Oryzias melastigma (Indian medaka): 112151307 Help Entry 112151307         CDS       T07439                                  Symbol col11a1a Name (RefSeq) collagen, type XI, alpha 1a   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism oml  Oryzias melastigma (Indian medaka) Pathway oml04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:oml00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     112151307 (col11a1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oml00536]     112151307 (col11a1a) Glycosaminoglycan binding proteins [BR:oml00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    112151307 (col11a1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  112151307 NCBI-ProteinID:  XP_036073274 LinkDB All DBs Position LG20:15864934..15966932 Genome browser AA seq 1807 aa AA seqDB search MEMQRWSTRWKTKRWFMDSTVSAFFTLTLLLQAAVRAAEPVDVLKVLEFQNYPEGVTRTS GFCENRRASKPDSAYRVAKNIEISAHTSQVFPGGVFPEDFSILTTLRPKSGLQSFLLSIY NEQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRAVNLADGKWHRVAISVEKKTVTII VDCKTTITKPLPRSDHASISTRGVTVFGTRLLDDEVFQGDIQQLLIVDDPKAAYDYCERY SPECDTPQTETLQAQEPLGEYTTDDLDYTQFYDYSEGTTDISPTYEYSEPQLNKLDGDYN TDIDYGTVDESETQSPFGTSDPNEAVEGGFVGVYATEASPAAPERHTIPETLDNLDTGAE PYDFKEYDVKEFDLGRTDGKLYDYEMYDEYGVDPSKPTETYDNGVGLGVAAETGDTESTL AAAFGEKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGTPGDPGDRGPPGRAG LPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLTG RSGPVGPPGPSGLKGEGGDPGPQGPRGIQGPPGQAGKSGKRGRPGADGARGMPGEPGGKG DRGFDGLPGLPGEKGHRGEPGPMGPQGAPGEDGQRGEDGEIGPRGLAGETGPRGLLGPRG PPGPPGGPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGXQGPQG RSGLPGLPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGVRGLKGSKG EKGEDGFPGFKGDMGIKGDRGEIGLLGSRGEDGPEGPKGRAGPTGEPGPLGPAGEKGKLG VPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGIAGKQGPRGQRGPTGPRGARGARGPTG KPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQG KTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSPG KDGPPGLRGFPGERGLPGATGPAGLKGAEGPQGPPGPVGSPGERGSAGPAGVVGLSGRPG PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKG SKGDKGEQGPPGPAGVQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQG EAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPG PPGEPGVAGTDGEAGEKGEDGESGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKG AKGEAGSEGPAGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGSPGQDGPPGPVGPPG LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDPGISGTSGPLG PPGPPGLPGPQGPKGAKGSSGPAGPKGDTGIIGPPGPPGPPGEVIEPLPIRSPKKTKRSA DMPSDMAGTIMDYGEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFTD GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDNKSNGVRISSWPKELPGSWFSEFKRGK ILNYVDAEGSSINMVQMTFLRLLTASARQNFTYHCHQSVAWHDASSDSHDKALRFLGAND EEMSFDNNPYITAITDGCETRKGYGKTVLELNTPKIDQVPIVDVMFNDFGDPNQKFGFDV GPVCFLG NT seq 5424 nt NT seq  +upstreamnt  +downstreamnt atggagatgcaaaggtggtccacgaggtggaaaacgaaaagatggtttatggattccact gtaagcgcgttcttcactttaactctgctgctgcaagctgctgtcagagcagcagagcca gtggatgtcttaaaagtattagagtttcaaaattaccctgaaggagtgactagaacatca ggattttgtgagaaccgaagagcatcaaagcctgactcagcttacagagttgccaagaac atcgagatcagtgcccacacctcgcaggtattccctggtggtgttttccctgaagatttc tccatcctgactacgttgcgcccaaaatctggtctccagtcgttcttgctgtccatttac aacgagcagggagtccagcagcttggagtggaagtggggcgctcacctgttttcttgtat gaagatcagactggcaaaccagcccccgaggactaccccctgttccgtgctgtcaatctt gctgatggaaaatggcaccgtgtggcgatcagcgtggaaaagaagacggttaccatcatt gtggattgtaaaacgacgatcaccaagcctctccccaggagtgaccatgcctccatcagc accaggggcgtcaccgtgttcggcaccaggcttctggatgacgaggttttccaaggtgac attcagcagcttttgattgttgatgatccgaaagcagcatatgactactgtgaacgatac agcccagaatgtgacactccgcagacggaaactctacaggcacaggagccacttggagag tacactactgacgacttagattacactcagttctatgattactctgaaggcacaacagac atcagcccaacgtatgaatattctgagccacagctaaacaagttagatggcgattacaat acagacattgactacggaactgtagatgagtctgaaactcagtcaccctttggcacgagt gaccccaatgaggctgtggaagggggttttgttggtgtgtacgccaccgaggcctctcct gctgctccagaacgccacactatcccagaaacactggacaacttggacactggtgcagaa ccatatgactttaaagaatatgacgtgaaagagtttgatctgggcaggactgatggcaaa ttgtatgattatgagatgtatgatgagtacggagttgacccgtctaaacccacggagacc tacgataatggggtagggcttggggtcgctgccgaaactggcgataccgagagcaccctt gctgcagccttcggagagaagggtgagaagggcgagccagctgttattgaacccggtatg ctgatcgaaggaccaccaggaccgccaggcccagctggtctcccaggaccatcaggcctt caaggacccccgggtactcctggagatccaggtgacagaggtccacctggtcgggctggt ctgcctggtgccgatggcttaccaggacccccgggtaccatgttgatgctgccgttccgt ttcggcggggacggcgaaaaaggtccagtggtgtcggcacaggaagcccaggcgcaggcc atcctgtcccaggccagactggcgatgagaggccccccagggccgatgggtttgactgga aggtccggaccagtgggtccaccgggtccttcgggactgaaaggtgaaggcggagacccc ggtcctcaaggccctcgtgggattcaagggcctcctggacaagctggcaaatctggcaaa cggggtcgtcctggtgctgatggcgctcggggaatgcccggagagccaggtggaaagggg gatcgtggctttgacggacttccagggctgcctggtgaaaagggacacagaggggagccg gggccgatgggaccgcagggggcccccggagaagatgggcagagaggcgaggacggcgag attgggcccagaggattagctggagagactggccctcgaggtttgctgggaccccgaggc cccccgggaccccctggaggtccgggcgttgctggagttgacggaccgccaggtcccaaa ggaaatatgggaccacagggggagccgggcccacccgggcagcagggaattccaggaacg cagggtcttcctggtccccaaggtcctataggaccacctggantgcaggggccgcagggc aggtcagggttacccggattacctggagctgatgggcctcctggtcaccctggtaaggaa ggtccacctggagagaaagggggtcagggtccacccggtccacagggtccaattggatat cccggacctcgtggtgtcaagggtgctgatggcgtccgtggtctcaagggatccaaggga gagaagggtgaagatggcttcccaggttttaagggggacatgggaatcaaaggtgaccgg ggtgagattggcctccttgggtcccgtggagaggatggtcccgagggtcctaagggaaga gctggccccacaggagaacctggacccctgggtcctgctggagaaaagggcaagcttggt gttccagggttgccaggttatccaggtcggcaaggaccaaaaggctcaacgggattccct ggattcccaggagccaacggagagaagggggcaaggggcattgctggcaaacagggtcca agaggacaaagaggtccaacaggtcctcgtggcgctcgcggagctagaggcccaacagga aagccgggtcccaagggcacagcagggaatgacggtcctccaggcccgcctggagaaaga