Oryzias melastigma (Indian medaka): 112150377
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Entry
112150377 CDS
T07439
Symbol
tprb
Name
(RefSeq) translocated promoter region b, nuclear basket protein isoform X1
KO
K09291
nucleoprotein TPR
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112150377 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112150377 (tprb)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112150377 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
HMMR_N
Motif
Other DBs
NCBI-GeneID:
112150377
NCBI-ProteinID:
XP_024134396
Ensembl:
ENSOMEG00000006153
LinkDB
All DBs
Position
LG4:complement(14742406..14763185)
Genome browser
AA seq
2371 aa
AA seq
DB search
MRMLRLTDVVGKMAALLLQELEASEISKLPKPVLNRIEKIISELQYEIDSLKAQQEQFRV
DSEQQFFEKVKELARCQEEFLTQTQEHHKLREELSNLDEQLKNAREKNREYESAQEKMSS
EQTLLSKAKENLETEKRELVRTLERRSLEVEHLNDDLKQLNEKLVEANTSKLALQMKMDE
LETAEVNIKYKENRMEQEKELLRDQTSWLTEELKAKTEELLSLSRQKGNEILELKCALEN
KQDELNKIQDQVMTLKSSNENLQKQNEDTINKLKEAKEQHATMEEKFRNELNANIKLSNL
YKGAAADSEAKSEELSRAVEELHKLLKDAGEANKALEEKVQEVNVATDKTVNELKEKIQS
LEKELDNANELLSSFKRKDAVDTSVLTEEQLTTMSPTAAAVSKIKPNMKLTELYTAYVES
NEQLQLERLENKRINKYLDNIVQEVEAKAPILKRQREEHERMQKSVASLSTKLEQAYKEV
HRMQNEADEANKRSSILERDNQRFELQVADMAQQVRVLLVELEEARGNHVVHEEEVSSAD
ISSSSEVISQHLVTFRSVEELQKQNQRLLVALRELGDSQEKEEFEATSDRRGDTEQRFEK
VQLELESLKEQRNQQIKVTESIVRQRDMYRMLLAQATGVSFTQGIPAEEFSLTSTPRRSP
AATPTAGTPTTLVSMAAESAEALEAKAALRQLQEVFTTYKKERLESDKALSEQNEKLQEQ
LSELRSQNAKTSTQLEFASKRYEMLQDNVEGYRKEIASLREKGQKMATDTQKLEQTVNTL
QEDLKTAKEKLNMAEGHAENLRKERDMLKLLESRLTQEKETILNQQQSQNLLLTNLQSIQ
ATLERSETDVRQRLNSQIEKQEREITQLQKKLEQEVEQRHLLSRNQEIQVIDLKRQLETQ
VALHQRTKEQMNVLEMELSTLRMQQGNIEGRHTLGSPSTPIIRVGSLQGLDQDREDLQAR
LKLAETRAEELAESLRTTTSSMEQYRAMAQSLEESLDNEKQVTEQARSSIEARMKEAEEQ
HRTLEEKLQGIEKEKQELEEQKRRAVATLEEEINGLKRSLSSTQEDHQTVLQRLALAEAQ
QQQALIDGQDQVKLAAEAQDKYEREMMLHAADVEALQAAKAQALQAVELRHQLEEKLQRV
TSELLEARVSWEEQEKILKEGISKVESRNEELQSQNTLLHEQVQTMSTKLAASVQQAASE
SALNISLTEEGKSQDQLLEILRFVRREKELAESRFEVAQGESLRYRLRMEHLERELKEVQ
DSLSAARERMQVTAKTLAQHDELMKKTETMSILMETNKMLREEKDKMEQELQQTQAKVEK
LEMAIMPLQQSNSELSEKSGMLQAEKMILEEDIKRWKARTQHLVSQQKDLDPEEYKRLHS
EREAHVKRIQQLSEESTRLKTELSRTNNLTTALQGQIQNLRENLSKITEERNLLQKEVST
KNQELLEKARTITQVKKIGRRYKTQYDELKGTHDKLVSDTAAGPSQDEEARQASAQELQS
LKDSLGQAQNRSKELEGQLENFSKVVTERENEVRSAQEQSTRLQADLTRLRQELQEKTSQ
EDALRQQMAEKDEKTRKALMSAKQKISLLSNTKDQLQKENEELKKQREELEVRVSALKSQ
YEGRLNRQERELRDLRGQQERQEQRDEPAEAGPSKTQEQQRSTEQRQISLKTTPTSDRGS
ATTSEPPTANIKPTPVAPTASKQPVNPGNKPTPRASIKPMITPAPVPTPTPTATVMPTTQ
VETQEVMQSTEGPPVEHVTVYGSASGSVRSASPNVQTTLASPMLTVQQPQTQATAFVQPT
QQQSVTHTEPSSQEPVVIDATPSSQVEWPSTSSSVFGTVSATAGSSAMSKRPREEEESST
