Oryzias melastigma (Indian medaka): 112151221
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Entry
112151221 CDS
T07439
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112151221 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112151221 (topbp1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112151221 (topbp1)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
112151221 (topbp1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
112151221 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
112151221
NCBI-ProteinID:
XP_024135763
LinkDB
All DBs
Position
LG20:5096989..5117207
Genome browser
AA seq
1493 aa
AA seq
DB search
MSKVEKERFIVKFVESKRSNTEYAAKAYEAILELQSEKYLKKVKEEDVLKMEEKDKSLFV
FSSFTTKAFLHCKKLGCRIVSPLVVLYCLQQQRCVPKAEKPVYNMAMADVTISCTSLEKA
ARVDVMDLVQLMGGRACLDLNVSVTHLIAGEVGSKKYLVAANLGKPILLPAWVKTCWEKS
QDCLFRYTDLPLDVYLCPVLMGCTVCVTGLSSAERKEVQRVCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIDKGFCQDESRYTVERQASHTNRPHTSTPT
GNGTKEDGPSLLGLSNISVSTSVAVNDTAFTISRLETADPIEGLDLTVCPAEDLLDGCKL
YLCGFPLKKLEKLRRLVNNAGGLRFNQPSEELTHVVMGELDQELNKFLPKAVYRPHVVTV
QWLLDSYSRGRLLPEAEYLHPDCLPPDSTPVPAAHVVKPRLSAGPPLSSPVTPKQSRLEE
DLLSQYMDDDPTVVDMPPPAADCSSRKSVAAEVHPRPPSLSRGAEQDSTLQEFCGTELFS
GKSFLFVGFGGEAEAQLSSLAIEHGGKVLAGRSRVVADYAVVPLLGCSVEATVDEVVTDT
WLAVCVEKESVLAPSSNPLFTPVAVREGCFPLEGCVLSVSQFIGAERESLIELAKHVGAD
VQDYFVRFAIKKKGMVASTHLVLQSPDGTKYQAAKKWGLPAVSMLWILESARTGQKAAEE
KFLVDLPPSPEREDESFVGGSQKPAPAARNSPEIPLPGPQSGKAVTPLDLGRFQSKVFRS
VLDEMKPKDGLGTPKESSKRKEASLQLDTPSRFLSRDQLFRPSFNVKDALGALETPAGRL
KPGEKAETPLTDVVNRNLKVALANSSRNNISEMEAVSASPQLGKCTNEEKEPQKEAGPLV
GVVVCVGKKLSRMQTELNAVAASLGADFRWAFDDTVTHYIYQGRVGDNSREYKGAKERGV
HVVSQCWLQACADEQRRVPESLFPFTYNPKMSLNLSQVPSSSQRSPPLTRTQRRDAAAAK
LSFSEEAPDLRRVSDGSVEPEDLDHSERTDTLEMRENLQKQLQEIMSATKLTTGRRTSVR
LARMGSGGADSGPHTPEGSRMGRSGSRRTLEALRVSREAALDVNTEPSQSEQIVWDDPTA
REERAKLADNLQWPGSPSQYLDPLAPPPPSTAEPGPQMKDSMTDSELVEMAACDVIDQHM
GQKLITPPSEEADDDILTPKAPSIAFPLAKPAVAPEPPKEEEKKEKQPPRFQMSSLSPQE
RIDYSHLIEDLGGIVLEKQSFDPSCSHIIVGSPLRNEKYLAAMAAGKWILHRSYLEACRC
MGGFIQEEDFEWGSSSILDALPSITSQQRKLASAAMRWRKALQGSKESQGAFSGWTVMLN
IDQSRESGFRRLLQSGGAMVLPGPSPSLYREATHLFADFSRLKPEDFKVDVAEARSLGVK
CLKPEYIADYLMQVPTPPVELYFLPAAEDAPDTPSRKRKAEPNASRLKKSRLN
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagtggaaaaggagcgcttcattgtgaagtttgtggagagtaaaagatccaat
acagaatatgctgctaaagcctatgaggccattttggagctgcagtctgagaagtattta
aagaaggttaaagaggaagatgttttaaagatggaagagaaggacaagtctctgtttgtt
ttcagcagttttacaactaaagcatttctgcactgcaagaagcttggctgcagaatcgtg
agccccttggtggtgttgtactgcctgcagcagcagcgctgcgtcccaaaagcagagaag
cccgtctataacatggccatggctgatgtcaccatttcctgcaccagcctggaaaaagct
gcacgagtggatgtgatggatctagtgcagctcatgggcggacgggcctgtctggatctt
aatgtgtccgtcacacatttaattgcaggagaggttggaagcaaaaaatatctggtggcc
gccaacttgggtaaacccatcctcttacccgcatgggtcaaaacctgctgggaaaagtct
caggattgtctttttagatacacagacttgcctctggatgtatatttgtgtccggtgctg
atgggctgcactgtttgtgtgacgggcctgtccagcgcagaacgcaaagaggtgcagcgc
gtctgtgaacagcacggcgccaaatacaccggccagctcaaaatgaatgagtgcacgcac
ctcatcgtcagtgaaccaacaggtcagaagtacgagtgcgctcgtaagtggaacgtgtac
tgcgtgtctctgcattggctgttcgacagcatagacaaaggtttctgtcaggacgagagc
cggtacacggtggagcgccaggcgtcacacaccaaccgaccgcacacctccacccccact
ggcaacggaacgaaagaagacggtccttcgcttttgggcttgagcaacatttctgtcagc
accagcgtggcggttaacgacacggccttcaccatcagccgcctggaaacggcggacccc
atcgagggtttggatctcacggtttgtcctgctgaggatttactggacggctgtaagctg
tatttgtgcggttttccactgaagaagctggagaagctgcggcgtctcgtcaacaatgcc
ggaggtttgcgtttcaaccaaccgagcgaggagctcacacacgtggtgatgggagagctg
