Oryzias melastigma (Indian medaka): 112151812
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Entry
112151812 CDS
T07439
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
oml04054
]
112151812 (nlrc5)
Pattern recognition receptors [BR:
oml04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
112151812 (nlrc5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
Atypical_Card
NOD2_WH
AAA_30
ABC_tran
Motif
Other DBs
NCBI-GeneID:
112151812
NCBI-ProteinID:
XP_024136648
LinkDB
All DBs
Position
LG6:26592412..26626636
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AA seq
1897 aa
AA seq
DB search
MDNDSHLEDKDVNSVLAQESSKLCHILSNQSESVIRMLYQRMIDEDECRDKQATSTASAW
TSADHVKALLDYYRSANATKCRIFLQSVCMLCEGIPMHLEARLMSVACSGCDGAQSSEDQ
PIKRPRIDYWEEYVVEGKNLLISRWRRLTDRLVKAVELDKVWVNFRNVNRGRDRPDQTPA
SSDRGFNTAEPDGDYGFSDSKVTLENFLRGCKGKVTFLVGQAGSGKTLLMSCLGQQWGNG
LGPFPASYLLVLLEFRQLNQLSRSLSLSELLFQHYLPSNRGNDAEKAIVDYLLSNPEQSC
WVLDGYDEFHWKIKKHRMPCGVLNLEEPLPVADLISGLLNRQLLPGSTVLVTCRARDIVD
FDSVSDKVGELLEWDQNEIKEYVHRFFGVEDRTIGVEATKLLLSNRHLLAMSSVPALCNI
CCICLKHLLLKDRDANSRSTEDEQRSKATKNTIPTKEMDMQVFEKEKDRRENETQNTQHS
GEREESQDMETKTANGRENFSATSAQVPNTLTQVYLTAVAAFLSRHPDQGGGDNRPKAAR
SSLSNTVNTLSTVVQYPSELCELSQVAWKGLEESKILFMKEDVPENILKLSVKTRLFSQV
ELRCHDGDLVNAYSFIHLTVQEFLAALRIMTSHEVSDAQLKKRFSLKTRWTTKSNQKTPF
TDSLYLYVCGLASPNCTEVLVRVARASGMKGVQSWVQKRQALVLNLLKPLCHSNTLTGPK
LLQLCRCIQESQNHELAQEAVSSRPTLELRNFRLLPNDIDALAFVVNSAADDAVGLDFGA
CSMEPECLDALSRCQCIHYLSFHSRKYNDQFAENLSCILPGFPNLKKLEFSGASLTAAGA
KSLASALQKCCNITEINLSDNNLQDDGIGHVVELFTKLPNLISVLLGRNNTSLQALNIIV
EKMGSCVNIQQVYADGMKEVTVTFSKRSDGNGHKTKPEPTISLLNQNWNKLGMQNLVKSL
VNCPALSVLDLSGGCWDEETLKTFTHFVPNIKISNKIVLNDSCSSVESLVMLVALLSDCP
LVMELSIRLQNPVQVSVVFPVGTANYSSEMIKTLCLRCCKLIPAHLDRVWQSLRTTSGLT
HLNLSSNCLGDKGLKKLLDFLPHLDKIREINASNNDLSMEGGAVMLAEALCSHNNLTQIQ
ISHEGKDQVILQFNPEKSEIKQQTKIFRILNSNISPSIISKVCRMLINCLFHLELEFSFC
SFEDKALENMVRMLPKMSSLRRLGVDSSITSTNDALILASCLKDNNRVTSVDLSPQSESF
IQFGCMKTEHVSFRLTHFFFSQENVQMLLQILKQEVRLSYLDLSGNQLGDAGVKCLVDFL
PNLQISCFVNVSNNRLSQQGVLDVVSTLHSSSNVCAVEVSLSEDERCLIWFEGGHEKSLS
VRDCILQQDHLIRLAEIVSNCPSLSKIDFKNSLLQSEWIEGFVNMLKPSQTGCSVSFEES
WIKAEQAVDLLRRCMELKTNIQAIRIHHGTLHLTLKETFDPTSARTPTVDQNASMNRTTQ
CSLTEMDFFLDRLDVEEHQYLFSLLPLLPNLTCLSVAVKEGSMSIVEELSQVISQSASIQ
SLNLSGHVINDPAAHSMTAFLPRLRSINLSHCVWSPAGELQVIKALQQSIPLENLCLDCV
QLSEVGWTALAQVLNNSSSIRSLRLNEIVKAGGQIEADRMLDLLTVMEGNAQIEEIGLDA
WRMSEGGIQQLTKFLPDWKELKIISLSKNLIGDPSGEKLLDALRSCILLKELHLSGNGLG
DLTAAKMSLVLPSLTHLTVLDISENHLGRDGAAALSTAVRSLKKLTRINLTSVGTSELSL
VAASLAGCPLIQDVGLGWNSCGDDVALELSGLLPFCHKLARIDLECNLIGVSGVEALVKA
SWTCPSLQVIRLWKNKVPLNEQQRWMLKDRRLTFSST
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atggataatgactctcaccttgaggataaagatgtgaactctgtcttggcccaggaatct
tcaaaactttgtcacatcttgagcaaccaatcagaatccgtcataaggatgctttatcaa
agaatgatagatgaagatgaatgtcgagacaaacaagctacctctactgccagtgcatgg
acttcagcagaccatgttaaagcgttgttggattactacaggtcagccaatgctacaaag