VVTDTEATQEDTSRAPVPKKLRIIQRVGPEEELLTEESAEADGVVPTDSQDGEVSQTEEF
PSMEEGEEGAASQSVPTEQEVAGTQSEMPSQLQQEVIVILTDTESDEDQEEEEEEEEEQE
YEEEEEEDDEEEEDEDDEEDDGGMGEEEEESNDGSGDGNEAYEGDDPEGADVTDAGTETE
ESLGASDSTQRPADSQTPCLEGSTIEVFSTEQPISSSGVRMPPSPRRPVQQLSPRLNVHP
APSSELGPPVQQRIPVRRQSVGRLTPGVQSCVQLHEEDDRMVPCTPTLPHRPEGLDQAIH
SPQVTGVSRFRFGSPEDVPQTSSSSHSDLGQLAAQGGLGMYENPLLPSHEEESGGRSVPT
TPLQVAAPVTIFSEVAPSDTTEPASQSVPTVSTSTPLVVVVTASTADEGESSLLEPDTDR
SSSEVLVDPVVSQEDMEEPSQPADKASLPSTSQEPTSSSADTSSAPPRPSRPGPGSRFGQ
LQRWTENRGGRAKRGGQAFPSRGVSGRRFAR
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatgctcagactgacggacgttgttgggaaaatggcggcactattgctgcaggag
ttggaggcgtccgagatttctaaactacctaaaccagttctgaaccgaattgagaaaatt
atttccgaacttcaatatgaaatagattccctgaaagcacagcaggaacaatttcgagta
gacagcgaacaacagtttttcgaaaaagttaaagagctcgcccgatgtcaggaagagttt
ttgacccagactcaagaacatcacaaactaagagaggaactctctaacctcgacgagcag
ctcaaaaatgcacgtgaaaagaacagggaatatgagtctgcacaggaaaaaatgtcctct
gaacagactttgctgtcaaaagccaaagagaatctggaaacagaaaagcgggaacttgtc
agaactctggagaggagatccttggaggttgaacatttgaatgatgatttgaagcaacta
aatgaaaagttggtggaggccaacacttccaaattagctctgcagatgaaaatggatgaa
cttgaaacagcagaagttaacataaagtacaaagaaaaccggatggagcaagagaaggaa
cttctgcgtgaccaaacatcttggctgacagaggagttgaaagccaaaacggaggaactc
ctgtctctttcacggcaaaaaggaaatgagattctggagctaaagtgtgcccttgaaaac
aagcaagatgagctgaataaaattcaggatcaagtgatgactttgaagtcttcaaatgag
aatctccagaaacaaaatgaggacacaatcaacaaactgaaagaagctaaagagcaacat
gccaccatggaggaaaagttcaggaatgagctgaatgccaatattaaactctctaatttg
tataagggagcagcagcagattccgaagcaaaaagtgaggagctgagtcgagcagtggag
gagctccataagctcctgaaggatgccggagaagctaacaaagctcttgaggagaaggtg
caggaagtgaatgttgccacagacaagacagtgaatgagttaaaggaaaagatccagagc
cttgagaaggagcttgataatgccaatgagcttctgtcgagctttaaacgtaaagacgct
gtagacacatctgtgctaacagaggagcaactgacaactatgtccccaacagctgctgcc
gtgtctaaaataaagccaaacatgaagttgactgagttgtacacagcttacgttgagagc
aacgagcagttgcagttggaacggctggagaataaacggatcaataagtacctggataat
attgtgcaggaagtagaggcaaaggctcccattctcaaaagacaaagagaagagcatgag
cgcatgcagaagtcagtggccagtctttctaccaagctggaacaagcttataaggaggtg
caccgtatgcagaatgaggccgatgaagcaaacaagcgctcatccatcttagaaagggac
aaccagaggtttgaactccaggtggctgacatggcgcagcaggtccgggtgttgctggtg
gagctggaagaggctcgtggaaaccatgttgttcacgaggaggaggtgagctctgctgac
atcagcagctcatcggaggtgatcagccaacacttggtgaccttcagaagtgtagaagag
cttcagaagcaaaatcagcgtcttctggtggccctaagggagctcggtgattcccaagag
aaagaggagtttgaagcgaccagtgacaggcgcggcgacacggagcagaggtttgaaaaa
gtccagttggagctggagtctttaaaggagcaacgcaaccagcaaataaaggtgactgag
tccattgtgagacagagggacatgtaccggatgctgctagctcaagcaacaggagtcagc
ttcacccaagggatacccgctgaggagttctccctgacctctactccacgccggtcaccg
gcagccacacccaccgctgggacacccaccactcttgtttccatggcagcagagtctgct
