Oryzias melastigma (Indian medaka): 112150479
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Entry
112150479 CDS
T07439
Symbol
zgc:172302
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml02010
ABC transporters
oml04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112150479 (zgc:172302)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112150479 (zgc:172302)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oml02000
]
112150479 (zgc:172302)
Transporters [BR:
oml02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112150479 (zgc:172302)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
112150479
NCBI-ProteinID:
XP_024134608
Ensembl:
ENSOMEG00000002991
LinkDB
All DBs
Position
LG4:12850562..12880488
Genome browser
AA seq
2364 aa
AA seq
DB search
MGFFRQLYLLLWKNITYRRRHKIQLIIEIAWPLFLFLILIAVRQSHPPYKQGQCHFPNKA
LPSAGTLPWIQSIVCNVNNPCFHNPTPGETPGIAGNFNNSLLSRVFMDAQALLLGRGNLT
YTAFQDLMESVRLLGRRFESTPTVPLKDSLKANETVSTFLLTNASLPSETVDQLMNAHLN
IQVARTASQMPLKDVVCNSSLLEKMLIVEGGAANKTDLQTQLCDLPAEVLKEAESLFFSQ
IDLTKFIARELVVSNAEDLRVMSQAISTISQDLTVLTDGISSLSSFTEISVALSLLTPES
SAAEGERFKAFSKIMCGQPDTGGERIPSFNWYEDHDFKSLLGKDASEDANLGISNTTTPF
CKSLIHQLESDPRSRIVWRGIKPLFVGKLLYAPDTPAVKAVMKEVNKTFADLEVLQEVDE
AWMEVGPQIKNYMETSSDIRLLQDLLKRPEVAVLVNMRLENTPWTASQIAHFLSTPSPNA
ERKPGSPMTWLDLYNDLSHVTNTVAQVTKCISLDKLEGFESEEKLINRALELLDDRQFWG
GVFFLLPNSSTTQLPPHVSYKIRMDIDSVARTNKIKDNFWDPGPAAEPFSDLRYIWGGFV
YIQDLVERALNQVLTGIKQTTGIYIQQMPYPCFVDDVFLRVLNRSLPLFMTLAWIYTVAM
ITKSIVYEKEARLKETMRIMGLSTGTLWFSWFISSLIPFSISAALLIALLKFGNILPYSD
PTVVFFFLMAFATATIMQCFLISTFFSKANLASACGGLLYFGLYLPYVLFTAWRDHLNYT
HRILASFLSPVAFGFGCEYFSQYEEQGLGIQWFNLQSSPVEGDSYSFTTSIIMLYVDAFI
YALAAWYIEAVFPGEYGIPRPWYFIFQLNYWGGVPLEAGMPIPPAPTDQDEDNIETEPSS
MPLGVNIRNLVKIYKKGGKLAVNHLNLKFFEGQITSFLGHNGAGKTTTISVLTGLFPPTS
GTVYIKGLDIRYDMDIIRNTLGVCPQHNVLFDILTVEEHVWFYGCLKGLSEEKVKAELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDRTIILSTHYMDEAELLGDRIAIISKGKLCCCGSPLFLKSQLGSGYYLTVVKKEE
TNPSTPSGSSFSTSTNSITNKLPLAKDSESSLSEDTGLGSDESSSYLAALLALVQQHIPN
ASLVEESRREAVINLPQKAAKDGSLAILLSKLDQRLPDLGISSYGLSDSTLEEIFLRVAE
ETGVDAEPEQQEESPRSQQPSGQRAEEQPTEQPEPGKKRLRKKEPLETDLLSGDGRGGEP
LSGSWLMWQQLKALFIKRWLYALRSRRGFFAQIVLPALFVLVALLFSLIVPPFGRYPSVE
LQPWMYGKQYTFFSNDAPGNPAMENLLEALLDQPGFGTKCMEKEEENKTTCEVERGGRFT
RPQVSFSMWQMFSKGNWSKERPSPECQCSSEEVYRMLPECPEGAGGLPPPQIKRATGDIL
QNLTSYNVSDYLVKTYAQILRKSLKTKKLVNEFRYGGFSLGGKVTQTDVDVDHVEESVST
FRRRYQVTQNGSLDNLLNKLPAFLEGLHSKDNVKVWFNNKGWHSMVSFVNIMNNGLLRAS
LPPGPERRTHGISAYNHPINLTKDQLTEVALMATSVDVLISICVIFAMSFVPASFVLFLI
EERASKAKHLQFVSGVKPVLYWVTNYVWDMLNYAVPAAMVVLIFICFQQKSYVSEQNLPA
LILLLLLYGWSITPLMYPASFVFTVPSTAYVILTSINLFIGINCSMATFVLELFVDENLN
AINKILKKVFLIFPHFCLGRGLIDMAKNQAMADAFHRLGTRPVLDPFQWDFVGKNLFSMA