tgtcgcatcttcctgcagagtgtttgcatgctgtgtgaaggcatacccatgcatctggag
gccaggctcatgtcagtggcatgcagtggttgtgatggagcacaatcttcagaggaccag
cccatcaaacgcccacggattgattactgggaggagtatgttgtagaagggaagaattta
ctgataagtcggtggagaagactgacagatcgcctggtgaaggccgtggagctggacaaa
gtgtgggtcaactttagaaatgtaaacaggggcagggaccgacctgatcagactcctgct
tcatcagacagagggttcaacactgcagagcctgatggagattatgggttttcggattcc
aaggtgactttggaaaacttcttacgaggatgtaaaggaaaagtgacatttcttgttggc
caggctggctcaggaaaaactcttctaatgtcttgtttaggacaacagtggggaaatggt
ctgggtcctttcccagcatcctacttgttagttcttttggaatttcgtcagctgaaccag
ctgtcccgctccctgtcactgtctgagctgctgtttcaacattacctcccttcaaatcgt
ggcaacgatgcagagaaagccattgtggactaccttctttccaatccggagcagagctgt
tgggtgttggatggctacgatgaatttcattggaaaatcaaaaaacacagaatgccatgt
ggtgtgttaaacttagaggaacctctgccagttgctgacctgatctcagggttgttgaat
cggcagcttcttccaggaagcacggtgctggtgacttgccgtgcacgggacattgtagat
tttgacagcgtgtcagacaaggttggggagctgcttgagtgggatcaaaatgagatcaag
gagtatgtgcaccgtttctttggagttgaagacagaaccattggagttgaggcaaccaaa
cttcttctttccaatcgacatcttcttgcaatgtcatctgtgcccgccctctgtaacatc
tgctgcatctgtcttaagcatttgctgctcaaggacagagatgctaactctaggtcaaca
gaagatgaacaaaggagtaaagcaacaaaaaacacaattccaacaaaagagatggatatg
caggtttttgagaaagagaaagatagaagagaaaatgaaactcaaaacacacaacacagt
ggagaaagagaagaaagtcaagacatggagacgaagactgcaaatggcagggaaaacttt
tctgcaacttcagcccaagttcccaacactctgacccaggtctaccttactgctgttgca
gcttttctcagccgccaccctgatcagggaggcggagataacaggccaaaggctgctagg
tcttctttgagcaatactgtcaacacactatccaccgttgttcagtatccatctgaactt
tgtgagctgagtcaagtggcttggaaaggcttagaggaaagcaagatcctctttatgaaa
gaagatgttccagagaatattttaaagttatcagtcaagactagacttttttcacaggtt
gagctcagatgtcacgatggagatctagttaacgcttacagtttcattcatttgactgtg
caggagttcttggctgctcttagaatcatgacaagtcatgaagttagtgatgcacagctg
aaaaagagattcagtctgaaaactcgctggacaacaaagtctaaccagaagacaccattt
actgattccctgtacctgtatgtatgtggtcttgcttccccaaactgcactgaagtcctg
gttcgagtagccagagcttcaggaatgaaaggagttcaaagctgggtccagaaacgacaa
gcccttgttctgaatttactgaaacccctttgccacagcaacacactaactggaccaaag
ttgttgcagctttgccgctgcatccaggagagccagaaccacgaactggctcaggaggct
gtgagttcaaggcccactttagaactgcgcaatttccggctgttacctaatgatatagat
gccttggctttcgtagttaactcagctgctgatgatgctgttggtttggattttggagca
tgctcaatggagccagagtgtttagatgctctgtcaaggtgccagtgcattcattacctc
agttttcacagtcggaagtacaatgaccagtttgccgagaacctttcctgtatcttgcct
ggatttccaaacctgaaaaaacttgagttttctggtgccagtctcactgctgctggagcg
aaaagtttggcctctgctctacagaagtgttgcaacatcacggagataaatcttagtgac
aacaatctgcaggatgatggaattgggcatgtggttgagctttttaccaaactgccaaat
ctcatatctgtactgctgggccgaaacaacacctctctgcaagcactaaacattatcgtt
gagaaaatgggttcctgtgtgaacatacagcaggtttatgcagatggtatgaaggaagtt
acggttactttttcaaaaagatctgatggcaatggtcacaaaacaaagcctgagccaacc
atcagcttgttaaaccagaattggaacaagctggggatgcaaaacctggtgaagtctctg
gttaactgtcctgcattgtctgtcctggatctttctggaggctgctgggatgaggaaact
ctaaaaacatttacacactttgttccaaatataaagatctctaacaagattgtcttgaat
