Oryzias melastigma (Indian medaka): 112149882
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Entry
112149882 CDS
T07439
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03030
DNA replication
oml03420
Nucleotide excision repair
oml03430
Mismatch repair
oml03440
Homologous recombination
oml03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112149882 (rpa1)
03420 Nucleotide excision repair
112149882 (rpa1)
03430 Mismatch repair
112149882 (rpa1)
03440 Homologous recombination
112149882 (rpa1)
03460 Fanconi anemia pathway
112149882 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112149882 (rpa1)
03032 DNA replication proteins [BR:
oml03032
]
112149882 (rpa1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112149882 (rpa1)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
112149882 (rpa1)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
112149882 (rpa1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
112149882 (rpa1)
MMR (mismatch excision repair)
112149882 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
112149882 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
112149882
NCBI-ProteinID:
XP_024133632
Ensembl:
ENSOMEG00000004704
UniProt:
A0A3B3BEY1
LinkDB
All DBs
Position
LG13:11597293..11619414
Genome browser
AA seq
598 aa
AA seq
DB search
MTKLSEGAIEALANGTGGNEAVLQLVNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NCMAEENILAQNCICVLKRHVTNVLKDGRRVVIILEIEVVKPAGEVGGKLGDPVPYNEAQ
KGVSQPAPAQENRPPLQPQNKMEAVKGFNRDFGKKPPLSMPTTPGGSSKAVPIASLNPYQ
SKWTIRARVTNKSGIRTWSNSRGDGKLFSMELVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYLSKASLKIANKQYTSVKNDYEMTLNGESTILPCEESCDVPIMQCDFISIGDLESRDKD
AIVDVIGVCKSVDEVTRLTTKSSREVSKRSLSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKGAKLSDFGGRSLSASFSSTIMVNPDIPEAYKLRGWFDKEGHAMEGQSLTELRGSGG
GSTNWKTLSDVKNEQLGHGNKADYFTCIATVVYLRKEYCLYKGCPSQDCNKKVIDQHNGT
YRCEKCDKEFPNFQHRLILSANIADHTDNQWVTCFQDSAEAILGQNAAYLGQLQDSNEAA
FDDIFQQANFKTYIFRNRVKEEMYNDETKIKATVMDLKPIDHKDYIKKLIVNIRKLAV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctttcagaaggcgccatagaggctttagctaatggaaccggtggaaacgag
gccgtccttcaactggtgaacattcgaaagattgatggaggaagtggaccgtctcgcttt
cgggtgatgatgagtgatggacgacacactttgtcttccttcatgctttcaactcagctg
aactgcatggcagaggaaaacattctggcccaaaactgcatctgtgttctgaagagacat
gtgaccaatgtgctgaaggatggccgacgggtggtgatcattttggagattgaagtcgtc
aagcctgctggagaagtcggtggtaaattaggagacccagttccttacaatgaagctcag
aaaggagtctcccaaccggctccggctcaggaaaaccggcctccactgcagcctcaaaat
aaaatggaagctgtcaaaggtttcaaccgagactttgggaagaagcctccgctctccatg
cccaccactccgggaggaagctccaaagcggttcccatcgccagcctcaacccctatcag
tccaaatggactatccgtgctcgtgttactaacaagagcggcattcgcacgtggagcaat
tctcgcggtgatgggaagcttttctccatggagcttgtagatgaaagcggagagattcga
gtgactgggtttaaccaggaagtggacaagttcttctccctgattgaggtcggcaaggtc
tactacctctccaaggcctccttaaagatcgccaacaagcagtacacgtccgtaaagaac
gactatgaaatgacgctcaacggagagtccaccatcctcccctgtgaggagagctgtgac
gttcccataatgcagtgcgactttatttccatcggagacttggagagcagagacaaggac
gccatcgtggacgtgattggagtttgcaagagtgtggacgaggtgacccgcctcaccacc
aagagcagccgtgaggtgtctaagagaagcctaagtctgatggacatgtctgggaagctg
gtgacggtcacactgtggggagaggaagcggagaagttcgatggttctggacagcccatc
gtcgccatcaagggtgccaagctgtcagacttcggaggccgctcgctgtctgcttccttc
agcagcaccataatggtcaacccagatattcctgaggcctacaagctcagaggctggttt
gacaaggagggccacgctatggagggacagtctctgacggagctgaggggcagcggtgga
ggaagcaccaactggaagactctctctgatgttaagaacgaacagctgggacatggaaac
aaggcagactacttcacgtgcatagctaccgtggtgtatctgcgtaaggagtattgcctt
tataagggctgcccaagccaagactgcaacaaaaaagtgattgaccagcacaacggcacg
taccgctgcgagaaatgcgataaagagttccccaatttccagcatcggctcatcctctct
gccaacattgctgatcatacagacaaccagtgggtgacttgtttccaggacagtgctgag
gccatcttgggtcagaatgcggcgtacttgggacagctgcaagactcgaatgaggctgca
ttcgacgatatcttccaacaagccaacttcaaaacttacatcttccgcaacagagtgaag
gaagaaatgtacaatgatgaaaccaaaattaaagccactgtgatggatttgaagcccatc
gaccataaagactacatcaagaagctgatcgtgaacattagaaaactggctgtgtag
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