ASGVVYFIFTILLQYKFFIHLKRLIPCWGEPQLPPIGPEDEDVARERARIMSGKFQSDIL
TMIDLSKVYKVGKNPAVNRLCLGIPPGECFGLLGVNGAGKTSTFRMLTGDTPITHGEAFL
DRHSVLTEMGRVHQLMGYCPQFDAISDLLTGREHLELYARLRGVPEESVSKVVQWGVRKL
GLTQYAEQKAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCIHSVTK
EGKAVVLTSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIILRLADSDSCS
VNEYMTKSFPNIELKEQHQNVLQYHLPSHACCLALVFDVLANNSEELGVTDFSVSQTTLD
QVFISFAKDQTDDCLTDVIISNGLAQSNFPARLASPAVQPQPPVTPPPQRKSPLLSEKSP
QINSTSGKAKRTGSSSKSSKEKSGGIGMSRLTQKMGSGGSNSSSGGSSSNAQGESSKSHG
SKRNSSKDPSELFIVSNSSQDSSL
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atggggtttttccgtcaactctatctcctgctctggaaaaacatcacataccgccgaaga
cacaagattcaactgatcattgagatagcctggccactcttcctgtttctcatcctcatc
gctgttcgtcagtcacatcccccttacaaacaaggacaatgtcatttcccgaacaaagcc
ttgccgtcagctggcacgctgccctggattcaaagcatcgtctgcaacgtcaacaacccc
tgcttccacaaccccacgccgggggagacaccaggcatagctggaaacttcaacaactcc
ctattgtctcgtgtgttcatggacgctcaagctctcctgttgggccgtggaaatctgacg
tacactgcctttcaggacctgatggagagtgttcggctactcggaagaagatttgagtca
acgccaactgtcccgctcaaagactccctgaaagccaatgagaccgtttccacctttctg
ctcaccaatgccagcttaccgtctgaaactgtggatcagctgatgaacgctcatcttaat
atacaggttgctcggactgcatcccagatgcctcttaaggatgtcgtgtgcaatagtagc
ttgctagagaaaatgcttattgtagaaggaggagcggccaacaagactgatcttcaaact
cagctgtgcgacctcccggctgaagtcctgaaggaggctgagagccttttcttcagccag
attgacttgaccaaatttatagcgagagaacttgtcgtgtccaatgctgaagatcttcga
gtcatgagtcaggcgatcagcaccatttcccaggatctgactgtactcacagatggcatc
tcctccctgtccagttttacggagatcagtgttgctcttagtcttctcactcctgaaagc
agcgcagctgaaggagaacgtttcaaagctttttcaaagatcatgtgtggtcaaccggac
actggcggtgagcgtatcccgtcgtttaactggtatgaagaccacgacttcaagtctttg
ttgggtaaagacgcatcagaggatgcaaatctgggcatttctaacaccacaactcctttc
tgcaagagtctgattcaccagttggagtcggaccctcgctctcggatcgtgtggcgagga
atcaaaccgctgtttgtaggaaaactgctgtacgcacctgacactcctgcagtgaaagcc
gtcatgaaagaggtgaacaaaacgtttgcggaccttgaagttctgcaggaggtggatgaa
gcctggatggaggtgggacctcaaatcaagaactacatggaaacgagttcagacattcgt
cttctacaggatttgttgaagcgtccagaggtggcggtattggtgaacatgcgtctggaa
aacacaccgtggacggcctctcagatcgctcatttcttgtctacgccctcaccaaacgct
gaaagaaaaccaggttcaccaatgacctggctggacctctacaatgacctcagccatgtg
accaacactgtggcacaagtcactaagtgcatctccctggataagttggaggggtttgag
tctgaggaaaagctgatcaacagagctctggagctgttagacgaccggcagttttgggga
ggtgtctttttcctgctgcctaattcctccacaacccagttaccgccgcatgtctcctac
aagatccggatggacattgatagtgtggctcggaccaacaagatcaaggacaacttttgg
gatcctggcccagctgctgaaccatttagtgacctgcgctacatttggggtggatttgtc
tacattcaggatctggtggagagagctctgaaccaggtgttgactggaataaagcaaacg
acgggcatctacatccagcagatgccctacccctgttttgtggatgatgtgtttttacgg
gtgctgaaccgctcactgccactcttcatgaccctggcctggatctacacagtggctatg
