Oryzias melastigma (Indian medaka): 112150909
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Entry
112150909 CDS
T07439
Symbol
rnf220b
Name
(RefSeq) E3 ubiquitin-protein ligase RNF220 isoform X1
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112150909 (rnf220b)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112150909 (rnf220b)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112150909 (rnf220b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-C3HC4_3
zf-RING_5
Pox_A_type_inc
zf-C3HC4
zf-RING_2
Endonuclease_7
zf-RING_UBOX
zf_C2H2_ZNF598
Motif
Other DBs
NCBI-GeneID:
112150909
NCBI-ProteinID:
XP_024135213
Ensembl:
ENSOMEG00000013214
LinkDB
All DBs
Position
LG4:7739357..7784408
Genome browser
AA seq
555 aa
AA seq
DB search
MDLHRPFKMDSSSYLPAPLASPALMVLASTAEAGRDASVPCQAPRPFGVPVSMEKDLHLP
FPSASYTFTSMYQRQGPLSGAFPTRDFPASLMHLHPQFTPPNLDCSTLGMLNHSGVGAFR
PFSSPQEERESGGYQSAFTPAKRLKSCFPEVEGKEFDFSSLKAGEETGRKLFSMSGLLSD
GEASLSPEERKEQSKVKGLYDTQAPVCPVCQTVLRPAELHEHMEQELAKLAQMQISPTPV
QHEQFLRTPKSLPLSLRIKREGGSPTSPPRPSEDAHSDRYQTFLRVRSNRHTRLNVDDLC
WCRCYVKSGPLRPHSAGAHLDCTQAVRIGKLKRRKPEEGQEGSADLTTLENDWNERTRIQ
MTSAGFKAGAVLVRTTSKEFRDSDVDLDVDGDDTLEYGKVQYTETDVIPCSGESSKESAV
NSSRNVLPESRGNTDFTKWSNDGSPSTSAAEKLDSGATSLSKNCKNTNVETLSEDSALTT
LDALKARIRDLEKQLSKGDRFKCLICMDTYTTPLTSIQCWHVHCEECWLRTLGAKKLCPQ
CNTITSPGDLRRVFL
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggacctccaccgccccttcaagatggacagctcctcctacctgccagctcctctggcc
tcccccgctctgatggtcctcgcctccaccgcggaggctggccgggacgcctcggtcccc
tgccaggcgcccagacccttcggtgtcccggtctcaatggagaaggacctccacctcccc
ttcccctccgcctcctacaccttcacctccatgtatcagcggcagggccccctgtcgggc
gccttcccgacccgagacttcccggcctccctcatgcacctccaccctcagttcacgccg
ccaaacctggactgctccactctaggcatgcttaaccacagcggcgtgggcgccttccgg
cctttctcctccccgcaggaggagagggagtctgggggttaccagtcggccttcaccccc
gccaagagactgaaaagctgcttccctgaagtggaggggaaggagtttgactttagctcc
ctgaaagctggggaggagacggggaggaagctgttctccatgtccggcctgttgtctgat
ggagaggcttctttgagcccggaggagcgtaaagagcagagcaaggtgaagggcctgtac
gacactcaggccccggtgtgtcccgtctgccagaccgtcctgcgcccggccgagctgcac
gagcacatggagcaggagctagccaaactcgcccaaatgcagatcagtcccactccggtg
cagcatgaacagtttctgaggacgccaaagtcgctgcctctctcgctgcgtatcaagcgc
gaaggaggctctcccacctcgcctcctcgaccgtcggaggatgcacactcggaccgatac
cagacgttcctcagagtgcggtccaacagacacacgaggcttaatgtcgatgacctctgc
tggtgcaggtgctacgtcaaatccggcccactgcggccgcacagcgcaggagcccaccta
gactgcacacaagctgtccggattggaaaactgaagagaaggaaaccagaagaaggacag
gaaggttcagctgatttgacgaccctggagaacgactggaatgagaggacgaggatccag
atgacatctgcggggtttaaagcaggtgcagtgttggtgagaaccacctccaaagagttt
cgggacagcgacgtggacctggacgtggatggagacgatactctggagtatggaaaagtg
caatacacagaaacagatgtcatcccctgttcaggtgaaagctccaaggagtccgcagtc
aacagcagcaggaacgttttaccagagtccagagggaatacagattttaccaaatggtca
aacgatgggagtccatctacgagcgctgcagagaaactcgacagtggagcaacaagtctc
tccaaaaattgcaaaaacacaaacgtagaaacgctctcagaggactccgcattgacaaca
ttggatgcacttaaagctcggatacgagatttggagaaacagctgtctaaaggagacaga
tttaaatgcctcatctgcatggacacatacacgacccctctgacctccatccagtgttgg
catgtccactgtgaggagtgctggctacgaactttgggtgcaaagaagctgtgtccccag
tgtaacaccatcacatcccccggagacctccgacgggttttcctctaa
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