Oryzias melastigma (Indian medaka): 112152186
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Entry
112152186 CDS
T07439
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112152186 (tdrd12)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
112152186 (tdrd12)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112152186 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Tudor_krimper_1st
Helicase_C
Motif
Other DBs
NCBI-GeneID:
112152186
NCBI-ProteinID:
XP_024137351
LinkDB
All DBs
Position
LG6:1203574..1230439
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AA seq
1396 aa
AA seq
DB search
MSKIFIQKIESPSCLWCRVIQEPGVDTETAEQYSKLQARMNLFYNDLTQDQSRLIPTSFE
ENEVYAVFWEERKFWCRVVVKSITVDSVTCLACCFLVDYGERIVVSSDKIRLTVPDFLQL
PFWAQKFHLSGIKPTTLRVPFLEEKAELIPSSQWDISATLYLHSLLKASLSMEAVLLESE
SDSTAIELYLSTGDFKICVNDELVSKKFAYYSEESGRGGLDPWGRIPVKFCSILTQIDSA
SSIKLEAVKPPPTSVKPEQPLEVEAEDLLASYPQDDGCDLEVLEKQLSSSSISMSDPEPC
SAVSDSLEDTDSCLAASLGKNQDLFRFLKHLNPDDKTQHSLPGVGLDEELNMCRPVQKNK
HSTTWTEQKLSLKDEAVCSSEGENPAEEENGPGKLITSGRAEAGKPFCGRKDLASSCFLE
WLNPGPSNPDQEDSDDAAPHCDPCLSGVLVHSSLPVEACSSLEDAPVTYPLRRALLKQKY
GSLSSADCYSWPAVAQGNSTVIISHSSDQPLSFLAPILTHILLNSLYTPRMSSLGPMVLV
LCPGWERVQMVFSVLEETKVSESLHPDVALLGVGKDQAKNFKLPKNCLMLVTTPFTMVRL
LSCHCRLFQRLYHLVLDEADQLFARAPDQMKTILQHFHKVVSTEEKTLYPQQLVCVAKRW
SPQMEAMVTAYMPYPSIVITIPEEAGLYGNVQQIVLMTVESMKISVLMGVLDFSPLVCQK
TLIIANSSQDVDYVYEAVSSKSAFCLKTHEGLTHQFDSVVQQWSKDIGAGSHLILVTTDE
CLKCLGIRDATCVVHYEFPAARKWFGRRLFCMFKNFRNLSKQTQRCSSVARSVLLVSEKD
SRHIVGVMRYLRRTDALLPPELLAFEQGVLKARDEQKMSRPLCSYLKSFGVCRDSSVCPD
RHTFSPLLDRSTLPAAGIIEVVPLFIKTASVFCGRLVRKEDREFDEMVSGMASYYADKKP
EARDLQEGGLYAVQEEDFFHRVKILSLPKSDGSLFFCVYVRFIDVGREKEVKSYQILKLP
EHFHSLPEQAVEITVCGVKPADAEIDWHPKVIRTISQKIRGLQHRATAVLSLGNTIFVDP
MVRVTQVPGMKTLINEYNVQLEILNTGMGFRNPDHLDLLKALCQDEKACSHKEDVHPSGF
WDMLSCVNVRTTAENGESSEPRKSVESTNKSLVQIPPPPEVPLVSACGDKSPFDSRTVGL
ERSSVSAEQMKKFLSASISNGRENGRAGNPSLCKNDVFKGADRKSTGQIPNSGLTDCRNS
AKSFHPQVCWYQTSQCVIVTVRLMNPENQFCDFFPDRVTYSGTVNGRIFRTCLDLQHRIA
VDRCSWEMKSNQPVLKLVKQQQGHWDRLVRVKNIFVTFDTEHLDDDKDEESDGRWFRANT
GEEDVYVNSECDSESD
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaatcttcatccaaaagattgagagtccttcttgcctctggtgtcgagtgatt
caagaacctggtgtcgacacagagacagcagaacaatattccaagcttcaggctcgaatg
aaccttttctacaatgacttgacccaggaccagtcgaggctgattcccacttcgtttgag
gaaaatgaggtgtatgctgtgttctgggaggagaggaagttttggtgtcgcgttgtggtg
aagtccatcacggtggattcagttacctgtctggcctgctgcttcctggtcgactatgga
gaaagaatcgtagtttcttcagacaagatccggctgacagttcctgactttctgcagctg
cctttctgggcgcagaagttccacttgtctggaatcaaaccaacaacactgcgggttcct
tttctggaggagaaggccgagctcattccatccagtcagtgggacatctctgccacactt
tacctgcacagtctgctcaaagcatctctctccatggaggctgtgctgttggaaagtgag
tcagactcaactgctatagagctttatctgtccactggggacttcaagatctgtgtcaac
gacgagttggtgtccaagaagtttgcatattacagcgaagagtctggacgaggtggtctg
gatccatggggcagaattcctgtcaaattctgctccatcttaacccaaattgactcagcg
tcttccatcaagctggaggccgttaaacctccaccaacgtctgtaaaaccagagcagcct
ttggaagtggaagcagaggatctgctggcatcttaccctcaggacgatggttgtgacttg
gaggtcctggagaagcagctgtcatcaagcagcatatctatgagtgacccagaaccttgt
tctgcagtgagtgattcattagaagacacagactcttgtttggctgcgtctttggggaaa
aaccaggatctattcaggttcctaaagcatctgaatcctgacgacaaaacccagcattct
cttcctggggtgggtcttgatgaagaattgaacatgtgtcgacctgtgcagaagaacaaa