gaccaggagctcaacaagtttcttcctaaagcagtttatagacctcacgtcgtcaccgtg
cagtggctgctggacagttactccagaggcagactcctccctgaagccgagtacttgcat
cccgactgtctgcctcccgactctacacctgtgcccgccgctcacgtggtgaagcctcgg
ctttctgccggtccacctctctccagccccgtcacgcccaaacaaagccggctggaggag
gacctgctctcccagtacatggatgatgatcccaccgtggttgacatgcctccaccagct
gctgattgcagcagcaggaagtctgtcgctgcagaagttcaccctcggcctcccagcctc
tccagaggagcggagcaggactcgactctgcaggaattctgcgggaccgaactgttttct
gggaagtcttttcttttcgtgggctttggcggcgaggccgaggcgcagctttcctcgctg
gcgattgaacacggaggaaaagtgctggctggccgctctcgcgtggtggccgactacgcc
gtggttcctctgctgggatgctcggttgaggccacagtagacgaggtggtcacggacacg
tggctggccgtgtgcgtggagaaggagagtgttctggcgccgtcctccaacccgctgttc
acgcctgtggctgtgagggagggctgctttcctctggagggctgcgttctctcagtcagc
cagttcatcggagcagagagggagtctttgatcgagctggccaagcatgtcggagccgat
gtccaggattactttgtgcgctttgccattaagaagaagggcatggtggccagcactcat
ctggttttgcagagtccagacggcacaaagtaccaggcagcaaagaagtggggcctcccg
gctgtgagtatgctctggattctggaatcggcccgaacgggacagaaggcagcagaggag
aagtttctggttgatctgcctccttcaccagagagggaggacgagagcttcgttggcggt
tcccagaaaccggctccggcggctcgtaactctccagaaatccctctgccgggtccgcag
agcggaaaagctgtcacccctctagatttgggtcgctttcagagcaaagtgtttcgctcc
gttctggatgagatgaagcccaaagacgggctcggcactcccaaagagagcagcaaaaga
aaggaggcgtcgctgcagctggacacgccctcccgcttcctcagcagagatcagctcttc
cggccgtccttcaacgtcaaggatgcactcggagctttggaaacgccagccgggaggttg
aaacccggcgagaaggcggagactccactgaccgacgtcgtcaacaggaatctgaaagta
gctttggctaatagctcaaggaataatatctcagaaatggaagcagtttctgcaagcccc
caattgggaaaatgcaccaacgaggagaaggagccacagaaagaagccggaccgctggtg
ggagttgtggtctgtgtgggaaagaagctgagcagaatgcagactgaactgaacgccgtc
gccgcctcgcttggagcagacttcaggtgggcttttgacgacacggtgacgcactacatc
taccagggccgggtgggcgacaacagccgtgaatacaaaggagccaaggagaggggggtg
catgtggtctctcagtgctggctgcaggcctgtgctgatgagcagaggcgagttccagag
tccctgtttcctttcacctacaaccctaagatgagcctcaacctgagccaggttcccagc
agctcccagagatctccacctctaacacgaacacaacggagagacgctgctgcagccaag
ctgagtttttcagaagaagctccagatctgcgccgtgtgagtgatggaagcgtggagccg
gaagatctcgatcactcagagaggacagatactctggaaatgagggagaacctgcagaaa
cagctgcaggagatcatgtcagccaccaaactgacgacaggcagacgcacgtccgtcagg
ctggcgaggatggggtcaggcggcgccgactcgggcccccacacacctgaagggagccga
atgggacggagtggaagcaggagaactctggaagcgctcagagtttccagggaagcagct
ctagacgtgaacacggagccgtcgcagagcgagcagatcgtctgggacgacccaacagcc
agagaggagagggccaagctggcggataacctgcagtggcccggcagcccctcgcagtac
ttggaccccctcgcgccccctccgccctccacggcagaacccggaccacagatgaaggac
tccatgaccgactccgagctggtggagatggctgcctgcgacgttattgaccagcacatg
gggcagaagctgattacccccccgtcagaggaggcagacgacgacattctcacgcctaaa
gctcccagcatcgcttttcctctcgccaaacctgcagtagcgcccgagcctccgaaagag
gaggagaagaaagagaagcagccccccaggtttcagatgtcgtccctcagccctcaggag
cgcatcgattacagccacctcattgaggatctggggggcatcgttctggaaaagcagtcg
tttgaccccagctgctcccacatcatcgttgggagtcctctgcgtaacgagaagtatctg
gcagcgatggcagccgggaagtggatcctgcaccgatcctacctggaggcctgtcgctgc
atgggcggattcatccaggaggaggacttcgagtggggcagcagctccatcctggacgcg
ctgccgtccatcacctcgcagcagcgcaaactcgcatccgctgccatgcgctggaggaaa
gctctgcagggaagtaaagaaagtcagggagccttcagcggatggacggtcatgctaaac
atcgaccagagcagagagtccggcttcaggcggttactgcagtccggcggagccatggtc
cttcccggtccgtctccttccctgtaccgagaggcgactcacctgttcgcagatttcagc
cggctaaagccggaagacttcaaagtggacgtagcggaggccaggtcgctcggggtcaag
tgtctgaagccagagtacatcgcagattatctcatgcaggtgccgaccccccctgtggag
ctgtacttcctgcctgcagctgaagacgctcccgacacgccgtcacgtaaacgcaaagca
gaaccaaacgcttccaggctgaaaaagagccgcctgaactga
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integrated database retrieval system
