Oryzias melastigma (Indian medaka): 112151344
Help
Entry
112151344 CDS
T07439
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112151344 (trpc1)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112151344 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
112151344
NCBI-ProteinID:
XP_024135978
Ensembl:
ENSOMEG00000005043
UniProt:
A0A3B3D4N4
LinkDB
All DBs
Position
LG20:complement(7902494..7920499)
Genome browser
AA seq
803 aa
AA seq
DB search
MHVGVCPYSLSVVMAALYQGTDTSSPDKFMALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENRHGELNINCIDVLGRDAVTIAIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSA
DLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDHVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKIATVLSVALLWP
LLSVCYLVVPRSRVGQIIHTPFVKFIIHSASYFTFLLLLNLYSLVYNEGKKNTMGPALEM
IDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNQLSFVMNSLYLATFTLKVVAHSKACS
HFPQCKDVPEMERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQM
LQDFGKFLGLFLLVLFSFTIGLTQLYGKDLKSSGKKTTKDCEGIFCQQQSNDAFHTFMGT
CYALFWYIFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFR
QIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLVTSLRKWICSHTTKGK
MKRQNSLKEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSK
FRNEMRDLLGFRTSKYAMFYPRS
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcggtgtttgtccgtactcgctctccgtcgtgatggcagctctttaccagggc
accgacacctcctccccggacaaattcatggccttgaaggacgtgagagaagtgaaggag
gagacgacgctggacgagaagctcttcctgctggcatgcgagaaaggtgactactacatg
gtgaagaagctgctggaggagaatcgacacggcgagctcaacatcaactgcatcgacgtg
ctgggcagagacgccgtcaccatcgccatcgagaatgagaatctggacatcctgcagctt
ctgcttgagcacggctgccaggcgacagatgccttgttggtggccatagactcggaggtg
gtgggagctgtggacatcctcctcaaccacagacccagacgatcctccaagccctccatt
gctaaactcatgcagcgcatccagaatcccgagtattcaaccacgatggacgtggctccg
gtcatcctggcagcgcacaggaacaattacgagatcttgaccatgctgttgaaacaggac
atctccctccccaggcctcacgccgtgggctgcgagtgcacgttgtgcaacgctaaaaac
aagaaggacagcttacgtcactccaggttccgccttgacatctaccgctgcctggcgagc
ccggcgctcatcatgctgactgaggaggatcccatcctgagagcgtttgagctgagtgca
gacctgagggagctcagccttgtcgaggtggagtttaggaacgactacgaggaactggca
aagcagtgtaagatgtttgccaaagacctcctggctcaggcgcgaaactccagagagctg
gaagtgatcctcaaccacacatccagcgaggatcacgtcgacaagagaggcttgctggag
gagcggatgaacttgagtcggcttaagctcgccatcaagtacaaccagaaagagtttgtg
gctcaatccaactgtcaacagttcctcaacaccgtttggttcggtgagacggcgagctac
cggcgcaagcacacctgtctgaagatagccaccgtcttgagcgtggccctactttggccg
ctgctgtccgtctgctaccttgtggtgccccgctcccgcgtcggccagatcatccacacc
ccatttgtgaaattcatcatccacagcgcttcctacttcaccttcctgctgctgctcaac
ctgtactctctggtctacaacgagggcaagaagaacacgatgggtcctgctcttgagatg
attgattaccttctcatcctctggatcatagggatggtgtggtcggacgtgaagcgcttg
tggtacgaaggcctggaagactttctggaggaatccaggaaccagttgagctttgtgatg
aactctctctacttagccaccttcaccctcaaggttgttgctcacagcaaggcttgttct
catttccctcagtgcaaagatgtaccagagatggaaagaaagaactgggacgccttccat
cccatcctggtggccgagggtctcttcgcctttgcaaacgtcctgagttacctgcgtctt
ttcttcatgtacaccaccagctccatcttgggtcctctgcagatctccatgggtcagatg
ctgcaggattttggaaagtttctgggccttttcctgctggtcttgttctccttcaccatt
ggactcactcagctgtacggcaaagatctcaaaagctcgggaaagaaaacaaccaaggac
tgcgaaggcatcttctgccagcaacagagcaacgatgcattccacacgtttatggggacc
tgctacgccctgttctggtacatcttctccctggcccacgtcgccctcttcgtcacccga
atcagctacacagaggagctgaggtcttttgttggcgccttgatcatcggcacctacaac
atcgtggtggttattgttctcaccaagctgctggtggccatgctccataagagcttcaga
caaattgctaatcacgaggacaaagagtggaagtttgctcgggcgaaactctggctgagc
tactttgatgacaagtgtactctgcctccacctttcaacatcctcccttcaccaaagacc
gtctgctacctggtgaccagtttgaggaagtggatctgctcccacaccacaaagggcaaa
atgaagagacagaacagcctcaaagagtggaagaacctgaagcaaaagcgggacgagaac
taccagaagatcatgtgctgcctggttcaccgatacctgacctccaccaggcagaagatg
cagagcacagaccaggccacggtggagaacctgaacgacctgcgccaagacctgtccaag
ttccgcaacgagatgagagacctgctgggcttccgtacctccaagtatgccatgttctac
ccgaggagctaa
DBGET
integrated database retrieval system
