Oryzias melastigma (Indian medaka): 112151561
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Entry
112151561 CDS
T07439
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112151561 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Other domain-containing proteins
Patched domain-containing proteins
112151561 (ptchd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
TMV_coat
Motif
Other DBs
NCBI-GeneID:
112151561
NCBI-ProteinID:
XP_024136314
Ensembl:
ENSOMEG00000023853
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All DBs
Position
LG20:257509..266692
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AA seq
971 aa
AA seq
DB search
MLGSAPGLSARWERLEPRPRARMLRQVLHAGLRTSFRALGRFVAGHAVFFASAPVLLSVL
LGASFSRYRVEDDVQSLLAPKHSLAKIEGSLVESLFPVNRSRHALYSDLQTPGRYGRVIV
TARKGSLLEAAHLDAVLALHRNIYQMQVTFPAAGLSSFNYSFSYLCLPDDKNGCIIDDII
RAMEEIQAARASNRTLPVLHYPITQLADGRRAYIGHQLGGVQGWGPGGAVRAQGAGGRGE
GVRSARALQLTYYLQARGELMEQVAGLWEEAFCAELRRFAATHSRLGVYPSTSSSLRTDF
QFSSILAHRPLLASLGICGVLAILCCSMRDCVRSKPWLGLLALLSITLSGLSAAGILNLT
GATYNSTYLGIPFVMLGHGLFGSFEMLSSWRRTREDQHVKERVASVFEDVMLRFSSSTML
HLMTLGLAASPLTNMEAVRLFCRTAALAVTVSYVYMLSFYSSCLVFTGYLETGYRHGCFC
RRVPRPDRLSSKPAWYRCLMFTRYQDESQTANPQLAQSHTLPNSDLTRTRTTISTGVHAH
VGNCSHTHPQPSVTASMDHHLLDSHLLLGCVRRCYGNWITNTYVKPFVVLLYLVYISFGL
MGFLQVTQGSDPSAVVAMDTATVLYTRAQQRYFSSYSPVIGFYIYESAPYWNSSVQRDLL
EYAKGFQRISWLEAYLNYLSDHNQSTSLPRENFTYTLRHSFLRQPQFAHFADDIIFAERG
EGEEPDLAASRIFLVAKTTENKREEMSVLLDTLRRLSLTSRVRFLIFNPSFVYLDRYAAA
VSSPLRHSLLAVLFLLGLSSLAIVEPLVSVWLGLTLLSVQFGVLGFMTLWGVELDCMSVL
CLISALGHSADCSGPLLCGFASGQGESRTRWVRAALERHGVPSLQTLICYGAALVPVGSV
RSNLTQTMFRCLALTACCSALHTLAFLPTLLTFLPPSKNRGLRPAGESQRQGAECVEMNN
STRVVDQITTV
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcagcgcgcccgggctttccgctcggtgggagaggctcgagccgcggccgcgc
gccaggatgctgcgccaggtgttgcacgcgggcctgaggacttcgttccgcgcgctcggc
cggttcgtggcgggccacgcggtgttcttcgcctccgcgcccgtgctgctgtccgtgctg
ctgggggccagcttcagccggtaccgcgtggaggacgacgtgcagagcctgctcgcgccc
aaacacagcctggccaagatcgagggcagcctggtggagagcctgttcccggtcaaccgc
tcccggcacgcgctctactccgacctgcagacgccgggccgctacgggcgcgtgatcgtc
accgcgcggaaggggagcctgctggaagccgctcacctggacgcggttttagcgctgcac
aggaacatctaccagatgcaggtgacgtttcccgccgccggcctcagcagcttcaactac
tccttctcctacctctgcctcccagacgacaagaatggctgcatcatcgatgacatcatc
cgggccatggaggaaatccaggcggcccgggcctccaaccgcaccctgccggtcctgcac
tatcccatcacccagctggcggacggacggcgagcctacatcggccaccagctgggcggc
gtgcagggctggggcccagggggggcggtgcgagctcagggggctggaggcagaggggag
ggtgtgcgctctgccagggcgctgcagctcacctactacctgcaggcccgcggcgagctg
atggagcaggtggccggcctgtgggaggaggccttctgcgccgagctcaggaggttcgca
gccacacactccaggctgggggtttacccctccacctcgtcctctctcaggaccgacttc
cagttctcctccatactcgcccaccgccccctgctggccagcttaggaatctgcggggtg
ctggccatcctctgctgctccatgcgggactgtgtgaggtccaaaccctggttggggctc
ctggctctgctgtccatcactctgtcaggactgtctgctgctggaatcctcaacctgacc
ggggccacctacaactccacgtacctcggaatcccgtttgtcatgctcggtcacgggctc
tttggctctttcgagatgctgtcgtcatggagacggacgcgggaggaccagcacgtgaag
gagcgagtggcaagtgtctttgaggacgtcatgctgcggttctccagctccacaatgctc
cacctgatgaccctgggcctggccgcctcgccgctcaccaacatggaggcggtgcggctc
ttctgccgcacggccgccctggccgtgaccgtcagctacgtctacatgctgtctttctac
agttcctgcctggtgtttacgggatacctggagaccggctaccggcacggctgcttctgc
cggcgcgtccccagaccggaccggctgagctctaagcccgcctggtaccggtgcttgatg
ttcacccggtaccaggatgagagccagaccgctaaccctcagctcgcccagtctcacact
ctaccgaactctgacctgacccggacgcgaacaaccatcagcaccggcgtgcacgcacat
gtggggaactgctcacatacgcacccccagcccagtgtcacggccagcatggaccaccac
ctcctggactcgcatctgctgctgggctgtgtgaggcgttgctatggaaactggatcacc
aacacgtatgtcaaaccttttgtggtcctgctctacctggtctacatctcctttggtctg
atgggtttcctccaggtcacccagggctcggaccccagcgccgtggttgccatggatacg
gccaccgtcctgtacacacgtgcgcagcagcgttacttcagctcgtactcgcctgtgatt
ggcttctacatctacgagagcgccccctactggaactcctctgtgcagcgggaccttctg
gagtacgccaaaggtttccagaggataagctggctggaggcttacctgaactacctgtcc
gaccacaaccagtccaccagcctgccgagggagaacttcacctacacgctgcgccactcc
ttcctccgccagccgcagttcgcacactttgcagacgacatcatctttgcagagcgtggt
gaaggggaggagccagatctggcagcttctcgcatcttcctggtcgctaagacaacagag
aacaagcgcgaggagatgtcggtgctgctggacacgctgcggcgcctgtccttgacctct
cgcgttcgctttctaatctttaacccctcctttgtgtacttggaccgctatgcggcggcg
gtgagctcgccgctcagacactcgctgctggccgtgctcttcctcctgggtctgtcctct
ctggccatcgtggagccgctggtgtccgtgtggctgggcctcaccttgctgtccgtgcag
tttggggtgctggggtttatgaccttatggggcgtggagctggactgcatgtcggttttg
tgtctcatctcggctctggggcactcggcggactgcagcgggccgctgctctgtggtttc
gcctccggtcagggggagagccggactcgctgggtgagagcggcgctggagcgacatggc
gttccgtctctgcagacgctcatctgctatggcgccgcgttggtcccggtgggctctgtg
cgctccaacctcacgcagaccatgttccgctgcctcgccctcacagcctgctgctccgcc
ctgcacactctggccttcctgcccaccctcctcaccttcctgcccccctccaagaaccga
ggcctgcgccctgccggggaaagccagagacagggggcggagtgtgtggagatgaacaac
agcaccagggtggttgatcagatcactaccgtttga
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