Oryzias melastigma (Indian medaka): 112152332
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Entry
112152332 CDS
T07439
Symbol
chd2
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2 isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oml03036
]
112152332 (chd2)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112152332 (chd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
112152332
NCBI-ProteinID:
XP_024137600
LinkDB
All DBs
Position
LG6:19758470..19787086
Genome browser
AA seq
1814 aa
AA seq
DB search
MMKSKNKKQEDEASTRSNASSNSASEESNHSASESGSQSESEHGSERRRRSHNSESNSTS
ESESHSESESESAESKSQQTAEVKDKPVRKKERLADVKKMWEEHPDMYGVRRSNRSRQEP
ARLNIGAEGSSDSESESPKRKSSRSKKKENIWKDDDSNDDEEEEDVEASDSTDSEQEEKK
VRSRRLPARRPQTKSSSAKKQQSQKGRKSRKQESSGDEDEDDDDDEEEDDDEEDTPKRQT
RRRGATKVKSYKEDQHDFETDSDDLIEMTGEAGEEQQDDDSETIEKIIDTRIGKKGVVGA
ATTVYSVEENGDPSEGFDPEKDEGETQYLIKWKGWSYIHNTWESMDSLTQQKVKGLKKMD
NFKKKTEEMNAWLRRACPEDIEFHNCQQELTADLNKQFQIVERVIATKTGKTAGTSDFPS
HSHKTSSSNEPEYLCKWMGLPYSECSWEDGALVMKKFQRCIDSFTNRNSSKTVPSKDCKV
LKQRPRFVALKKQPSYIGDENLELRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTI
SFLSYLFHQHQLYGPFLLVVPLSTLTSWQREFDTWAPDMNVVVYIGDVMSRKTIRDYEWV
NHQTKRIRFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLMEFRSNH
RLLITGTPLQNSLKELWSLLHFLMPDKFDSWEDFEDEHGKGRDNGYQSLHKVLEPFLLRR
VKKDVEKSLPAKVEQILRVDMTAQQKQFYKWILTRNYKALSKGTRGSSSGFLNIVMELKK
CCNHCFLIKQPEDGDGEVQQDILQGVVRGSGKLVLLDKLLTRLRERGNRVLIFSQMVRML
DILAKYLTKKRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASAD
TVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVI
QRMDTTGRTVLDSNSGNTNSNPFNKEELTAILKFGAEDLFKEAEGEESEPQEMDIDEILR
LAETRESDQGSSATDELLSQFKVANFSSMEETNQEFEDKPAREWDDIIPEDQRRKVEEEE
KQREMEDIFMLPRSRSSNKRAQANDSDSDVGSKLKNRSSGSDSETDDSDDDKKPKKRGRP
RARKNNVEGFTDAEIRRFIKAYKKFGSPLERLEAIARDSELVDKSIADLKRLGELIHSSC
VSAVQEHEELLKENPVEAKGPGKRRGINIKISGVQVNAKSIIQHEEEFEPLHKAVPSNPD
DRDKFKLTCRAKVAHFDVDWDLQDDTQLLLGIYEHGFGNWDLIKTDPDLKLTEKILPDDP
SKKPQSKQLQARAEYLLKLLKREQDSTDGVKGDEVKVKKRRPRAKKDKVLKDEQGNDISS
PRLSDNPSEEGELKDEVTEKSNVKKRQKKKDNKENKEKQGTPKKEKNADKEKKVSKPRKE
KAKGAKGKKTQGPVHITAGSEPVPIEGKEDDELDQETFSICKERMRPVKKALKQLDKPDE
GLSDQEQLQHTRTCLLKIGDRITECLKSYNDPEHVKLWRRNLWIFVSKFTEFGARKLHKL
YKMAQKKRSHEEEKEHKKKEDLPGRMKSFRPEASGSSRDSTGTQPSSKSGSHPGQSGPHG
HHREPYNSANKRHFGGDDRGDWQRDRKYGYAGNSSQQWQGDRHHPYDPHRYKDHYGDRRP
HGDPYRSSGSFRNNISPRKRPYEQYGNDRDHRGHRPYYDRHSDPKRRRPDEFRSNYHQGS
EGSLQDFRRMSDHRPTGPSGPEHYSRPFHPDKPPPLLDPRSPLNQKSPQDSRSPLERPVE
PNATTDPNWINRKT
NT seq
5445 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagagtaaaaataaaaagcaggaggatgaagcatcgactcgaagcaatgcatcc
agtaactcagcctcggaggaatccaaccactcggcatcggagtcgggaagtcagtcagaa