gatagctgctcatcagtggagtctttggtgatgctggttgctctgctgtctgactgccct
cttgttatggagctgagtataagattgcagaatcctgtccaggtgtctgtggtgtttcct
gttggtacagcaaactactcaagcgaaatgattaaaacactatgccttcgctgctgcaaa
ctgattcctgctcacctagacagagtttggcaaagcctgagaaccacttcaggtctcact
cacctcaacttgtcgagtaattgtttgggcgacaaaggtctaaagaagttgttggatttt
ctacctcatttagacaaaatacgagaaataaatgccagtaacaatgacctcagcatggaa
ggaggagcagtgatgttggctgaagctctgtgctcccataacaacctgacacaaattcag
atcagtcatgaaggaaaagatcaggtgattttacagttcaaccctgaaaaaagtgaaatc
aaacagcaaacgaagatattcagaatattgaacagcaacatttccccatcaatcatatct
aaagtttgcagaatgctgatcaactgtctcttccatttggagttagagttctccttctgc
tcatttgaggacaaagctcttgaaaatatggtcagaatgttgccaaagatgtcgtctcta
cgaagactcggtgttgacagcagcatcacttctacaaacgatgctctcattctggccagc
tgtttgaaagacaataatcgagttacttcagtggatctcagtccacagagtgaatccttc
atccagtttggctgcatgaaaacagaacacgtcagcttcaggttaactcacttcttcttc
agtcaggagaacgttcagatgctgcttcagatccttaagcaggaagtgcggctgtcttat
cttgacttgtcaggtaaccagttaggagatgctggagtgaaatgcttagtggattttcta
ccaaaccttcaaataagctgctttgtcaatgtcagcaacaatagactgagccagcagggg
gttcttgatgtggtttctactctgcacagctcctccaatgtctgtgctgtggaagtcagt
ttgagcgaagacgagaggtgtctcatttggtttgaaggaggtcatgaaaaatctttaagt
gtcagagactgcattctgcagcaggatcatcttatcagattggcagaaattgtgtccaac
tgtccaagtttgagcaaaatagacttcaagaacagccttctgcagtcagaatggattgaa
ggttttgttaacatgttaaaacccagtcaaacaggatgcagtgtcagttttgaagaaagt
tggatcaaagctgaacaagctgttgatttactgcgtcgctgcatggagctcaagaccaac
attcaagctatcagaattcaccatggaactcttcatctgaccttaaaggagacttttgat
ccgacctctgcaagaacaccaactgtggaccagaatgcatccatgaacagaaccacccaa
tgctcactgactgagatggacttcttcctcgacagactggacgttgaagaacatcagtat
ctgttttccctcctgcctttgctgccaaatctcacctgtctcagtgttgcagtgaaagaa
gggtccatgtccatcgttgaggagctctcacaggtcatctcacagtctgcttccattcag
agcttaaatctgtcaggtcatgtgattaatgacccagccgcccacagcatgacagcgttc
ttacctcgccttcgatcaatcaatctgtcccactgtgtgtggtctccagctggagagctg
caggtcatcaaagccctgcagcagagcatccctttggaaaacctctgtctggactgtgtg
cagttgagtgaagtgggttggacagctttagctcaggtcctaaacaacagcagctccata
cggagcctcaggctaaatgagattgtaaaagcaggtggacaaatagaggccgacaggatg
ctggatctcctgactgtcatggaaggaaacgcacaaatagaggagatcgggttggacgcc
tggaggatgtctgaaggggggattcagcagctgactaagttccttcctgactggaaagag
ctcaaaataatcagtctctccaagaacctcatcggtgacccgtcaggggagaagctgctg
gatgccttgaggagctgcatcctcctgaaggaactccatttgtccggtaacggcctcggt
gacctcactgctgccaagatgtccctggttctgccgtcactcacacacctcactgtgtta
gatatttctgaaaaccatcttgggcgtgacggtgccgctgctctgtctacagcagtacgg
agcttgaagaagctcaccaggattaatctaacttcagtggggacttcagagctgagtctt
gttgctgccagtctggctggctgccccctcattcaggacgtgggactgggatggaacagc
tgtggagacgatgtggctctggagctctctggactgctgcctttctgtcacaagttagct
cggatagatttggagtgcaacctcataggggtttctggagtggaggctttagttaaagca
tcctggacctgtccttctctgcaagtcatcaggctttggaagaacaaagtcccactgaat
gagcagcagagatggatgttgaaggacaggaggctgacattctcctccacatga
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