gaagcattagaggccaaagcagctttgcgacagctacaagaggtgttcaccacctataag
aaggagcgtctggagagtgacaaggctttgagcgagcagaacgagaagcttcaggagcag
ctctcagagctgcgctctcagaatgctaagacatccactcagttagagttcgcttccaag
aggtatgaaatgctccaggacaacgtagaaggttacaggaaggagattgcatccctcaga
gagaaaggacagaaaatggccaccgacacacaaaagcttgagcagactgtcaacacacta
caggaggatctgaagactgcaaaggagaaactcaacatggcagagggccatgctgagaac
cttcgcaaagagagggacatgctgaagcttttggagtccaggctgactcaagaaaaagag
acgatcctaaaccaacagcagagccagaacctgctgctcacaaatctccagtccattcaa
gccactcttgagagatcagagactgatgtacgtcagcgcctcaacagccagatagaaaag
caggaaagggaaatcacccagcttcagaagaaacttgagcaggaagtggaacagcgccac
ctgctcagcagaaaccaggagatccaggtcatagatttgaagagacagctggaaacacag
gtggctttgcatcaacgaacaaaagagcagatgaacgtgcttgaaatggagctcagcacc
ctcaggatgcagcaggggaacattgaaggacgtcacaccctgggctccccgtccacaccc
atcatcagagttggaagccttcagggtttggatcaagacagggaagacctccaggcgcgc
ttgaagctcgctgaaacccgggcagaagagctggcagagagcctgaggacaaccacctcc
agtatggagcagtacagagccatggctcagagcctggaggagtctctggacaatgagaag
caggtgactgagcaagcccgctcatccatcgaggctcgtatgaaggaagctgaggaacag
caccgtacgctcgaggagaaactccaggggatagaaaaagaaaaacaagaattggaggag
cagaagagaagagctgtggccactctggaggaggagataaatggtcttaagagaagtctc
agcagtacccaggaagatcaccagacggtgctgcagaggctggctctggctgaggctcaa
caacaacaggctctgatagacggccaagaccaggttaagctggcagctgaagctcaagat
aagtatgagcgggagatgatgctgcatgcagctgatgtggaggctcttcaggctgcaaaa
gcccaggctttgcaggctgttgagctcaggcaccagttagaagaaaaactgcagagggtc
acctcagagttactggaggctagagtttcctgggaagaacaagaaaagatcctcaaggag
ggtatttctaaagtggagagtcgaaatgaagagctccaaagccagaatacgctcctgcat
gagcaggttcagacaatgagtaccaagctggctgccagtgttcaacaggctgccagtgaa
agcgccttgaatatatcactgaccgaggagggaaaatctcaagaccagcttcttgagatt
cttcgatttgtgcgtcgtgaaaaggagcttgcagagtcacgttttgaggtggcacaaggt
gagagtttacgctatcgcttgaggatggagcacttggaacgagagctcaaggaggtgcaa
gacagcttgagcgctgcaagagaaagaatgcaggttactgcaaagaccctggctcagcac
gatgagttaatgaagaagacagaaactatgagcatcttaatggagaccaacaagatgctg
cgcgaggagaaggacaagatggaacaggagctgcagcaaactcaagctaaggtggaaaag
ttagagatggccatcatgccgctgcagcagtcaaattcggagctgagcgagaagagcggg
atgctgcaggcggagaagatgattctggaggaagacatcaagcgttggaaggctcgtact
cagcatttagtgagtcaacagaaagatttggatccagaggagtacaagcgccttcattct
gagagagaagcacatgtcaaacgtattcaacagcttagtgaggagagcacaagactcaaa
actgagctgtccaggacaaataatctcacaacagcactgcagggacagatacaaaacttg
cgtgaaaacttgagtaaaataacagaagagaggaatttgctacagaaggaagtgagcacg
aagaaccaagaactactagaaaaggcacggactatcacccaggtcaagaagattggacgc
cgctacaagactcagtacgatgagctaaaggggacgcatgacaagctggtttctgacaca
gcggcaggcccttcacaagacgaagaggcgcgtcaagcctccgctcaagagctgcaaagc
ctcaaagattctctgggtcaagcgcaaaacaggagcaaagagctggaggggcagctggag
aacttcagcaaggttgtgacagagcgtgaaaatgaggtgcgtagtgcccaggaacagtcg