atcaccaaatctattgtgtatgagaaggaagccaggctgaaggaaaccatgaggattatg
ggtctgagtacaggaacgctgtggttcagctggttcatcagtagtctgattcctttctca
atttctgcagcactcctcattgctctgctcaagttcggtaacatactgccatatagcgat
ccaactgtggtcttctttttcctcatggcgtttgccactgcaaccatcatgcaatgcttt
ctaattagcacgttcttcagcaaggccaacctggcctctgcctgcggaggactcctctac
ttcggcctctacctgccttacgtgctcttcaccgcctggagggaccacctcaactacaca
caccgaatattagcaagtttcctgtcccccgtggcctttggctttggctgtgaatatttc
tcacagtatgaggagcagggtctgggtatccagtggtttaacctgcagagcagccccgtg
gaaggagactcgtacagcttcaccacctctataatcatgctctacgtggatgcttttatc
tatgcgctcgcagcctggtacatcgaagcagttttccctggtgagtatgggatccccagg
ccctggtacttcatctttcagctcaactactgggggggtgttcctcttgaagccggcatg
ccaatcccaccagcgcccacagaccaggatgaagataacattgagacagaacccagtagt
atgcctctgggtgtgaacatcagaaatctggtgaaaatctacaaaaagggaggaaaactt
gctgtcaaccacctgaacctgaagttctttgaaggccagatcacatcttttcttggtcac
aatggagcggggaaaaccaccaccatctctgtcctgactggcctcttcccgcccacctct
gggactgtgtacatcaagggcctggacatccgctacgacatggacatcatcaggaacacg
ctgggagtttgtcctcagcacaatgtcctgtttgacatactcacggtggaggagcacgtc
tggttttacggatgtctgaagggtttgtctgaggaaaaggtgaaggctgaacttgacact
ttgctggaggacgtcggcctgttgcacaagcggcacgagcaaaccagaaacctctctggt
ggcatgcagaggaagttgtcggtggcgatagcgtttgtcggaggctccaaagtggtcgtt
ctggacgagcccacagctggtgttgatccatattcccgtcgagggatctgggatctgctg
ctcaaataccgcaaagaccggaccatcatcttgtccacgcactacatggacgaggcggag
ctgctgggggatcggatcgccatcatttccaaggggaagctgtgctgctgcggatcaccg
ctcttcctcaagtcccagctgggctctggctactacctgactgttgtgaagaaggaggaa
accaaccccagcactcccagcggctcgagtttctccaccagcaccaactccatcaccaac
aagctgcctctcgccaaggactctgaatcttctctgagtgaagacaccgggctgggaagt
gacgagagcagctcatatctcgcagcgttgcttgctctggtgcagcagcacatacccaac
gcgagtctagtggaggagtccaggcgagaggcggtgatcaacctgccgcagaaagccgct
aaagacggcagcctggcgatcctcttatccaaactggaccagcggcttcctgacttgggc
atcagcagctacggtctgtcggacagcacgctggaggagatctttttgcgagttgctgaa
gaaaccggcgtggacgcggaaccggagcagcaggaagaatctccacgcagccagcagccg
tccgggcagagagcggaggagcagccgaccgagcaacctgagccaggaaagaaaagactc
cgtaaaaaagagcctttagaaacggacctgttgagtggagacggtagaggaggggagcct
ctgtcaggatcctggctgatgtggcaacaactgaaagctctcttcatcaagcgctggctc
tacgctctcaggagccgcagaggattcttcgctcagattgttcttcctgctctgtttgtc
ctggtcgccttgctcttcagcctcattgttccaccttttgggaggtacccttctgttgag
ttacagccctggatgtacggaaagcagtacacattctttagcaacgatgctcctggaaac
ccggccatggagaacctgctggaggctttgctggaccagccgggctttggtaccaagtgc
atggaaaaggaggaggagaacaaaacgacctgtgaagtcgagcgaggcggtcggttcacg
agaccccaggtgtcgttttccatgtggcagatgttcagcaaaggaaactggagcaaagaa
agaccctcgcctgaatgtcagtgcagctcggaggaagtctatcggatgctccccgagtgt
ccagagggtgcaggggggcttccacctccacagataaagagagcaactggagacatcctc
caaaatctaacgagttataatgtctctgattacctggtaaagacgtacgctcaaattctg
aggaaaagccttaaaacgaagaagttggtgaatgaattcagatatggaggcttctctctc
