Oryzias melastigma (Indian medaka): 112151407
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Entry
112151407 CDS
T07439
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04144
Endocytosis
oml04517
IgSF CAM signaling
oml04520
Adherens junction
oml04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
112151407
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112151407
09144 Cellular community - eukaryotes
04520 Adherens junction
112151407
04530 Tight junction
112151407
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oml01009
]
112151407
Protein phosphatases and associated proteins [BR:
oml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112151407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
112151407
NCBI-ProteinID:
XP_024136111
Ensembl:
ENSOMEG00000020201
LinkDB
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Position
LG20:17613363..18051644
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AA seq
1371 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGDGVIKVQGLVEKATMRYRKAIAKDSSYWVQVHRLEHGDGGILD
PDDMLCDVVDDKDRLVAVYEEQDPHNGGDGTSASSTGTHSPEPFPSDTSSTSAFQPYQAD
SEIEVTQSALQSSMALNVRRSSDPSSPGLPPGEVLDIQEEPSRKNPSRWSTTAGFQKLNH
KPSASSGSSSLEPKERLAHAYRSLPRDASGWTTQFQREMTRSSLSANHPMVDRWFDRQDQ
EDEAEEQSTQERRIERTEPVGRADSSLDHSPFLSFESMLKPVEVSNNGGPLGIHVVPFSS
QDVRTQGLLVRRLEPGGKTEQERLFQENDCIVKINQGDIRNLRFEQAQNIFRQAMRSTVI
LFHVVPAALKRQYEILSATKEIASPQLNRVRFSQDSQHPGYRSSLVGGSSVRSGSQSSMN
HNHQGPLSGSTPEMSRRFATLPPSLISKTPPSSSPSLQRRISTNIPTTSYLKKRGRRFNV
QLKKGEEGLGFSITSRDVPIGGTVPIYIKNILPRGAAIQDGRLKAGDRLLEVSGEDLSGK
SQEEVVALLRAAPMEGIVNLLVVRDEDSLLPREVEEDDTALTRNGTQEFMTFEIPLSDSG
SAGLGVSVKGNRSKDTQADLGIFVKSIINGGAASKDGRLHVNDQLIAVNGESLLDMTNQE
AMEALRKSMSVEGNKRGMIQLIVARRMARDIEEPPLSPIPQELPVNSLLDSQERRISHST
FETFDGSDTISPPRANVITRMGHYQLSPTVNMPQEDMVIIEDDRPPMLPARLSDHSSSSS
HEDMGFVGENPSGWMQEMPVQEECSLSPDAEADLSFQREGFGRQSMSEKRTKQYDNPARL
EIMKSRKTKSMDLGSEERGALSSLDQKKPGSLESLEAAVAKVSVNNKIGVHRLHSHMTRG
RGCNESFRAAIDKSYEKSGSKKGSSIETLDDDTEGSSRSGRESMSASGELIAVDSASGRS
DEREKDPPKESQKEKKLERDKNKSKKGVLKGLGDMFRFGKQRKGEDQIERRSSSKSKTGE
ASEEETLQMKIERERIQAKTEEFREKQVKDREYAEIQDVISRTFSSDEEHTYAGIGSLGS
SMDGSSSDAYSHPYHLPQNPQGPPPPPPPPPATLNLDSNGPPLEALYAQVNKARNGHPPA
PESTQMTPSNHDRIQRLRHEFQQAKQEEDLDGHKRSYSFNQPWVSNGTESQSGRHSATVE
TQAQKQQQNEADSFQQAQRHYNSLPRQPRKNHSTASQDSWMYTPAEGYPPSKENPRYPGA
PPPRNGYLGMSSFNTRVLLETQELLRQEERRKEQQEAMKEQLSLSSEASSGNSSGAAFSL
SRENTVIPGSTPMRVGSQPKGPYRQDVPPSPSQITKFSFRHGSEKGRMFYS
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgcttcggcaggacgcgggtggtcgttccgtgcggggatggcgtc
atcaaggtccagggtctggtcgagaaagcgaccatgcgctacaggaaagccatcgcaaag
gactctagttactgggttcaggtgcaccgactggagcatggagatggagggattttggac
cccgatgacatgctgtgtgacgtggtggatgacaaagacaggctggttgcagtttacgaa
gaacaggatccacacaatggaggtgatggaaccagtgccagttccacaggaactcacagt
ccagaaccatttcccagcgacacaagttctacttcagccttccagccttaccaggccgac
agtgagatcgaagtcacgcagtctgctctgcagtctagcatggccctcaacgtccgccgc
agtagcgacccctcctcgcctggccttcctccaggtgaggtcctggacattcaagaagaa
ccgtccagaaagaacccatctcgctggtccacaacagctgggtttcaaaagttgaaccat
aagccaagtgcaagttctggctcaagcagcctggagccaaaggaaagattggcgcatgcg
tacaggagtcttcctcgcgatgcaagtggctggaccactcagtttcagagggaaatgacc
cgatcttccctcagcgccaaccacccaatggtggatcgatggtttgaccgccaggaccag
gaagacgaggcagaggagcaaagcacgcaggagcgacggattgagcggaccgagcccgtc
gggagggcagactcctccctggatcattcacctttcctaagttttgaaagcatgctcaag
ccggtcgaagtgtccaacaatgggggccccctggggatccacgtggtccccttcagttca
