KEGG   Oryzias melastigma (Indian medaka): 112150114
Entry
112150114         CDS       T07439                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03018  RNA degradation
oml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112150114 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112150114 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oml03019]
    112150114 (smx5)
   03041 Spliceosome [BR:oml03041]
    112150114 (smx5)
Messenger RNA biogenesis [BR:oml03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112150114 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112150114 (smx5)
Spliceosome [BR:oml03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112150114 (smx5)
 Complex C
  U2 snRNP components
    112150114 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 112150114
NCBI-ProteinID: XP_024133891
Ensembl: ENSOMEG00000002892
UniProt: A0A3B3BAA6
LinkDB
Position
LG4:26138100..26141599
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttctactcgtttttcaagtctttggttgggaaggacgttgtggtggagctgaaa
aacgacctcagtatatgtgggacacttcactctgttgaccagtacctgaacatcaagctg
acagacatcagtgtgacagacccagagaagtatccacacatgctgtctgtgaaaaactgt
ttcatccgtggatcggtggtccggtacgttcagctgccagcagacgaggtggacactcag
ctgcttcaggacgccgctcggaaggaagccatgcagcagaagcagtga

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