Oryzias melastigma (Indian medaka): 112152017
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Entry
112152017 CDS
T07439
Symbol
fgd4a
Name
(RefSeq) FYVE, RhoGEF and PH domain-containing protein 4a isoform X1
KO
K05723
FYVE, RhoGEF and PH domain containing 4
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
oml04990
]
112152017 (fgd4a)
Domain-containing proteins not elsewhere classified [BR:
oml04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112152017 (fgd4a)
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Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
SOS1_NGEF_PH
PH_13
IQ_SEC7_PH
FYVE_2
RHG20_PH
DUF3972
PH_16
DUF6011
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
112152017
NCBI-ProteinID:
XP_024136993
Ensembl:
ENSOMEG00000022155
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All DBs
Position
LG6:complement(32221880..32291980)
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AA seq
872 aa
AA seq
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MLFKRRLTMKRRRKYWFWSRKSKTSKMCLLCCYARRGKTPCFQTRSAEDESCVAVKIEQS
LTLGSSSSSSSPAYKQSSVPIVQACLNRASEASANRSKARVNGRGSNSRPRLPSKPEVPP
KPAHLLSPVTAPSSPLRSVQPLSFKPRMEESGIKPAATTRERIRDKQSKVSDLISRFEEN
SHTDNKRDGSPVKAVGKASHFSPAHRAHQRTEASRVQENHSSAPGQDAQKPATNGVLVQT
MEQEERNHRSLEIKAAGLVNGDMGSAEQGEDLSPPRVERTVSERNSENGTGNQAEPEPRT
EEGGTDHNETKEQKLFKIASELLHTEKAYVARLHLLDQVFCAKLMEEANKGTFPVDVVKN
IFSNISSIHAFHSQFLLPDLEKRMDEWASTPRIGDILQKFTPFLKMYAEYVKNFDKAMEL
LKQWSDRSPQFKAIILEIQSQEICGCLTLQHHMLEPVQRIPRYEMLLKDYLKKLPDKHPD
ERDAQKSLEIIATAATHSNTAIRKSENLKKLMEIYEMLGEEEDIVNPSNEFIREGHILKL
AARNTSAMERYLFLFNNMLLYCVPKFSLGGPKYTVRTRIGIEGMTVRETTNEDYPHTFQV
SGKERTLELQASSEQDKAGWIKAFQETIEVFQQKNESFKNALKEVEEVSKAELGKRAPRW
IRDNEVTMCMKCKESFNALTRRRHHCRACGYVVCWKCSDNKAPLEYDGNKMNKVCRDCYS
TLTGERSTEDGKKERKGILEIEAAKFTESSIICGFLQHSDKGKLWQKVWCVVPEKDSLVL
YLYGAPQDVKALSSIPLVGYSVDDSSRPTDPSPSFHLSQSKSVHYFAAENEEAKQRWLKV
IRVAVTGETPERPQVNDANANLSDDAQEADAT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgctctttaagaggaggctgacgatgaaacgccggcggaaatactggttttggagtcgg
aaaagtaaaacctcaaagatgtgtcttctctgttgttacgcgagaagaggaaaaactccc
tgtttccagaccaggagtgcagaagacgagagctgtgtggccgtcaaaatcgagcagtct
ttgactctaggcagcagcagcagcagcagcagcccggcgtacaagcagagcagcgtcccc
atcgtgcaggcgtgtctgaaccgggcgagcgaagcgtccgccaacaggagcaaggcgagg
gtcaatggaagaggatcgaacagcaggcctcggctgccctctaaacctgaagtgcctcca
aagccagcacacctcctgagccccgtgacggcaccctcgtccccgctgcgcagcgtccag
ccgctgtcattcaaacccagaatggaggagagcggaatcaaaccagcggctacaacccga
gagcgaatccgggacaaacagtccaaagtgtcggatctgatcagccgctttgaggagaac
agccacaccgacaacaagagagacggctcccccgtcaaagccgtcggcaaggcctcccac
ttcagcccggctcaccgcgcccaccagaggacggaggccagccgggtccaggagaaccac
tcctctgccccggggcaggatgcccagaaacctgccaccaacggggtgctagtgcagacc
atggagcaggaggagaggaaccatcgcagcctggagatcaaggctgcaggcctcgtaaat
ggagatatggggagcgccgagcaaggcgaggatctttcacctccacgtgtggaaaggacg
gtttcagagaggaactctgagaacggcaccgggaaccaagccgagccggagccgaggacg
gaggaaggcggcaccgaccacaatgagacgaaagagcagaagttgtttaaaatcgccagt
gagctcctgcacacagagaaggcgtacgtggctcgacttcacctgctggaccaggtgttt
tgtgctaagttaatggaggaggccaacaaaggaaccttccctgtggacgtggtgaagaat
atcttctccaacatctcgtccatccacgccttccacagccagtttctgcttccagacctg
gagaagcggatggacgaatgggcatccacgcctcgcattggagacatcctgcagaagttc
acacccttcctcaaaatgtacgcagagtacgtgaagaactttgacaaagcgatggagctg
ctgaaacagtggagcgaccgctcgcctcagttcaaagccatcattctggagatacagagt
caggagatctgcggctgcctgacgctgcagcatcacatgctggagccggtgcagagaatc
cctcgatacgagatgctgctgaaagactacctgaagaagctgccagacaaacacccggat
gaaagagacgcacagaaatctttagaaataattgccacagcagcgactcactccaacact
gcaatcaggaaatctgaaaacttgaagaaactgatggagatctatgagatgctgggcgag
gaggaggacatcgtcaacccgtccaacgagttcatccgagagggccacatcctgaagctg
gcggccaggaacacctcggcgatggagcggtacctcttcctgttcaacaacatgctgtta
tattgcgtgccgaagttcagcctgggggggcccaagtatacggtgaggacacggatcggt
atcgaaggcatgacggtccgggagaccaccaacgaggactacccccacaccttccaggtg
tcgggaaaggaaaggaccctggagctccaggctagctcggagcaggataaggcgggctgg
attaaggctttccaggagaccatagaggtcttccagcaaaagaacgaatcctttaagaac
gccttgaaggaagtggaggaagtttcgaaagcggagctggggaagcgggcccctcgctgg
atccgggacaatgaagtgaccatgtgcatgaagtgtaaggagtctttcaacgcgctgacg
cggcggaggcaccactgcagagcctgcggctacgtggtttgttggaagtgctcagacaac
aaggcgccgctcgaatacgacggcaacaagatgaacaaagtctgcagagactgttacagc
actctgacgggcgagcggtcaaccgaagacgggaagaaggaaagaaaaggcatcctggag
attgaggcagctaaattcacggagagcagcatcatctgcggcttcctgcaacactcggat
aaaggcaaactctggcagaaagtttggtgcgtcgtcccggagaaggacagcctagtgctt
tatctctacggagcgccacaggacgtgaaggccctgagttccatcccgctcgtagggtac
tcggtggacgacagcagccggcccacggacccctcgcccagcttccacctctcccagtcc
aagtctgttcactacttcgctgcggagaacgaggaagcgaagcagcgctggctgaaggtg
attcgagtggcggtaaccggagagacgccagaacggcctcaagtcaacgacgccaacgct
aacctgtcggacgacgcacaggaagccgacgccacataa
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