Oryzias melastigma (Indian medaka): 112151321
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Entry
112151321 CDS
T07439
Name
(RefSeq) cadherin-20
KO
K06807
cadherin 20, type 2
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112151321
Cell adhesion molecules [BR:
oml04515
]
Cadherins
Major cadherins
112151321
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
112151321
NCBI-ProteinID:
XP_024135943
Ensembl:
ENSOMEG00000001068
LinkDB
All DBs
Position
LG20:2267256..2320121
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AA seq
792 aa
AA seq
DB search
MRTRLHLRPAVTRWVPLTLLMVLPHSFVAEPAEGNPGGSALLQRVKRGWVWNQFFVLEEY
TGLEPLYIGKLHSDMDKGDGSIRYILTGEGAGTTFTIDDSTGDIHAIQRLDREVKSQYVL
RAQARNRLTDMPLEPESEFIVKIQDINDNEPKFLDGPYQATVPEMSKVGTPVIQLTATDA
DDPTYGNSARVVYSILEGQPYFSVDAKTGMVRVSLADMDRETRENYTVVIQAKDMGGQLG
GLAGTTTVNITLSDVNDNSPVFDQRLYQMSVLESAPVGSVVGRIWAKDRDVGVNAEMKYR
VIDGDGRDTFDISTDPSNRFGIIMVKKLLDFEKKPSYTLKVEGVNTHPGPTFHNPGPFKD
VTIVHVSVEDVDEPPLFDSEAYFMELPEDAEIGTVVKTVSARDPDAANNTVRYSIEKTSD
PDKFFYIELTSGSLMTVRSLDREEISWHNITVLAMEMNNPSQISSVSVAVKVLDVNDNPP
SLTHYLETYVCENAKAGQLVETVTAVDPDEPPAGQHFHYSLAPEAANNPNFTLRDNQDNT
AWILTRRGSWSQKDQTIFFLPIFVSDDEQPVQTSTGTLTVRVCSCDHEGNAMSCNPEAYS
LPASLSRGALIAILACIFVLLVMILLMLSLRRQWKKPYLCDEEENVHENIVRYDDEGGGE
EDTEAFDIAAMWNPREVHPRGKTRQDMLPEIESLSRYVPQACVVGGGGDGNVQGYVLAKL
LEADGDACAPPYDSLQTYAYEGDGSIAESLSSLQSGNSNADHEYDYLNDWGPRFRKLAEM
YGVVEPHSPPVW
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgagaacccgtttgcacctccggccggctgtgacccggtgggtccctctgacccttctg
atggtgctgcctcacagcttcgtcgctgaaccagcagaggggaaccctggaggctccgcc
ctgctgcagagggtgaagcgaggctgggtctggaaccagttcttcgtcctggaggagtac
accggactggagccgctgtacatcgggaagctgcactcggacatggacaaaggcgacgga
tccatcaggtacatcctgacgggtgagggcgccggcaccaccttcaccatcgatgacagc
accggagacatccacgccatccagagactggaccgggaggtgaaatcgcagtacgtcctc
cgggcccaggcccgcaaccgcctgacggacatgcctctagaacccgagtccgagttcatc
gtcaagatccaggacatcaacgacaacgagcccaagttcctggatgggccgtaccaggca
acggtaccggagatgtccaaagtcggaacgccagtgatccagctgactgccacagatgca
gacgaccccacgtacggcaacagcgctcgtgtggtctacagcatcctggagggacagccg
tacttctcagtggacgccaaaaccggaatggtccgggtgtctctggcagacatggatcga
gagaccagagagaactacaccgtggtcatccaggccaaagacatgggcggacagctgggg
gggcttgcgggcacaaccaccgtcaacatcacactcagcgacgtcaacgacaactccccc
gtgtttgaccagaggctgtatcagatgagcgttttggagtcagcccctgtggggtcggtg
gtgggtcggatctgggccaaggaccgggacgtgggggtcaacgcagagatgaagtacagg
gtcattgatggggacgggagggacacgtttgacatcagcaccgacccctccaatcgcttt
ggtatcatcatggtgaagaagctgctggactttgagaagaagcccagctacaccctgaag
gtggagggagtcaacacccatccgggcccgaccttccacaaccccgggcccttcaaggat
gtcaccatcgtgcacgtgagtgtggaggacgtggacgagcccccgcttttcgactcagag
gcgtacttcatggagctgccggaggacgcggagatcgggacggtggtgaagacggtgtca
gcgcgggacccggacgctgccaacaacactgtgaggtactccatcgagaagaccagcgat
cccgacaaattcttctacattgagctgacgtctgggtccctgatgacggtgcgttcgctg
gaccgagaggaaatcagctggcacaacatcactgtcctcgccatggagatgaataacccc
tcccagatttccagcgtctccgtggctgtgaaggtcctggacgtcaacgacaaccctcca
tccctaacgcactatctagagacgtatgtgtgtgaaaacgctaaagcaggacagctggtg
gagacggtgacggcggtggatccagacgagcccccagccggacaacacttccactacagc
ttagctccagaagccgccaacaaccccaacttcaccctgagggacaaccaagacaacacg
gcgtggatcctgacgcgccgcggcagctggtcgcagaaggaccagaccatcttcttcctg
cccatcttcgtctctgacgatgagcagccggtgcagaccagcaccgggacgctgacggtg
cgcgtgtgcagctgcgaccacgagggcaacgccatgtcgtgcaacccggaggcctacagc
ctgcccgccagcctcagcaggggggcgctcatcgccatcctggcctgcatcttcgtcctg
ctggtgatgattctactcatgctctccctgcggaggcaatggaagaagccgtacctgtgc
gacgaggaggagaacgtccacgagaacatcgttcgctatgacgacgaaggcggcggcgag
gaggacacagaggccttcgacatcgccgccatgtggaacccgcgcgaggtgcacccccga
gggaagaccaggcaggacatgctgccggaaatcgagagcttgtctcgctacgtgcctcaa
gcgtgcgtggttggcggcggcggcgacgggaacgttcaggggtacgtgctggcgaagctg
ctggaggccgacggggacgcctgcgcccccccgtacgactcgctgcagacctacgcctac
gagggcgacggctccatcgcagagtcgctcagctcgctccagtcggggaactccaacgcc
gaccacgagtacgactacctgaacgactgggggccccgcttcagaaaactggcagagatg
tacggcgtggtggagccccacagcccccccgtgtggtag
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