cactcaactacgtggaccgaacaaaaactcagtctgaaagatgaagctgtttgcagcagt
gaaggagaaaatccagcagaggaggagaacggtcctggtaaactaataacgtctggacgg
gcagaagcagggaaacccttttgtggtcgaaaagacttggcgagctcctgctttttggag
tggttgaaccccggaccctctaatccagatcaagaggattcagatgacgcagctccccac
tgtgatccatgcctgagtggggttttggtgcactcttccctccccgtagaagcctgcagc
agtctggaagacgcccccgtcacttatcctctccgtcgggcgctgcttaaacaaaagtac
ggcagcctgtcttcagctgactgctacagttggccggctgtggcccaggggaacagcact
gtgatcatctcccacagctctgaccagccactcagtttccttgcccccatcctaacccac
atcctgttgaactctctgtacaccccccgcatgtcaagcttagggcccatggtactggtg
ctctgtccaggctgggagagggtccagatggtgttcagtgtgctggaagagaccaaggtt
tctgaaagccttcatccggacgtcgctcttctgggggtgggcaaggaccaagccaaaaat
tttaaacttcccaaaaactgccttatgttagtgaccacgccgttcacaatggtccgtctg
ctgtcctgccactgccgcctcttccagcggctgtaccacctggtgcttgacgaggccgat
cagctcttcgctcgtgctcctgatcagatgaaaaccatcttgcagcacttccacaaagtc
gtttccaccgaggagaaaaccctttaccctcagcagctggtttgtgtggctaaaaggtgg
agcccccaaatggaggctatggtgactgcttacatgccgtaccccagcatcgtcataacc
atccctgaagaagctggtctctatggaaacgttcaacagatcgtccttatgactgtggag
agcatgaagatctcagtgctgatgggggtgttggacttcagccccctcgtctgccagaag
actttgatcatagcaaattcttcacaggatgtagattacgtttatgaggctgtgagcagc
aagtcagcattctgtctgaagacccacgagggcttaacccaccagtttgactctgtcgtt
cagcagtggagcaaagacattggagctggttctcaccttattctagtgaccacagatgaa
tgcctgaagtgtctcggcatcagagatgcaacatgtgtcgttcattatgaatttccagca
gcacgcaaatggtttgggagaagactgttctgcatgttcaaaaacttcaggaacctttct
aagcaaacccagcgctgctccagtgttgctcgctccgtgctgctggtctcagagaaggac
tctcgccacatcgttggtgttatgcgctacctcagacggaccgatgccctgcttcctcca
gagctgctggccttcgagcagggggtcctgaaagcccgtgacgagcagaaaatgagtcgt
cctctctgcagctacctaaagagctttggagtgtgcagagacagcagtgtgtgtcctgat
cgacacacattctctcctctgctggatcggtctacactccctgcagctggaatcatagaa
gttgttcctctcttcataaagactgcatcagtgttttgtggccgtttggtcaggaaggag
gacagggagtttgatgaaatggtctctggcatggcttcttattatgctgacaagaaacca
gaagccagagatcttcaggaaggagggttgtatgctgttcaggaggaggacttcttccac
agggtgaagatcctgtctttgcccaaaagtgacgggagtctgttcttctgcgtctatgtc
cggttcatcgatgttggcagagaaaaggaagtcaagtcctatcagatcttaaagctgccg
gagcactttcattcccttcccgagcaggccgtggagatcacggtgtgcggggtgaagcct
gctgatgccgagatcgactggcaccccaaggtcatcagaaccatcagtcagaagatccga
ggactgcagcaccgggccacagcagttctaagcctgggaaacactatttttgttgatccg
atggtccgtgtcactcaggtgccaggcatgaaaactctcatcaatgaatacaacgtccag
ttggagattctgaacactggaatggggtttagaaacccagatcatctggaccttctgaag
gcattgtgccaagatgaaaaggcttgcagtcacaaagaggacgttcacccatcaggattc
tgggatatgctgtcatgtgtgaatgtcagaaccacagcagagaatggagaatcaagtgaa
ccaaggaagtctgtggagtcaacaaacaagtcgttggtccagatacccccacctcctgaa
gtacccctggtctcagcttgtggtgacaagtcaccgtttgacagccgaactgttggtttg
gagagatccagcgtttctgctgagcagatgaagaagtttttgtctgcaagcatcagtaat
ggaagagaaaacggtcgtgcaggaaacccatccctttgtaaaaacgatgtgtttaaaggt
gccgatcgaaaatccacaggccagattcctaacagcggtctgacggactgtagaaactct
gcaaagagcttccacccacaggtatgttggtaccagacatcccagtgtgtgatagtaaca
gtgagactgatgaatccagagaaccagttctgcgatttctttcctgacagagtgacctac
agtggcacagtgaacggtcggatcttcagaacctgcctggacctgcagcacagaattgca
gttgacaggtgctcctgggaaatgaagtccaatcagccagttctcaagctagtgaagcag
cagcagggacactgggacagactggtcagggtcaagaacatttttgtcacgtttgacacg
gagcaccttgatgatgacaaagatgaggagtcagatggacggtggttcagagcaaacaca
ggagaggaggacgtctacgtgaactctgagtgtgacagtgagagcgactga
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