Oryzias melastigma (Indian medaka): 112151996 Help Entry 112151996         CDS       T07439                                  Symbol copa Name (RefSeq) coatomer subunit alpha   KO K05236   coatomer subunit alpha Organism oml  Oryzias melastigma (Indian medaka) Brite KEGG Orthology (KO) [BR:oml00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:oml04131]     112151996 (copa)   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:oml04147]     112151996 (copa) Membrane trafficking [BR:oml04131]  Endoplasmic reticulum (ER) - Golgi transport   Retrieval pathways    Coat protein complex I (COP-I)     112151996 (copa) Exosome [BR:oml04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    112151996 (copa)   Exosomal proteins of bladder cancer cells    112151996 (copa) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 TPR_COPA_B Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_WDR90_POC16_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Motif Other DBs NCBI-GeneID:  112151996 NCBI-ProteinID:  XP_024136967 Ensembl:  ENSOMEG00000023019 UniProt:  A0A3B3E1Q8 LinkDB All DBs Position LG17:30026488..30043168 Genome browser AA seq 1221 aa AA seqDB search MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW VARNRFAVLDRLHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDAEGVTLFDVQQK RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV FIYTTSNHIKYALISGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM KIAEIRKDMSGHYQAALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAEALKETFDP EKETVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGVIPGKGKAGQMAADLDMEAA GGEGWGDDAELNMDEDGFMDAPEGLDEGMVKEEGGGWDIDEEVELPPELDVPSGAGGGAE DGFFVPPTKGIAPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFDPYKPLFMQTL SRARTCYLGLPSLPCLRGHPQRNWKDCGAKQGLPAVGLRLADLIARLQQCYQMTTAGRFE EAIERFRAILLSVPLLVVDNKQEIAEAQQLITICKEYIVGLTMETERKKLPKDTLEQQKR LCEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPDVAQQTRK ILAACEKTPTDAHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYSPPFKGQICRV TQVTEIGKDVIGLRVSPLQFR NT seq 3666 nt NT seq  +upstreamnt  +downstreamnt atgttaacaaagttcgaaacgaagtcggcccgtgttaaaggtctaagtttccatcctaaa aggccatgggttcttgccagtctacacaacggagtcatccagctttgggactatcggatg tgcacactgatcgacaaatttgacgagcacgatggtcccgttagaggaattgatttccac aagcagcagcctctttttgtgtctggtggagatgattacaaaatcaaggtgtggaactac aaactgagacggtgcctcttcaccctcttgggacacttggactacatcagaacaaccttt tttcaccatgaatatccctggattctcagtgcgtcagatgatcaaaccatccgcatctgg aactggcagtcaagaacctgtgtatgtgttctgaccggccataaccactatgtgatgtgt gcccagttccacccttctgaggacctggtggtctcagccagtctggaccagactgtgcgg gtgtgggatatctctggtctgagaaagaaaaacctgtctccgggtgctgtggagacagaa gtgcgcggcatctctggggttgacctttttggtgcctccgatgctgtggtgaagcacgtt ctcgagggtcatgaccgtggtgtcaactgggcagccttccatcccaccatgcccctcatt gtgtctggagccgatgaccggcaggtgaagatctggaggatgaatgagtctaaggcatgg gagcttgatacctgccgtggccactacaacaacgtgtcctgtgcggttttccaccctcgc caagagctcatcctttccaactctgaagacaagagcatccgagtgtgggacatgtccaag