Oryzias melastigma (Indian medaka): 112149971
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Entry
112149971 CDS
T07439
Symbol
rsf1a
Name
(RefSeq) remodeling and spacing factor 1 isoform X1
KO
K11657
remodeling and spacing factor 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112149971 (rsf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112149971 (rsf1a)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
112149971 (rsf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WHIM1
PHD
DDT
CHD1-like_C
Motif
Other DBs
NCBI-GeneID:
112149971
NCBI-ProteinID:
XP_024133753
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Position
LG13:complement(5105944..5123050)
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AA seq
1399 aa
AA seq
DB search
MAAPAVVRSSGPPLCPSFAEVCSFLERYGPALDLPEMTFPQLERYLRDTTAVSKPLVDLH
VKLLRKLGKSVTTDRWEKYLAKVCQELNSTWAWELEQKGYQDMSMECKSSILKYLCECQF
DDNLKFKMMINDEDPEKMRLQPIGRDRQGLLYWMQLDQEQNIRLYTEEQDDLDGSTWRCI
VRNRNDLAEALELLKTQVEPNQNQEQNLTESRSTSPAERGDEANEINNAKSTRTTEKTDH
IKTDPEIEKKPMKQEMKQEPMIKQENTENEVKEEKTDNKTSVFDNRVSTITAIKPEPRDV
AKNAVSVVTASCVSSTKPNVNEEAERAAVRSNQQAKIPLKKRNLKLADSFHTNHLNSNSS
SIIVCNPSVIQSKDAHGREGNFLNSAAPACGPAAPQHQLLNSAGPELTNGRASLFQPYKE
GQNGVIGVIGHVGVIRSPSELHRTSGSERQEQNGPSLEPGRAVREDKEVSRQSVLVRKEP
ASSSFPLHEASESQTCKAPPPLKADKLPEETEKKVDSAGASSVCQATGETQKQEEEERSQ
EATEQTTEEESEKAKNAGRISRQQKDLEETRKDGLERDLKTEEPEKASSNLSSICTESRR
CASPKKTEKHSKKEEEKGLNGGIPGQAKGKRSAGSGSEQERGGPLEEASSELQKEGIRLK
IKIPPHRRNKLRGKRGKGQEKDVQKEQEEGRLLRRSARICRSSSLPTCRPSSKVTEIQRK
KPPRKQPLPARARDEEEAEEEEEEEQISASKENRKLVGEVRKLRGKRRHRRPRWSNVRTK
RRKPNEEEEGRGQKEDGEERSDSEEESCKSTEIPSEDCCSHCGLPNHPELILLCDSCDSG
YHTACLRPPVMLIPDGEWFCPPCQHKLLCEKLEEQLQNLDSALKKRERAERRRERLVYVG
ISVENIIPEEDKEEEEKTTKKKDCKRSKNLGRRSTRTRKHISYRFDDFDDAIDEAIEEDF
GDLCGGAGKDITSILSEDVERPIRSQTRAARSRRRRRLNDLESDSTAAESEDEFMLSNSS
EEEECGASGPDDDEEEDEEDMGSDGGSWDKGTKPRKALKGVPRQKPGRGRRRGRKRQWRR
SEEESEEDIDSDQYSDMSDSDQKRRGLRRGQHQQVNYRETSESSDSSRASAEEKKSKART
RKEALSSDYSDSFPSSRESEEEDYEEEDEDRRPIGRRREKEEFRKSRTIEKRRRYKHHEE
RGQRLRRRHLEKEPVKDRRRRLTKDEEEEDLEKMGRGKRREILSQQRRRRLAQMLKKRRP
STDEEEESSEEESESSSEEDRPIRKRLNRIDSDDEEDEEEEEDVRRKTKKPSGGERTSDD
KNDSDSQERGRGQSPSANEHQTSRGLQKPGSGSSSTPRDGSASDRQSRHNGPWHPEEEEE
EEEEGQTDSINSVQNSPPS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atggctgctccggcggtggtgaggagctccggcccgccgctctgcccgagcttcgcggag
gtctgctcgttcctggagcggtacggaccggcgctggatctccccgagatgactttcccg
cagttggagcggtatctgcgtgacactacggcagtttccaaacctctcgtggatctccat
gtgaagctgctcaggaaactagggaagtctgtgaccactgaccgctgggagaaatacctg
gctaaggtttgccaagagctgaacagcacgtgggcgtgggagctggagcagaaaggctac
caggacatgtcaatggagtgcaaatcgagcatcctgaagtatctctgcgagtgtcagttc
gatgacaacctgaagttcaagatgatgatcaacgacgaggatccagagaagatgcgactg
cagcccatcggtcgggaccggcagggtttgttgtactggatgcagctggatcaggagcag
aacatccggctgtacacggaggagcaggacgacctggatgggtccacctggaggtgcatc
gtcaggaatcgcaacgacctcgccgaggccctggagctgctgaagactcaggttgaacca
aaccagaaccaggagcagaacctgactgaatccaggagcaccagcccggcagagagaggt
gatgaagccaatgaaataaacaacgccaaatccaccagaactacagagaaaactgaccac
ataaaaacggaccctgaaatagaaaagaaacctatgaaacaagagatgaagcaggagccg
atgatcaagcaggaaaacactgaaaacgaggtgaaggaagagaagacggacaacaagacg
tccgtcttcgataaccgcgtcagcacaatcaccgccatcaaaccagaaccaagagacgtc
gccaaaaacgcagtctctgtcgtcacggcctcctgcgtgtcttcgactaaaccgaacgtg
aatgaggaggcggagcgtgccgccgtcaggagcaaccagcaggccaaaatcccgctgaag
