcatccaggagcgaatcatggaggtc
aaagacgagtggaagaagctggaggaccaggccgcgcagcatctcggccacctgcaggag
gcgctcaacttcttccagttttccacagaaatggacgacctggtggcctggctgcaggac
gcttaccgcctggtctccagcgaggacttcggtcacgacgagtactccacgcagtcgctg
ctgaagaagcacagaggggtcaccgaggccatcgacaaacatcgcctccatgtggtggcg
ctgcgcaagcacatgggggttctgccgctgcagtaccgcgagcaggaggaggtgcaggtg
cgcatggcggaggtggagcagctgtacacggaggtggctgacgtggccgtgctccgacag
cagtggcttcacgacgcgctcgccgtctaccacatgttcagcgaggtcaacgcctgcgag
ctgtggatcgacgagagggagcagtggctggacaagatggagatcccggagaaactggag
gatgtggaggtggtagcgcacaggtttgagagcctggaccaggagatgaacagcctgatg
ggacggatcctggacgtgaaccagatcgtccagcagctcctggatggaggtcacccctcc
tcctcagaggtcagggggtgtcaggaccacctcaactccaggtggaacagcatcgtggag
ctggtggagcagaagaaggaccagctggactccatgctgcgtctgcagaattacctgctg
gagtgcgccgagatcaagtcccagatccaggagaagaggaaagccatcgacgccacgcag
tacatgggcagcgatttaggaggagtcctggctctgcagaggcgtctgtccaccatggaa
ggagctttagccgtcctggagcccaaactcctgcatctacaggaggaggcggagcatctg
gccacagctcattcaggccgagcaatggagatcctcgtgccctttgatggcatcagtgtg
gagtgggaggagctaaagcggactctgcaggggtgtgaggactcactgatggtggccagc
cggctgcagagcttcatacaggacctggactccttcctcacctggctggtccagactcag
acagctgctgcctcagaccagctacctaacgacctggaggaagctgagaaactcatcaac
aaacatgctgctctcaaggaggagattggacgatatgaggaagactacgagcggcttcaa
gccatgaacgagctgctggagtctgaggatgctcctctgcctcaggccgcgctgcagcag
tggctccagaagctggacgtgggctggaacaagctcctggagatgtgggaaagcaggaga
gaagttctggttcaggcccacatttttcatctattcttgcgagacgtcaaacaggcagag
tccttcctcaacaaccaggagtcggccctcgctcatgtggagctccccaccaccgtggaa
acggtggaagccgccatcaaaaaacacaaggacttcaccaccaccatggagctgaacctc
cacaggatcaaagccgtgatcgaggcgggagaaagcctgatcagccagaacaacatctac
tcggatcgcattagggagcgcatcgacactctggccaagagggggaaccagaaccgacac
ctggcccagaagtggttggaaaagctgaacgaccagtgggagctgcagcggtttctccag
gactgtcatgagctgggcgactgggtgaacgagaagatgctgatggcgagggacagcagc
cgagacgagacccaaaagcttcataagaagtggctgaagcaccaagccttcatggcagag
ctggcccagaacaaggaatggctggacaaaatagaaaaggagggtcagaagctgatccag
gagaagccggagctcagccccgtggtccggaggaagctggaggagatccgggagtgctgg
caggacctggagagcaccactcaggccaaagctcgccagctctttgaagccaacagggca
gacctgctggtacagagctacgagagcctccaccagagactgggacagctagaaggtcag
ctggcctacgtggaccagggtcaggacctcaccacagtcaacaagcagctcaagaaactg
cagactctggaaggtcaaatggaggagtggtataaggaggtgggccagctgcaggtgcag
gcggcctccatcccgcagcagacgccggtcaaagagacggttgccgagcgacagacggcc
gtcgagaccaggatgttgcgtttgatcgaacctctgaaggagagacgacgaattcttctg
gcatcaaaggaggttcatcaagtcggacgagacttggaggacgagattctgtgggtgcag
gagcgcctcccattggccacgtctcatgagcacggctccaccctgcaggccgtccagcag
ctcatgaagaagaaccagtcgctccagagggagctgcagagccaccggagcaggatggag
gaggtcctggagcgggcggggatcatcgcctccatccgcagccccgaggccgactgcatc
cgggccggccacgaccagctggcccagctgtgggcgctgctctggaccgagacggagcgg
aggcagctgctgcttgacaccatgtaccaagtgcagcagtattacctggacacggcggag
gtggaggcctggctgagcgagcaggagctgcacatgatgaacgaggagaagggaaaggac
gaacccagcaccctgcagctgctgaagaaacatctggtcctggagcagaccatcgaggac
tacgcagagaccatcggcctgctgtcgcagcagtgccgccagctgctggagatgggacac
cccgacagcgaacagatcagcaagcgtcagtcgcagatcgaccgtctgtacgtgtctctg
aaggacctggtggaggagaggaagagccgtctggagcagcagtactggctctaccagctc
aacagggaggtggacgagctggagcagtggatcgctcagagagaagtggtcgccagctcg
