Oryzias melastigma (Indian medaka): 112151794
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Entry
112151794 CDS
T07439
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112151794
Transcription factors [BR:
oml03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
112151794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
112151794
NCBI-ProteinID:
XP_024136667
Ensembl:
ENSOMEG00000005794
LinkDB
All DBs
Position
LG22:complement(23775782..24039083)
Genome browser
AA seq
1038 aa
AA seq
DB search
MIRIFPDFSVQVTASAAGAAGVGGGGGGGAGGGMVAGPPVGRVPVPGATNGTPQSLQGIG
AYQQSDPYWERPSNAGSCSSARPKTLHLAGQQHTSSPWLQALRKEKSRDAARSRRGKENF
EFYELAKMLPLPGAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRIEGPPPNTSVKA
IGSQRRRSPSAVASEIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVEL
TGSSVFDYIHPGDHVEMAEQLGMKLPPGRGMSLSQAAINEDGASSASSSSHSETPEPVES
SSPSLLAPDNSLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRIRMALTHSRSVPNQ
IMGMVVVAHALPPPTINEVRIDCQMFVTRVNMDLKIVYCENRISDYMDLTPVDIVGKRCY
QFIHAEDVEGIRQCHLDLLNKGQCVTKYYRWIQKNGGYIWIQSSATIAVNTKNSSEKNII
WVNYVLSNPEYKDTPIDITQLPNLPEKTSESSETSESESESKENSDGENTKPEEKSMQHP
EGDAEPEMDTKRQHPSSSQQDMKRHEEDSSSNPESQESDDSLEASDGEQEHDTAIRAGGG
AGPGLERLARLGSLEGLGAMGGLDNLGGLPIKVEHYGEGEEAQLHNSLTSSSEEEEDEDE
GGEVQDCNDAGVQNCRKRRKVQKWDGSRSRRLRLSAPPSPVAAGETPSQVDSSGAASVTP
PHLLTSGGSPKSAAASVLKIKTEMVEPINFDNDSSIWNYPPNREISRNEAPYSMTSKPAP
GGHESFPPSQAGALQVVIPESVLTPPGAEGAGGRKPPYNGSSAPSSSSSATSLAPPSNTS
SADPLSPPLSASPRDKLQATPTTTSSSSSSSSSSSSSSSLVYSGDLEALQRLQAGNMVLP
LVHRVSGTLDSTSTAAPRVYTTGTIRYAPADVTLAMAQSNLLPNAAMNFVDGPGFGLDPK
TPMEMLYHHVHRLNMSAAAATGPFVGSPAPTGNGSLGGQVPTTANVFTTAEGLFSTLPFP
VYSNGIHATQTALERKED
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgatcaggatctttcccgacttcagcgtgcaggtgacggcctcggcggccggagcggcc
ggggttggaggcggcggcggcggcggcgccggcggcgggatggtggccggcccgccggtg
gggcgcgtgccggttcccggagccacgaacgggaccccgcagagcctgcaggggatcggc
gcctaccagcagagtgacccctactgggagcggccgtctaatgcaggcagctgctccagc
gcccggcccaagacccttcacctggcgggccagcagcacacttcgtctccatggcttcag
gctctgaggaaggagaagtctcgggatgcggcgaggtcacggcggggaaaagagaacttt
gaattttatgagttagccaagatgctgccgctgccgggcgccatcacgagccagctggac
aaggcctccatcatccggctcaccatcagctacctgaagatgagggacttcgccaaccaa
ggagacccgccctggaacctgcgcatcgagggccccccgcccaacacctcagtcaaagct
atcggttctcagaggaggaggagtcccagcgccgttgcctcagagatcttcgaacctcac
ctgggtagccacattctgcagtctctggacggcttcgtatttgcactaaataaggagggg
cgcttcctctacatctctgagacggtctccatctacctgggcctgtcacaggtggagctg
actgggagcagtgttttcgactacatccacccgggagaccacgtggagatggcggaacag