ggcggaaaagttacacaaactgacgtggatgttgaccacgttgaagaatctgtgtcgact
ttcaggagacgttaccaagtaacgcagaacggctcgcttgacaacctgctaaacaaactg
ccagcgtttctggaaggactgcacagtaaagacaacgtcaaggtgtggttcaacaataaa
ggctggcactccatggtgtcttttgtcaacatcatgaacaacggccttttgagagccagc
ttaccaccaggcccagagaggaggacgcatggcatcagcgcctataaccacccgatcaac
ctcaccaaggatcagctcaccgaagtggccctgatggctacatcagtggacgtattgatc
tccatctgcgtcatcttcgccatgtcctttgtgccggccagctttgtcctgtttctgatc
gaggagcgagccagtaaagccaaacatctgcagttcgtcagtggcgtcaagccggtcctc
tactgggtgacaaactatgtgtgggacatgctgaactatgccgtcccggctgccatggtg
gtgctgatcttcatctgtttccagcagaagtcgtacgtctctgaacaaaacttgcccgct
ctcatcctgctgctcctgctctatgggtggtccataactcccctgatgtacccagcatcc
tttgtgttcaccgttccgagcacagcttacgtgattctcacctccatcaacctcttcatc
ggcatcaactgcagcatggccacctttgttctggagctgtttgtagatgagaatctgaat
gcaatcaacaaaatattgaagaaagtgtttttaattttccctcacttctgcttgggacga
ggccttatcgacatggctaaaaaccaggccatggcagacgccttccacagactgggtacc
agaccagttctggatccttttcagtgggactttgtgggaaagaacctcttttctatggca
gcttcaggcgtcgtctacttcatcttcaccatcctgctgcagtacaagttcttcattcac
ctcaagagattgataccgtgctggggggagcctcagctgcctcctattggtccagaggac
gaggatgtggcgagggagcgagcgaggatcatgagtggaaaatttcagtcagatatcctc
accatgatcgacctgagcaaggtgtataaagtcggtaaaaatccggctgtgaatcgtctt
tgcctggggattcctcccggtgagtgttttggcctgctgggggtaaacggagcaggaaag
acgtccacgttccgcatgctgaccggagacacgcccatcacacacggagaggcgttcctg
gaccgtcacagtgtgttaacagagatgggccgagtccaccagctgatgggttactgtcca
cagtttgatgccatcagtgacctgctgacgggtcgggaacatctggagctttacgctcgc
ctgcgaggagtgccagaggagtctgtttcaaaggtggtgcagtggggggtaagaaagctg
gggctgactcagtacgcagagcagaaggctggaggctacagcggaggaaacaagaggaaa
ctctccaccgccatctcgctcatcggagctccgcctgttatcttcttggatgagcccacc
accggcatggacccaaaagccaaaaggtttttatggaattgcatccatagtgtcaccaaa
gaaggcaaagctgtagtgctcacttcacacagtatggaggagtgtgaagctctctgcacc
aggatggccataatggttaacgggcgctttcagtgtctggggtctgtgcagcacctgaag
aacaggtttggggatggatacaccatcatcctgcgcttggcggacagcgactcgtgctct
gtgaatgagtacatgaccaaatcctttccaaacatcgagttgaaggagcagcaccagaat
gtcctgcagtaccacctgccctcacacgcctgctgcctggctctggtctttgacgtgctg
gccaataacagcgaggagctgggcgtcacagacttctcggtctcacagaccacgttggac
caggtgttcatcagcttcgctaaagatcaaacggatgactgcctcacagacgtgatcatc
agcaacggcctggctcagtcaaacttccccgctcgactcgcctcccccgctgtccagcca
cagccacccgtcactcccccgccgcagaggaaatcccccctcctgtccgagaagtcgccc
cagatcaattccacgtccggcaaagcaaagaggaccggcagcagcagcaagtctagcaaa
gaaaagagcgggggcatcggcatgagcaggttaacgcagaagatgggcagcggcggctcc
aacagcagcagcggcggcagcagcagcaacgctcagggagaatccagtaaatctcacggg
tccaaaaggaactccagtaaagatccgtctgagctgtttatagtcagtaacagctcacag
gacagctcattgtaa
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integrated database retrieval system
