Oryzias melastigma (Indian medaka): 112150352
Help
Entry
112150352 CDS
T07439
Symbol
hps3
Name
(RefSeq) Hermansky-Pudlak syndrome 3 protein isoform X1
KO
K20190
Hermansky-Pudlak syndrome 3 protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112150352 (hps3)
Membrane trafficking [BR:
oml04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
112150352 (hps3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS3_C
HPS3_N
Beta-prop_WDR19_2nd
Pepco
Motif
Other DBs
NCBI-GeneID:
112150352
NCBI-ProteinID:
XP_024134352
Ensembl:
ENSOMEG00000011957
UniProt:
A0A3B3BZ60
LinkDB
All DBs
Position
LG4:complement(18348185..18361953)
Genome browser
AA seq
1027 aa
AA seq
DB search
MVHVYNCHPFKSQQIVQVEQEPGLVCCGGGALFVVATGGCKVEVYNLEKEGCPLICRFAT
MGTVKSIQYSKIGDYLVTIEEKNNATYLRAYTNWRFQAEEKARVGVRLLGHLLGGASVWG
GVQMEIIEIPLSERPIAVSCCSVTGDLLVGCENTVILFTLSRQNQQNLSLRNSLTNSQQI
CNQSQGQTMSNPNLSVLDFERSVILHLPKMSLKQVALCGGYVAVHAELEVLVLKLEAASE
PAAAEEPLQTSKSAEPLQDQEDFLLIPRHQELLGSKAKDCDILVTIENTGLEEQAQYQLS
YILFRRFSPEFFQGCRMEEMQIHSLQLYPLFTSNSPEDPVCVFCFFSLSTAGYLYSLKGG
VELLSAYQYPEKVLQAVLSDHLLHVITKNALQCFTVRCSAVAARMEDPYIDTTMKACPPS
TLDVCALRIQLFIGLRSVCVYNQHVILLSAADTETQQEPERRGLSRKWTISSPKETSTAG
HGWNLYVVDTVHPFTLYQEMVEYSRRYVQTTPQSHSLRHLLSEAHLLLRASLLQTPEQKQ
SGDGDPSVSSKTCSSGAADENSAAQTSRQELEEALRQNCAQLGDCFSRASQKDCHLTLPY
YKMSGLTVGEVISRNRPTPEGPSSYGLGFLFYLKLHLLEETEQHLSQEEADEIIYIFSQS
EPFFLVSVCASPCMINCSPAQTLQILQRLEDTAGVSVPLTITMATMALRLGKPQDYTELM
ERHAEMQLVYGFIEEPRLLLHGGGEGQHTQVHPTSLAQQLANTQPGLLVAAMVALHENCK
VQLEQADFVFKELGCENTLEVDFWEAMLMASSQDAVIQELLFRLASVYIDRLTNSINERA
PQRRSLKSADDLITSCSHYGALYPWLTVLNPTHSTTSEHQEALHKLQSLLCGPSLSVGSI
MPLLERLSEETLWGFSLHLLCATRRGQYESSIEQLLDRCPQAIIAYANHQLQDKYMTLWW
QKLLPELCKRTRAAAENSILLGALKETLVVVAMETSPAEFLELIPDDGTASYFLPHLLTC
SQRHLLA
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacgtctacaactgccatccgttcaagtcccagcaaattgtccaggtggagcag
gaacctggactggtctgctgtggaggtggagccctgtttgtcgtggctacaggaggatgc
aaggtggaggtgtacaatctggagaaggagggctgccccctgatctgtcgctttgccacc
atggggacggtgaaaagcatccagtatagcaaaataggcgactacctggttactattgag
gaaaagaacaacgccacttacctgagagcttacaccaactggcgcttccaggcggaggag
aaggctcgggttggggtgcgtttgttgggccacctgctgggtggagcgtcggtgtggggt
ggagtgcagatggagatcattgagatccctctgtcagagcgtcccattgctgtttcgtgt
tgctccgtcaccggagatcttttagtcggctgtgagaacacggtgattctctttaccctg
agcagacagaaccagcagaacttgagccttcgaaattcattgacaaactctcagcagatc
tgcaatcagagtcaaggacaaactatgtcaaatccaaatctttctgttttggattttgag
cggtcagtcatcctgcaccttccaaaaatgtctcttaaacaggtggcgttgtgtggagga
tatgttgcagtgcacgcagagctggaggttttggtgctaaaactggaggcagcatctgag