cctgaactgggtcaagactttgagcatgtgaccgtcctgcaggagaagttcacagagttt
gcatcagaaacaggaagtgtggggcaggaacgagtcacagccatcaaccagatggtggac
gagctcatagactacggacactcggaggcggcaaccatcgccgagtggaaagacggagtg
aacgagtcgtgggccgacctgctggagctcatggagactcgtgcgcagatgctggcggcc
tcgcaccagctgcacaagttcttctccgactgcagagaggttctggctcagattcaggac
aaacaccagaggctgccggaggttcgagctcggcagggcagcacctcaaacaccaacacc
ctgcagagactcctgcacagctttgagcaggacattcagctgctggtcacacaggtgcgt
cagctgcaggagagcgcggcccagctgaggacggtgtacgcgggcgagaaggccgaagcc
atcgcctgctgcgagcacgaggtgatgcagagctggaaggagctgctgacgtcctgcgag
gagtgccgcctgcagatcaccaccgagaccgacaagctgcgcttcttcagcatggtccgg
gaccagatcatgtggatggactccatcatctgccagataggaacaggagaaaaaccgcgc
gacgtgtcctcagtagaagtcctcatgaactatcaccagagcctgaagagtgaagtggag
gctcgcagccagagcgtcctggagtgtatcgagatgggaaagatgctgctggctgctcgg
aaccccgccgccgaggagatcaaggagaagctggacaaggtgatcgcgaagcagcgtgag
ctcaccgagaagtgggacaggcactgggagttcctgaagcaactgttggaggttcaccag
ttcgctcaggaggcggtggtggcggaggcgtggctgacggcgcacgagccgttcatcaac
agcaaagagctgggcgagagcgtggacgaggtggagcagctcatccggcgccacgaagcc
ttccgcaaagctgctgccacctgggaggagcgcttcagctccctgcggcgcctcaccacg
gtggagaagctgaaggcggagcagggaaagctgcctgccacccctctgctgggccgaaaa
gtcttcctggacccccaagatgctttagccactccctccaccctccctcgcctccccgtc
tcccccgtcatcagacagaccatctatgagcagaacgaagccagctctccgccctcgcct
tcacccgccactcccaccccctccccttcatctgcggctcgccggttggggtcgaccgtc
gccaactacacccctgtgatgaacggctccggctaccgccacaccctggaggtccggcat
ggtggcgtggtgggcgtggctgcaggactgggtcagccagctgcctcgtccatcgcgtct
gttgccacggcagccatgttagtgtcggccaatcaggcgcgagaatctgccgtcagcatg
agagaccaggccgccaaggtgatgagtcacctccagccagttcaggcagggcgggacctg
gaggccaggtcgtccccgtatctacggcaaccgaagatcaaacatctggacgacgccgtg
acgccgctgctggtcgccagccggctggagagagtgagggagagggggagggagcgggac
agcgtgacgggggaggcgggagcagacagggcggaggtggcggtgatggccgaggtggtg
ctacaggagcgcggccgagaacgcctgcacagcgagcccaccagggggtcccggggatcc
aggcccgaccccatgggccacgccgagccgcaggcccaaacgcactcgcaccaccacagg
atggagcggcagctgtccagcgagcagctgatccaagcccggcgggacgagctcccccag
gaggtttggagggaacacgcggagcgccgcgacagacgcacgctggagaggcaaacgtcc
agcgagcaggagggccacgggggccacgagggccggcggagggaaagagaccggcaccga
ctggacagacaggactccagtgagcacgacaccgggagggaacagtctgaccggcgctcc
ggaggaggagaaaagagaagcaccatggcagagatcgtggagcagctgcaagaaagagaa
gcagctcaggctcgtggtgaggtcccccgtctgcccaatggtctcccagagaagtcttcc
cgtccagaccggccccgagcgcgggaccgaccgaagcccagacgaaggccacgacccaaa
gagccaggagaaccgcggcggtccaggtccgctccggcccagagcagcccggcggtcccg
cagcctccaacgcacacggcacaccacgaggggttcctgttccgcaagctggacatcgag
agcctgaaaaagagtacaaacagcagatcgtgggtcaacctgtactgtgtgctgaacaag
ggggagctgggattctacaaggacgccaagaacacggcgacgccctacaacaacgagccg
atgctcagcctctcccactgccaatgcgacgtcaccaacggctacaagaagaagaagaac
gtcttcaccctgaagacgaaggatggcagtgagtttctgtttcatgcaaaagatgaggac
gacctgaaggcgtgggtgaccaacatcaccaccagtatttcagagcacgaggagattgcc
aaatggggccagccccaaccaactacctcatccaccgacgaggggacgcggcgagacggc
agcaaggcggataacagatcggagcggggggccgagcgcatcgagcgggtggagaaggag
aaggagaaggagaaagagaaggagaaagaaagaggagaacggtcagagaagtccgagaaa
ggcgggaagtcggacgcaaagcgctcagaaaagtccggtaagaagaagtga
DBGET
integrated database retrieval system