accagactgcaggcagatttgaccaggctgagacaagagctgcaggaaaaaacctctcag
gaggacgctctgagacagcagatggctgagaaagacgagaaaacccgaaaagcccttatg
tctgctaagcagaagatcagcctgctttcaaacactaaagaccagctgcagaaggaaaat
gaggaattaaagaagcagcgtgaggagctggaggtgcgagttagtgctctcaagtctcag
tatgaaggccgcctcaacagacaggagcgagagctgagagatttgcgaggtcaacaggag
agacaagagcagagagatgagccagctgaggccggtcccagcaagactcaggagcagcag
aggagtacagaacaaagacagatcagtctgaagaccaccccaacctcagacaggggcagt
gccaccacttccgagcctccgacagccaacatcaagccaacacctgtagcgcccacagcc
agcaagcaacctgtaaaccctggaaacaaacccacaccgagagcgagcatcaagcctatg
atcacccctgcccctgttcccactccaacccccactgctacagtcatgcctacaacacag
gtggaaactcaggaagtaatgcagtctacagaaggaccaccagtggagcatgtgactgtg
tacggcagcgccagcggctctgtacgttccgccagccccaacgtacagacaactttagcc
agccccatgctgaccgttcagcagcctcaaacgcaggcaacagctttcgtccagccaaca
cagcagcagagcgtgacccacacagaaccttccagtcaggagcctgtggtgatcgatgcc
acaccgagctcacaggtggaatggccttcaacttcctcttctgtgttcggcactgtttca
gcaacagcaggatcatctgccatgtccaagagacctcgtgaagaagaggagagcagcacc
gtggtgacagacactgaggcaactcaagaggacacctcccgggctcctgtaccaaagaaa
ctgcgcatcatccagagagtggggccagaggaagagctgcttactgaggagagtgctgag
gctgatggtgtggttcccacagacagccaagatggtgaagtaagtcagacagaagagttt
ccatcaatggaggaaggtgaggaaggagcagcttctcagtctgttcccacagagcaagag
gttgcaggcacccaaagtgaaatgccaagtcaactgcaacaggaagtgatcgtcatactc
actgatacagagagtgatgaagaccaggaagaggaggaagaagaggaagaggagcaggaa
tatgaggaagaggaagaagaagatgatgaagaagaagaggatgaagatgatgaggaagat
gatggaggcatgggggaagaagaggaggaaagtaacgatggaagtggagacggcaacgag
gcttacgaaggagacgacccagagggagctgacgtcacagacgctggcactgagactgag
gagagtctgggggcgtcggactccacccagaggccagctgattcccagacaccctgcctt
gaaggaagcacaatcgaggtcttttccaccgagcaaccaatctcaagttctggcgtgcgc
atgcccccgtctccacggagaccagtgcagcagctgtccccgcgtttgaatgtccaccct
gccccatcgtcagagctggggccacctgttcagcagcgtattcctgttcggcgccagtcg
gtgggtcggctcactcctggagtgcagagctgcgttcagctccacgaagaagatgacagg
atggttccctgcacaccaactcttcctcaccggcctgagggcctggaccaggccatccac
tctccccaggtgactggagtgtctcgcttccggtttggttctcctgaggacgtaccgcag
accagctcctcctcacactctgatctaggacagctcgcagcacaaggaggtcttggaatg
tatgaaaatcctttattgccaagtcatgaagaggagtctggaggacgcagcgttcctact
acaccactgcaggttgcagctccagtaaccatcttctcagaagtggcaccatccgacaca
acagagcccgcttctcagtcggttcccacggtgagcacgtccacgccccttgttgttgtg
gtaacggccagcacagcagatgaaggagagtcttccctcctggagcccgacactgacagg
tctagttctgaagtgttggtggatcctgtggtatcacaggaagacatggaagagccgagt
cagccggctgacaaagccagcctcccatctaccagccaggaacctacttccagttctgca
gatacaagcagtgctccccctagaccctctagacctggacctggttctcgattcggacag
ctgcaacgctggacagagaatcggggtgggcgtgcaaagagaggaggtcaagcctttcca
tctcgtggtgtaagcgggagacgatttgcaagatga
DBGET
integrated database retrieval system