ggacctcaaggaccacagggacccgtgggtttccccggaccaaaaggcccccctggacct cctggaaaagacgggctgcctggacaccccggccagcgtggagaaacgggattccaaggg aaaactggtccaccaggtccaggaggtgttgttgggccacagggacccacaggtgaaact ggtcctgtaggagagcgaggacatcctggaccccctggcccacccggagagcaaggtctt ccaggtgctgctggcaaagagggagccaagggagatcctggaccacaagggtcccccggt aaagacggtccccctgggctccgaggctttcctggagagagaggtctacctggcgccacg ggccccgcaggtctgaagggagcggagggcccccagggtccacctggtcctgtggggtct cctggtgagaggggttccgctgggccagccggtgtagttggactctctggtagacctggt ccacaaggtccccctggtcctgctggagagaaaggtgcacctggagaaaaaggtcctcaa ggtccggctggtcgtgatggagttcagggtcctgttggtctgcctggacctgctggaccc caggggccacctggtgaggacggtgacaagggagaggttggggagcctggtcagaaagga agcaagggtgacaagggagagcagggtcctcctggtcctgctggtgtccaaggacccgtg ggtgccccaggtcctgctggagccgatggagagccaggtcccagaggtcagcagggtatg tttgggcagaagggagatgaaggcgctagaggattccctgggccacctggacccattgga ctgcagggtctaccgggacctccaggtgaaaagggggagaacggcgatgtcgggcccatg ggtccgcctggtcctcctgggcccagaggtcctcagggtccaagtggagctgatggccct caaggtccccccggtggtgtgggcccgatgggatccgtgggcgagaagggtgagcaaggt gaggccggaaatcccggaccacccggagaggcaggaactggggggcctaaaggtgagagg ggggaaaaaggagaagccggcccgcccggagcagctggacctgccggtcccaaaggaccc cctggagatgacggtccaaagggcaaccctggccctgttggattccctggagacccaggc ccacccggagagccaggtgttgctggaactgatggagaagcaggagagaagggagaagat ggtgaatcgggtcaaccgggacccccaggcccatctggagaagccggtccacctggtcca cctggcaaaagaggacccccgggggccgccggtgcagagggcaggcaaggggagaagggc gcaaagggtgaagccggttcagagggcccagctggtaaaacaggaccggttggaccccag ggaccagcaggaaagcccggtccagagggtctacgtggaatccctggccctgttggtgaa caaggactgcccggctctccgggacaggatggtccaccaggtccagtgggtcctcctggt cttcctgggcttaaaggtgaccctgggtcgaaaggtgaaaagggtcacccaggtttaatc ggtttgatcggacctcctggagagcagggagagaaaggagaccgaggtctgcctggaccc caggggtctcctggtggaaagggcgaccctggcatcagtggcacctctggccccctcgga cccccaggcccccccggtctacctggtcctcaaggtccaaagggagctaaaggttcaagt ggccccgctggtccaaagggagacactggtataataggtcctcctggcccccctggccca ccaggtgaggtcatcgagcccctccccattcggtcaccgaagaagaccaaacgctcggct gacatgccgtcggacatggccggcaccatcatggattatggcgaaggcatggaggacatc tttggctcactcaacaacctcaaacaggacattgagcgcatgaaataccccatgggtacg cagaataacccagccaggacgtgcaaagacctccagctctgccacccagagttcaccgat ggcgaatactggattgatcccaaccagggctgctctggagattccttcaaagtttactgt aacttcacagccggaggtgaaacctgcatctatccagataacaagtccaatggagtcagg atatcctcgtggcccaaagaactcccaggttcatggttcagtgaatttaagcgtggtaaa atacttaactatgtcgacgcagaaggaagctcaataaacatggtacagatgaccttcctc agactactgacggcatcagccaggcaaaacttcacctaccactgtcaccagtccgtggcg tggcacgacgcctccagtgacagccatgacaaggcgctacggtttttgggcgccaacgat gaggagatgtctttcgacaacaatccctatataacagccatcacagatggatgtgagaca aggaaaggttacggaaagactgtgttggagctgaacactcccaaaatcgatcaggttcca atcgtcgatgtcatgttcaatgactttggggaccctaaccagaagtttggattcgacgtc ggacccgtctgcttcctcggctaa

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