cctgcagctgcagaagaaccactgcaaacaagtaaaagtgcagaacctctacaagatcag
gaagatttcctgcttattccaagacaccaggagctgctgggaagtaaagcgaaagactgt
gacattctggtcaccattgaaaacaccggattggaggaacaagcacagtaccagctgtcc
tacattcttttccggcgtttttctcccgagttcttccaaggctgcagaatggaggagatg
cagatccactcgctgcagctttacccgctcttcacaagtaattccccggaggaccctgtg
tgcgtgttctgcttcttctccctatccactgccggctacctgtacagcctgaagggagga
gtggagctgctgtcagcctatcagtatccagaaaaggtccttcaggcggtgctgtctgat
cacctgttgcatgtcattaccaaaaatgcgctgcagtgtttcacggtgcgatgctcggca
gtggcagccagaatggaagacccttacattgacacaaccatgaaggcttgtccacccagc
accctggacgtgtgtgccctccgaatccagttattcatcggtctgcgctcagtttgtgtc
tacaatcaacatgtcatcctgctgtcagctgcagacactgaaacacaacaggagcccgag
cgcaggggcctaagcaggaagtggacaatctcctcgccgaaggaaaccagtacagccgga
cacggatggaacctttacgtggtcgacactgtccatcccttcactctctaccaggaaatg
gttgaatacagccgtcggtacgtgcagaccaccccacaatcccacagtcttcgtcacctc
ctcagtgaagcacacctcctcctgcgcgcttctttgcttcaaacaccagagcagaagcag
agcggtgacggcgacccatcagtgtcctcgaaaacatgttcaagcggtgcggctgatgaa
aactcagctgcacagacgagcagacaagaactggaggaggcgctcaggcagaactgcgct
cagctgggagactgtttcagcagggcgagtcagaaggactgccacttaaccctcccctac
tacaagatgtccggtttgaccgtcggtgaggtcatctccagaaaccgtcctactccagag
ggcccttcctcgtacggccttggcttcctgttttaccttaaacttcaccttttagaggag
acagagcagcatctcagtcaggaagaagcagatgaaatcatttacatcttcagccaatca
gagcccttctttctggtcagcgtgtgtgccagcccgtgcatgataaactgcagtccagct
cagacgctccagattttgcagcgtctggaagacacagcaggtgtgtccgtcccactgacg
atcaccatggcaaccatggcgctgcgtctgggaaaaccgcaggattacacagagctgatg
gagcgacacgccgagatgcagctggtgtatgggtttatagaggagcccaggctgttgctg
cacggaggaggagaaggacagcacactcaggttcatcccacctcattggcgcagcagctg
gcgaacacccaacctggactgctggtggctgcgatggtggctttacatgaaaactgcaaa
gttcagctggaacaggccgattttgttttcaaagagctgggctgtgagaacactttagag
gtggatttctgggaggcaatgctaatggcctcctcacaggatgctgtcattcaggagctt
ctgttccggctggcatcagtttacatcgaccggctgacaaactcaatcaatgaaagagcg
ccgcagcgcaggtctctaaagagtgcagacgatctgatcacctcctgctctcattatggc
gctctgtacccgtggctcactgttctaaacccaactcacagtaccacgtctgaacaccag
gaggcgctgcacaaactgcagtctctgctgtgtggtccttccctctctgttggctccatc
atgcctctactggagcgtctgtcagaagaaaccttgtggggcttcagcctgcacctcctc
tgtgccaccagaagggggcagtatgaaagcagcattgagcagttgctggacaggtgtcct
caggccatcatagcctacgccaaccaccagttacaggataaatatatgacactatggtgg
cagaagctgcttccggagctttgcaagcggaccagagccgctgcagagaacagcattctg
ctgggggctctcaaagagaccctggtggtggttgccatggagacgagtcctgctgagttt
ttggagctaattcccgatgacggcacggcgtcgtactttctgcctcacctgctaacgtgc
agccaaagacatttgctggcctga
DBGET
integrated database retrieval system
