Oryzias melastigma (Indian medaka): 112151387
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Entry
112151387 CDS
T07439
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oml04040
]
112151387 (trpa1b)
Ion channels [BR:
oml04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112151387 (trpa1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
112151387
NCBI-ProteinID:
XP_024136075
Ensembl:
ENSOMEG00000010171
LinkDB
All DBs
Position
LG20:complement(10615318..10632823)
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AA seq
1118 aa
AA seq
DB search
MNFSRDVARQTSCYTYVIEDEDTSPASLNAVELAEKGDLAHLENLVRKSPEVLNEKDDCG
ASPLHHAAAGGHVTLIQFIVTVVDPQELNCSDDQGNVPLHWAVERNKPESCRTLLDLGAD
PNVLNTALLSPLHLAVSLRYNDLVELLLSYNATDCNLQGDLGNTPLMMACSLNNCEALTI
LLKHGAKLCQQNKLGHFSMHAAAFAGAKKAMEVILKAGEEHGHPAAIHINYLDKSNSSPL
HLAVRGGNIEAIRLCIATGAKIDQQQNDRSTPLHLACTQGATEVVKLMLSTVDQVEDIIN
LTDGACQTPLHRATIFDHNELAEYLISLGADLNSSDCKGNTPLLLATSCGAWKCVTLLLS
KGANVNLKDKCGCNFLHLAILQPKGLKNIPEDVLQRNTVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLACKSKDKKSALHFAAQYGRINTCQRLLETITDSRLLNEGDER
GLTPLHLASKGGHTKVVQLLLRKGALFHSDYKGWSCLHHAASEGYTQTMAILLSANLKLL
DKTDEDGNTALHIAARAGHVAAVRLMLVKGAELILNKNHTSFLHEAVQNGRKDVVNAVVD
SERCDEALQLFTPGTSQRCPILDMIEFLPETCKHLLDRCVRESDDDHNSPNYHIEYSFRW
LQAPISPQKLSDESLKIQPLAAVNAMVKYNRIELLNHPVCKKYLAMKWVAYGSKAHALNM
FLYLLGLLPLTHLIVTLRPSMNTTDTGDRSINMVPVSFTEQSVFKSFCMVMVLIMNVYSI
GKEVIQLSQQRWNYFRDHSNQNDWASAIYSLLFIIPLMINAEGSLHWQAGALAVLHYWIG
FLLYLQRFENVGIFVVMFGEIMKTLARIVMLFFFLMLAFSLAFHALMLNQRQFDTVPLSV
IQTFVMMVGELNYQNNILDAFLNNELPFGILTYVIFVQFVMLMPILLVNLMIGLAVGDIA
EVQRNASLKRIAMQIDLHTSLEDKLPYWFMKRVDKPSIILYPNRKCSKHFLTQLISGEEE
KNEVWSRLQSKSQNCTVIENELKKQKIRMKEMSSILEKQHCLLKLIIQKMEITSEADEYD
GPVNIRGTMWPNLTKTKTRGRTTSRWVPLMKAIEAKRK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggatgtggctcgacagaccagctgttacacatatgtgatcgaggat
gaggacacgtcgccggcgagcctaaatgcagtcgagttagcagagaagggtgacctggct
cacctggagaacctggtgaggaaaagcccagaggttttgaacgagaaagatgactgtgga
gccagtcccctgcatcatgccgctgcaggcggccacgtcaccctgatccagttcatcgtc
actgtggtggacccacaggagctgaactgcagtgatgaccaggggaacgtacccctgcac
tgggcagtggagaggaacaaaccagagagctgcagaactcttttggacctgggcgctgac
cccaacgtcctcaacaccgctctgttgtcgccgctacacttggctgttagcctcagatac
aacgaccttgtggagctgcttttgtcctacaacgccaccgactgcaacctacagggagac
cttggaaacacccccctgatgatggcctgctccctcaataactgtgaggctctcactatt
ttgctcaaacatggagccaagctctgccagcagaacaagctcggccatttctccatgcat
gctgctgcctttgcaggcgcaaagaaagccatggaagtcattttgaaggctggagaggag
catggccaccctgcagcaatacacatcaactacttggacaagtccaatagcagccctctc
catctggctgtacgtggggggaatattgaggccatccgtctctgcattgctaccggggcc
aaaatcgaccagcaacagaatgatcgatccacgccacttcatttggcctgcacacaaggt
