Oryzias melastigma (Indian medaka): 112150114
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Entry
112150114 CDS
T07439
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112150114 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
112150114 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112150114 (smx5)
03041 Spliceosome [BR:
oml03041
]
112150114 (smx5)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112150114 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
112150114 (smx5)
Spliceosome [BR:
oml03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
112150114 (smx5)
Complex C
U2 snRNP components
112150114 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
112150114
NCBI-ProteinID:
XP_024133891
Ensembl:
ENSOMEG00000002892
UniProt:
A0A3B3BAA6
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All DBs
Position
LG4:26138100..26141599
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtctttggttgggaaggacgttgtggtggagctgaaa
aacgacctcagtatatgtgggacacttcactctgttgaccagtacctgaacatcaagctg
acagacatcagtgtgacagacccagagaagtatccacacatgctgtctgtgaaaaactgt
ttcatccgtggatcggtggtccggtacgttcagctgccagcagacgaggtggacactcag
ctgcttcaggacgccgctcggaaggaagccatgcagcagaagcagtga
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