caggatgtcaggactcagggtctgcttgtgaggcgtctggagcccggagggaaaactgag
caggagcgtctcttccaggagaacgactgcatcgtcaagataaaccagggggacatccgg
aacctccgttttgaacaagcccagaacattttcaggcaggccatgcgctccaccgtcatc
ctcttccacgtggtccccgcagccctcaagaggcagtacgagatcctgtcggccaccaag
gagatcgcctccccccagttaaacagggtccgctttagccaagactcccaacatcccggc
tacaggtcaagtctggttggagggtcgtcagtcagatctggatcgcagtccagcatgaac
cacaatcaccagggcccgctttcagggagcactcctgagatgagccgacgctttgccact
ttacccccctctttgatctccaagacacctccttcctcgtcaccctccctgcagcggagg
ataagcacaaacataccgaccacgtcctacctgaagaagagaggtcgcaggttcaacgtc
cagttaaagaaaggagaagaaggtctgggattcagtatcacctctcgggatgtccccatt
ggaggaactgttcccatttacatcaaaaacatccttcctcgaggcgctgccatccaagat
ggccgactgaaagcgggagaccggctgctggaggtgagtggagaggacctgagtgggaag
agccaggaggaggtggtggccttgcttcgagccgctcccatggaagggatcgtgaacttg
ctggtggttcgggacgaggactccctgctgcctcgggaagtggaggaagatgacacggcc
ttgacacgtaacggaacacaagagttcatgacctttgagatccccctaagcgactcaggc
tcagcaggtttgggggtcagcgtaaagggcaaccgctcaaaggacacccaggctgatctg
ggtatctttgtaaaatccataatcaacgggggtgctgctagtaaggacggacgcctacac
gtcaacgaccaactcattgcagtcaacggagaatcattgcttgatatgaccaaccaagag
gccatggaagcactgcgcaaatccatgtccgtagagggcaacaagcgtggcatgattcag
ctcattgtggcccggagaatggccagagatattgaggaacctccactgagccccatacca
caagagcttcctgtcaactccctcctcgacagccaggaacgccggatctcccattccacc
tttgaaaccttcgatggctcggacaccatttccccgccacgagctaacgtcataacacgc
atgggtcactaccagctctctccgactgtgaacatgcctcaggaagacatggtgataatc
gaagacgataggccacccatgcttcctgcccgtctgtcggatcattcgtcctccagttcc
catgaagacatgggctttgtgggagaaaacccaagtggttggatgcaggaaatgcctgtg
caggaggaatgctcactcagtcctgatgcagaggccgacctctcgttccagagggagggc
tttggccgccagagcatgtctgagaagcgcaccaagcagtacgacaatcctgcaaggctg
gagattatgaaaagtcgaaaaaccaaaagcatggatctaggttctgaggaacgtggagct
ttatcttcattggatcagaaaaagccaggttccctcgagagccttgaagcagctgtagcc
aaggtgagcgtcaacaacaagatcggcgtccacaggctgcactcccacatgacacgaggc
cgcggctgcaacgaaagcttccgggcggcgatcgacaaatcctatgagaaatccggctcg
aaaaagggaagcagcattgagacactggacgatgacacagagggaagctcacggtctggc
cgggagtccatgtccgccagcggagagctcattgcggtcgacagcgcaagcggtcgcagc
gatgaaagggaaaaagatccaccaaaagagtcacaaaaggaaaagaagctggaaagggac
aagaacaagtcaaagaagggtgtgctgaagggtctgggtgacatgttcaggtttggaaag
caacgaaagggtgaggaccagatagagaggagaagctccagcaaatctaaaactggagaa
gcttcagaggaagagactcttcagatgaagatagaaagagaaagaatacaggccaaaacc
gaggagttccgggagaagcaggtgaaggacagggagtacgccgagatccaagacgtcatc
agccgcaccttcagctcggacgaggagcacacctacgccggcatcggctcgctgggctcg
tccatggacggcagcagcagcgatgcctacagccacccctaccacctcccacagaacccc
cagggccctccaccgcctccccctcctccccctgcaacgctgaacctcgatagcaacgga
ccaccactggaggcgctctatgcccaggtcaacaaggctcgcaacgggcatcctccagct
cctgaaagcactcagatgactcccagcaaccacgaccggatacaaaggttgagacatgag
tttcagcaggccaagcaggaggaggacctagacggccataagcgctcgtacagctttaac
caaccctgggtgagtaacgggactgaatctcagagcggacgtcattctgcaacggttgag
actcaagcacagaaacagcagcagaacgaggcagactccttccaacaagcacagaggcac
tacaactccctgccgcggcaacctcgcaaaaaccacagcacagcgtctcaggactcatgg
atgtacacgccagcggagggatacccgccttccaaggaaaaccctcgctaccccggggcc
ccgcccccacgcaacggctacctgggcatgtccagcttcaacactcgtgtcctcctggag
acccaggagctgctgcggcaggaggagaggcgcaaagagcagcaggaagccatgaaagag
cagctgtcgctctcgtcagaagcctccagtggtaacagcagtggcgccgccttcagcctc
agcagggaaaacactgtgatacccggctcaacccccatgcgggtcgggtctcagcccaaa
gggccctacaggcaggacgtcccaccctcgccctcgcaaatcaccaagttcagctttcgg
cacggctctgaaaaaggaaggatgttttattcctga
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