Oryzias melastigma (Indian medaka): 112150587
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Entry
112150587 CDS
T07439
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112150587 (upf1)
03015 mRNA surveillance pathway
112150587 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112150587 (upf1)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112150587 (upf1)
5.6.2.5 RNA 5'-3' helicase
112150587 (upf1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112150587 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112150587 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
112150587
NCBI-ProteinID:
XP_024134762
Ensembl:
ENSOMEG00000003665
LinkDB
All DBs
Position
LG4:13311461..13330242
Genome browser
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGLDDSVAKTSQFLGELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTAALEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSSTAGRPSNMYFQTHDQIGMIGAGPGHMAA
MNIPIPFNLVMPPMPPPSYLGQANGPAAGRGGMKGKPGRSGRQRVRGIGNQGPGQVNGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctctcagaccctcaccttcctggacaccgaggaa
gcggagctgcttggagcggacacacaaggctccgagttcgacttcactgacttcactctc
cccagccagacgcagacgcaaggccagactcagagccaactggacggccaggtgaatgga
ccggacgaggggctgcacaacgggggactggatgattctgtggccaagaccagtcagttc
ttgggcgaactgaactttgaggaggatgaggaagatgcgtactacaccaaagacctacct
gtgcacgcttgcagctactgtggtattcatgacccagcatgtgtggtgtactgcaacacc
agtaagaagtggttctgtaatggacgtgggaacacatctggcagccacattgtgaatcac
atggtgagggccaaatgcaaagaagtgaccctgcataaagacgggccgctgggcgaaacg
gtgctggagtgctacaactgtggctgccgcaacgtcttccttctgggcttcatccctgcc
aaagccgattccgtggtggttctcctctgcaggcagccctgtgccagccagagtagccta
aaggacatcaactgggacagctcccagtggcaaccactgattcaggaccgctgctttctg
tcctggctggtgaagatcccgtcggagcaggagcaactgcgagctcgtcagatcacggct
cagcagatcaataagctggaggaactctggaaggataatcccaccgccgcgctggaagac
ttggagaagcctggcgtggacgaggagcctcagcacgtgttgctgcgttatgaggatgct
taccaataccaaaacatctttggtcctttggtcaaactggaggctgactatgacaagaag
cttaaggagtcacagactcaagacaacataacagtcaggtgggacctggggctgaacaag
aagcgcattgcttatttcacactgcccaagacagactcagacatgcgcctcatgcaaggt
gatgagatctgcctgcgttacaagggagaccttgcccctctgtggaagggcattggccat
gtcatcaaagtccctgacaactacggggatgaaattgccattgaactgaggagcagcgtt
ggagctcctgtggaaatcccacataacttccaggtggattttgtgtggaaatccacctca
tttgacaggatgcagagcgccctgaagacctttgctgttgacgagacgtcggtctccggc
tacatttaccacaaacttttgggccacgaggtggaggacgtgaccatcaagtgccaactg
ccgaagcgcttcaccgctcagggccttcctgacctcaatcactcacaggtctacgcagtg
aagacggtgctgcaaaggcctctgagtttaatccagggccctcctggcactgggaagact
gtcacgtctgccacaatcgtgtaccacctgtcccgccagggcaatgggcctgtcctggtg
tgtgctccaagtaacattgctgtagatcagctcactgaaaagattgataagactggcctg
aaggttgtccggctgtgtgctaagagcagagaagccatcgagtcgccggtgtctttcctg
gcactccacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcagcag
ctgaaggatgagactggagagctgtcgtctgcagatgagaaacgttacagagccctgaag
cgcaccgctgaaagggagctgctcatgaacgctgatgtgatttgctgcacctgtgtcggg
gctggggatccccgtttggccaagatgcagttccgctccatcttgatcgatgagagcacc
caggccaccgagccggagtgcatggtgccggtggtgctgggagccaaacagctcattctg
gtcggtgaccactgccagctgggccctgtggtgatgtgcaagaaggcagcgaaggcgggc
ctgtctcagtctctgtttgaaagattggtggttctgggaatccggccaatccgcctgcag
gtccagtaccgcatgcacccggctctgagcgccttcccctccaacatcttctatgagggc
tcgctgcagaacggggtcacagcagctgatcgcatcaagaaaggcttcgacttccagtgg
cctcagccagacaagcccatgttcttctatgtgactcagggtcaggaggaaatcgccagc
tctggaacctcgtaccttaacaggactgaggctgccaacgtcgagaagatcaccaccagg
ctgctgaaggcaggagccaaaccggatcagatcggcatcatcaccccctacgagggtcag
cgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaaactttatcag
caagtggagattgccagcgtggatgccttccagggcagagagaaggacttcatcatcctg
tcttgtgttcgtgcaaacgagcaccagggcatcggtttcctgaacgaccctcgtcgtctc
aacgtggcgctgaccagagccaagtacggcgtgataatcgtggggaaccccaaggcgctc
tctaagcagcctctgtggaacaacctgctgaacaactacaaggagcagaaggttctggtg
gagggaccgctcaacaacctcagagagagcctcatgcagttcagcaaacctcgaaaactc
gtcaacaccatcaacccggggggccgtttcatgagcactgccatgtatgatgctcgagag
gccctcatccccggatctgcatatgatcgaagcagcactgctggacgaccgtccaacatg
tactttcaaacacacgaccagattggaatgattggggcgggcccgggtcacatggccgca
atgaacatccccataccgttcaacctggtgatgcccccaatgcctcctcccagctacttg
ggtcaggccaacggccccgctgcaggccgtggtggtatgaaaggaaagcccgggcgcagc
gggcggcagagggtccgcggcatcgggaaccagggtcccggtcaggtcaacggaccaaac
agccaggccagccaggatggggcctcccagtctttctctcaggggccgctgactcagggc
tacatctctatgagccagccctctcagatgagccagcccggcctgtcccagcctgagctg
tctcaggacagctacctgggtgatgagttcaagtctcaaatcgacgtggctctgtcccag
gactcgacctatcagggcgaacgtgcgtaccagcatggcggagtgaccggactgtcacag
tactaa
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integrated database retrieval system