gccactgaggtggtcaaattgatgctgagcactgtggaccaggtagaagatatcatcaac
ctcactgacggggcgtgtcaaacccctctgcacagggctacaatatttgaccacaatgag
ctggcggagtacctcatttctttgggtgcagatctcaacagcagtgactgtaaaggcaac
actcccctgctgttggcaaccagctgtggagcctggaaatgtgtaactctgcttttgtca
aaaggggcaaatgtcaatttgaaagacaaatgtggttgtaacttccttcacctggccatt
ctgcagccaaaagggctgaaaaacatcccagaagacgtactgcagcgcaacactgtgaag
gccttgctgagctgtgaggataatgagggctgcaccccactccattacgcctgcagactg
gggatccatgactcggtgaagaacatgctgggcctctcagggcaggtcggccttgcatgc
aagtccaaggacaagaagtctgctctgcactttgccgcccagtacgggcgcatcaacacc
tgtcagagattattggagaccatcactgactcccgcttgctaaatgaaggagacgagcgg
ggcctgacacctctgcatttagcttccaaagggggccacactaaagtggttcagctgctg
ctgcgcaagggagctctctttcacagtgattacaaaggctggtcttgtctgcatcatgct
gcttctgagggatacactcaaactatggccattctgctgtcagccaacctcaaattactg
gataaaacagatgaggatgggaacacagcgctgcatattgcagcaagagcgggacacgtg
gcggcagtcaggctgatgctggtcaaaggggcggagctcatcttgaacaagaaccacaca
tcattcctccatgaagcagtgcagaacggaagaaaggatgtggtcaatgctgtggttgat
agtgaaagatgtgacgaagcgttgcagctgttcactcccggcaccagccagagatgcccc
atactcgatatgattgagtttctgcctgaaacctgcaagcatctactggaccgctgtgtg
agagagtctgatgatgaccacaacagccctaactaccatattgaatatagtttccgatgg
ctccaggctcccatttcaccccaaaagttgagcgatgagtccttgaagattcagccactg
gctgcagtcaatgcaatggtgaagtacaatcgcatagagctccttaaccacccagtctgc
aaaaaatatctggcaatgaagtgggttgcatatggtagcaaagctcatgctctcaacatg
tttttgtacctgttgggattgctgcccttgacccacttaatcgtgactctccggccctct
atgaacaccactgacacaggtgaccgttccatcaacatggtgcctgtgtcttttactgag
caatctgtgttcaagtccttctgtatggtgatggtcctgatcatgaacgtttactctata
ggaaaagaagtcatacagttatcacagcagcgctggaattactttagggatcactccaac
caaaacgactgggcttcagccatctactctctactgttcatcatccctctgatgatcaat
gcagagggctcgctgcactggcaggcaggagcactggctgtcttgcattactggattggt
tttcttctttatctccagaggtttgaaaatgtcggcatctttgtggtgatgttcggggag
atcatgaagacactggcccgcattgtgatgctgtttttcttcctgatgttggccttcagt
ttggcgttccatgctctaatgctcaaccagaggcagttcgacacggtgccgctctccgtg
atccaaacctttgtgatgatggtcggggaactgaactaccagaataacatcctggatgcc
tttctgaacaatgagctgcccttcggcatcctgacatatgtcatctttgtgcaatttgtg
atgctcatgcctatcctgctggtgaacttgatgatcggtttggcagttggagatattgct
gaggttcaaagaaatgcctctttaaaacggatagccatgcagattgaccttcacacctct
ctggaagataagctcccgtactggttcatgaaacgtgttgacaaaccctcaatcatcctc
tatcccaatcgtaaatgttccaagcacttccttacacagctgatctccggtgaagaggag
aaaaatgaggtctggagtcgtctgcagtccaagtcacagaactgcactgtcatagagaat
gaactgaagaagcagaagatcaggatgaaagagatgtcgagcattctggagaagcagcac
tgcctcctgaagctcatcatccagaagatggagatcacctcggaggcggacgagtacgac
ggcccggtgaacatcaggggcaccatgtggcccaacctgactaagactaaaacacgaggc
cgcaccacgtcccggtgggtccccctgatgaaagccatcgaggcgaagcgtaaatga
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integrated database retrieval system