aagcggaatcttaaactagcagacagcttccacaccaaccaccttaacagcaacagcagc
agcatcatcgtctgtaatccttccgtcatccagagtaaagacgctcatggaagagagggg
aacttcctgaactctgcagctcctgcatgtgggccggccgctcctcaacatcagctcctc
aattctgcaggtccagagctgaccaatgggagagcatctctattccagccctacaaagaa
gggcagaatggcgtcattggggtcatcggtcacgttggggtcatccgcagcccatctgag
cttcatagaacctccggttctgagaggcaggagcaaaacgggccaagcttagaacccggc
agggctgtgagggaagacaaggaagtgagtcggcagtcggtgctggtgaggaaggagccg
gcgtccagcagctttcctcttcacgaagcgagcgagtctcagacgtgcaaagcgccaccg
cctttaaaagccgacaaacttcctgaagaaacagagaaaaaagtagattctgctggtgcc
tcttcagtctgtcaggccacgggggaaacccaaaagcaggaggaggaggagcggagtcaa
gaagcgacagaacaaacaacagaggaggagtctgaaaaggccaagaatgccggacgcatc
agccgtcagcagaaggatctggaagagacgagaaaagacggtctggaaagagacttaaaa
actgaggagccagaaaaggcctccagcaatttaagtagcatttgcacagaatccaggaga
tgtgcgtcacctaaaaagacagaaaaacacagtaaaaaagaggaagaaaaaggtttgaac
ggcgggattccaggccaggcgaaggggaagagaagcgctggatctggatcagagcaggag
cgcggcgggcctttggaggaggcgtcctctgagctccagaaagaagggatccggttgaag
atcaaaattcctccacaccgcagaaacaagctgagggggaagcgaggaaaagggcaggaa
aaagacgtgcagaaggagcaggaagaggggcggctgctgaggaggtctgccaggatatgc
agatcgtcttctttaccaacctgtaggccgagctcaaaggtgaccgagatccagaggaag
aaacctccgagaaaacagccgctacccgccagagccagggatgaagaggaggcagaagag
gaggaggaagaggagcagatctcagcttcaaaggaaaacagaaaactcgttggggaagtt
agaaaactcaggggaaaacggagacacagacgaccccgatggtcaaacgttcgaacgaaa
aggcgcaaaccaaacgaagaagaagaaggcagggggcagaaagaagacggtgaagaacgg
agcgactccgaggaggaatcctgcaaatccacggagattcccagcgaggactgctgctcc
cactgcgggctgcccaatcatcccgagctgatcctgctgtgcgactcctgcgacagtgga
taccacacggcctgcctgcggccgccggtcatgctgatcccagacggggagtggttctgc
ccaccctgccaacacaagctgctgtgtgagaaactggaggagcagctgcagaacctggac
agcgctctgaagaaacgggagcgagccgagcggaggagggagcggctcgtctacgtgggg
atcagcgtggagaacatcattcctgaggaagacaaggaggaagaagagaagactaccaaa
aagaaggattgcaaaaggagcaaaaatctggggaggagatcaaccagaaccaggaagcac
atcagctacaggtttgatgatttcgacgacgccatcgatgaggccatcgaggaggacttt
ggggatctctgtggaggagcaggtaaagacatcacctccatcctgtctgaggatgtggag
cggccgatccggagccagacccgagccgccaggagcaggaggaggaggaggctgaacgac
ctggagagcgacagcacggcagcagagagcgaagacgagttcatgctgagcaacagctcg
gaggaggaggagtgtggcgcatcggggcccgatgacgacgaggaggaggacgaagaggac
atgggcagcgatggagggagctgggacaaagggaccaaacccaggaaagctctgaaggga
gtgccccggcagaaaccggggaggggccggcgccggggcaggaagcggcagtggagacgc
tccgaggaagaaagcgaggaagacatagactcggatcagtacagcgacatgagcgacagc
gaccagaaaaggcggggcctgaggcggggccagcaccagcaggtcaactacagagagacc
tcggagtcctccgacagctccagggcctccgcggaagagaagaagagcaaagctcgaaca
cgcaaggaggcgctctccagcgactacagcgactcgttcccgtcttccagagaatcagag
gaggaggattacgaggaagaggacgaggacaggaggccgatcgggaggagaagagagaag
gaggagttcaggaaaagcaggacgatagaaaagaggagacgatacaaacaccacgaagag
agagggcagcgactccggaggagacatttagaaaaggagcccgtcaaagaccggaggagg
cggctgacgaaggacgaggaagaagaggatctggagaagatgggccgggggaagaggagg
gagattctatcccagcagcggcgcagacgactcgcccagatgctgaagaaacggcggcct
tcgacggacgaggaggaggagtcgtcggaggaggaatcggagtcttcgtcagaagaggat
cggcccatccgaaaaagactcaaccgcatcgactccgacgacgaagaggacgaggaggag
gaggaggatgtgaggcggaagaccaaaaagccttcggggggggagagaacgtcggacgac
aaaaacgacagcgactctcaggaaagggggaggggccagagcccgtctgcaaacgaacat
cagacctccagaggcctgcagaagcctgggagcggcagcagttccacacccagagacggt
tcagcctcagacaggcagagcaggcacaacggcccctggcatccggaggaggaggaggag
gaggaggaggaaggtcagacggactccataaactctgtgcagaacagcccgccgtcatga
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