aggaccggagtgcagactttccgacgggatcatgaccgcttctgggtgctgggagcacat ccaaacctcaacctgtttgcagctggtcatgacagtggtatgattgtattcaaactggag cgggaacgcccggcatatgccgtacacgggaacatgctgtactacgtgaaggaccgcttc ctccgtcagctggacttcaacagcagcaaagacactgctgtcatgcagctccgcagtggt tcaaagttcccggttttcagcatgtcctacaaccctgctgagaatgcggttctcctctgc accagagcaaccaacctggagaacagcacttatgacctgtactccattcccaaagaaagt gactcccagaaccctgatgcaccagaggggaaaaggtcctccggtctgacggcagtttgg gtagcaaggaatagatttgctgttctggaccgcctgcactcccttctgatcaagaacctg aagaatgaaattgtgaagaaagtccaggtgccgagctgcgaggagatcttctatgcaggc accggctcgctgctgctgcgcgatgctgagggcgtcacgctgttcgatgtgcagcagaag cgctctctggccactgtcaagatcgccaaagtcaaatacgtggtgtggagcgccgacacc agccatgtggcgctgttggctaaacatgctataatgatctgcaaccgtaagctggagagt ctctgcaacattcacgagaacatccgggtgaagagcggggcctgggacgagagcggggtc ttcatctacaccacctccaaccacatcaaatatgccctcatctctggtgaccatggcatc attcggaccctggacctgcccatctatgtgacccgtgtgaggggcaacagcgtttactgc ctggacagagagtgcaggcctcgcgttctcaccatcgaccccacagagtaccgcttcaag ctggccctggtcaaccgcaaatacgacgaggtgcttcacatggttcgaaatgccaagctg gtgggccagtcaatcatcgcctacctgcagaaaaagggctaccccgaggttgccctgcac tttgtgaaagatgagaagactcgcttcagtctggctctggagtgtggaaacattgaggtg gctttggaagcagccaaggccctggatgagcgcagctgctgggagcgtctgggtgaggcc gctctgctgcagggccaccaccaggttgtggaaatgtgctaccagaggaccaagaacttt gacaaactcactttcctctacctcatcactggtaatttggctaagctacgcaagatgatg aagatcgctgagatcaggaaggacatgagtggtcactaccaggcggctctctacctggga gatgttagtgagcgggtgcgcatcctgaagaactgtggacagaagtccttggcttatctc actgcagccactcatgggctggatgaagaggctgaggctctgaaggagacgtttgaccca gaaaaggagacggtgccagaggttgatcctaatgcacagctgctgcagcctcctccaccc atcaaccccctggacaccaactggccccttctcaccgtgtcaaagggctttttcgaagga gtcattccaggaaagggaaaagcaggtcagatggctgcagatctggacatggaggcagct ggtggtgagggctggggagatgatgctgagctcaacatggatgaagatggcttcatggat gctcctgaaggcttagatgagggaatggtgaaagaggagggtggaggctgggacattgat gaagaggtggagcttcctcctgagctggacgtcccatctggagcaggtggaggagctgag gacggcttcttcgttccgcccaccaaaggcattgctccaacccagatgtggtgcaacaac tcccagctgcctgtggaccacattctggccggctcctttgagaccgcaatgagacttctc cacgaccaggttggagttgtgaactttgacccctacaagcctctgttcatgcagactctg tccagagcccgcacctgttacctgggcctcccgtcgctgccctgtctgcgtggtcatcct cagagaaactggaaggactgtggagcaaagcaagggcttcctgctgtgggactgcgtctc gctgacctcatcgctcgcctgcagcagtgctaccagatgaccactgctgggaggtttgag gaagccatcgagcgcttcagagccatcctcctgtctgtgccgctgctggtcgttgataac aagcaggagatagcagaggctcagcagctgataacaatttgtaaagaatacattgtgggt ctgaccatggagactgaaaggaagaaactgcctaaagatacgctggaacagcagaaaaga ctctgcgagatggctgcttatttcacccactgtaatctgcagccggtgcacatggtgctg gtgctgcgcacggccctgaacctcttcttcaaactgcggaacttcaaaacagctgctggc tttgcacgacgcctcctggagcttggaccaaagccagacgtcgcacaacagactcgcaaa attttggccgcctgtgagaagactccgacagacgctcaccagctgaactacgacccccac aatccctttgacctgtgcgcggcctcttttgttcccctgtaccgcgggcgtcctgtggag aagtgcccgctgtctggagcatgttactccccacccttcaaaggacagatctgcagggtc acacaggtgactgagattggaaaggatgtgattggtctgcgtgtgagtccactccagttc cgctaa

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