cttgggatgaagcttcctccaggacgaggaatgagtctgtcccaagcagccatcaacgag
gacggggcctcctctgcctcttcttcatcgcactcggaaacacctgaaccagtggagtcc
agcagtcccagccttctggctccagataactccttggaaagatcctttttcatccgaatg
aagtccactctcacaaagagaggcgtgcacatcaaatcctcaggatataaggtgatccac
atcacgggccgtctgcggatccggatggctctgacgcacagccgctcggtgcccaatcag
atcatggggatggtggtggtggctcacgctctgccgccgcccaccatcaacgaggtccgc
atcgactgtcagatgtttgtgaccagagtcaacatggacctgaagattgtctactgtgaa
aacaggatcagtgactacatggacctgactccggtggacattgtggggaagagatgttac
cagttcattcatgctgaggatgtggaggggatccggcagtgtcacctggacttgctgaac
aaaggtcagtgtgtgaccaaatattaccggtggatccagaagaacggtggttacatctgg
atccagtccagtgccaccatcgccgttaataccaagaactccagcgagaagaacatcatc
tgggtcaactatgttctcagtaatccagaatacaaagacacgccgattgacatcacccag
ctgccgaatctgccagaaaagacttccgagtcatccgagacctcagaatccgagtccgag
tccaaagaaaactcagacggtgaaaacacaaagcctgaggagaagtcgatgcagcatcct
gagggagacgccgagcccgagatggacaccaagcggcagcatccgtcctcctcccagcag
gacatgaagcggcacgaggaggacagctccagcaaccccgagagccaggagagcgacgac
agcctggaggcgtccgacggggagcaggagcacgacacagcaataagagcgggagggggg
gccggacccgggctggagaggttagccagactggggagcctggaaggactcggcgccatg
ggtggactcgacaacttaggcgggcttccgatcaaagtggagcattacggagaaggagaa
gaagcacaactgcacaactccctcacctcctcatcggaggaggaggaggacgaagacgag
gggggggaggtgcaagactgcaacgacgccggagtccagaactgtcgaaagaggaggaaa
gtacaaaagtgggacggatccagaagcagaaggctccggctgtcggcgccccccagcccc
gtcgcggcaggggagaccccatcgcaggtcgactcctcgggggccgcctccgtcaccccc
cctcacctcctgacctccggaggctcccccaagagcgcagcggcgtccgtcctgaagatc
aagacggagatggtggagcccatcaacttcgacaacgacagcagcatctggaactacccc
cccaaccgcgagatctccaggaacgaggccccgtacagcatgacctccaaaccagccccg
gggggtcacgagagcttccctccatcgcaggccggcgctctgcaggtggtcattcccgag
tctgtgctcacgcccccgggagctgagggagcagggggcaggaagccgccctacaacgga
agctcggctccttcctcctcctccagcgccaccagtttggctcctccctcaaacacgtcc
tccgccgaccccctgtccccccctctgtctgcatccccgagggacaaactacaagccact
cccaccaccacctcctcctcgtcctcctcctcgtcctcctccagctcttcgtcctcactg
gtgtattctggtgaccttgaagcgctgcagcgtttgcaggccggtaacatggtcctccca
ctggttcaccgggtctcagggactctggactccacgagcaccgcggctccacgtgtctac
accaccggcaccatcaggtatgcccccgcggacgtcacgctggccatggcacagagcaac
ctgctccccaacgccgccatgaactttgtggacggcccgggattcggcctggatcccaag
acgccgatggagatgctgtaccatcacgtccacaggctcaacatgtctgccgccgccgcc
accggcccgttcgtgggctccccggcgcccacgggtaacggctctctggggggccaggtg
ccgacgacagccaacgtcttcaccacggcggagggccttttctccacgctgccattcccg
gtctacagcaacgggatccacgcaacacaaaccgccctggagaggaaggaggactaa
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