agtgaacatggcagtgagaggaggaggaggtcacacaactccgagtcaaacagcacctcc
gagtcagaaagccattccgagtcggagagcgagtctgcagagtccaaatcgcagcaaact
gcagaagtcaaagacaagccagttaggaagaaagagcgtctggctgacgtgaagaagatg
tgggaggagcatccagacatgtacggtgtcaggaggtcaaatcgcagcagacaggagcct
gctcgcctcaacattggagctgagggcagcagtgactctgaaagcgaaagccctaaaagg
aaatcatcacggtctaagaagaaggaaaatatctggaaagatgatgactcaaatgatgat
gaagaggaggaggatgtggaggcttccgacagtacagacagtgagcaggaagagaaaaaa
gttagatccagacgacttcctgctagaagaccgcagaccaagtcctcgtctgccaaaaag
cagcagtcgcaaaaaggaagaaaatcccggaagcaggagtcatcgggtgatgaagacgag
gatgatgatgatgacgaagaggaggatgacgatgaagaagacaccccaaaaagacaaacg
aggagaaggggagccacaaaagtcaaaagctataaagaggaccagcacgactttgagacc
gactctgacgacctgattgaaatgacgggggaggccggcgaggagcagcaggatgacgac
agcgagaccatcgagaagattattgacaccagaatcggcaagaaaggagtggtgggagct
gccaccaccgtgtattcagtggaggagaatggagacccgagcgaagggttcgacccggaa
aaagatgaaggggagacgcagtatctgatcaagtggaagggctggtcctacatccacaac
acctgggagagcatggactccctgacgcagcagaaggtgaagggtctgaagaagatggac
aacttcaagaagaaaaccgaagagatgaatgcatggttgaggagggcgtgccccgaggac
atagagtttcataactgccagcaggagctcacagctgacttgaacaagcagtttcagatt
gtggagcgagtcattgcaacgaaaaccgggaagacggcaggaacgtccgactttccctct
cacagtcataagacctcatcctccaacgaacccgagtacttgtgcaaatggatgggtttg
ccgtactcggagtgcagctgggaagacggcgccctggtcatgaagaagttccagcgctgc
attgacagcttcaccaaccgcaactctagcaagaccgtcccatccaaagactgcaaggtg
ttaaagcaaagacccaggtttgttgctctgaagaaacagccgtcgtacatcggggacgag
aatctcgagctgagagattaccagctggacggcttgaactggctggctcactcctggtgc
aggtgcaacagcgtcatccttgctgatgagatggggctgggaaaaaccatccagaccatc
tccttcctgtcctacctgttccaccagcatcagctctacgggccctttctgctggtggtc
cctctgtccacgctcacctcgtggcagagggagtttgacacctgggctcccgacatgaac
gtggtggtttacatcggcgacgtcatgagcaggaaaaccatccgtgactacgagtgggtg
aaccatcaaaccaaaagaatccgcttcaatgcacttttaaccacctatgagatcttactc
aaagataagggagtcctcgggaacatcaactgggcgtttctgggcgtggatgaagctcac
aggctgaagaacgacgactccctcctctacaaaaccttaatggagttcagatccaatcac
agactcctcatcaccggcactcctctgcagaactccctcaaggagctctggtctctgttg
cacttcctcatgcctgacaagtttgattcctgggaagactttgaggatgagcacggaaaa
gggcgggacaacggctaccagagcctccacaaagtcctggagccgttcctgctgcggcgg
gtcaagaaagacgtggagaagtctctgcccgccaaagtggagcagatcctccgagtcgac
atgacagcacagcagaaacagttttacaagtggattttaacaagaaactataaagcactt
tccaaagggacgcgtggcagctcctccggcttcctgaatatcgtcatggagcttaagaag
tgctgcaatcactgcttccttattaaacagccagaagacggagacggtgaggtgcagcag
gacattctgcagggggtagtgagaggcagcgggaagctggttctgctggacaagctactc
acgaggctccgagagagaggaaaccgagtcctgatcttctcccagatggtcaggatgctg
gacattctggccaagtatctcaccaagaagcgctacccgtttcagcggctggacggttcc
ataaagggggaaatccgaaagcaggcgctggaccactttaacgcagagggctctgaggac
ttctgcttcctgttgtccaccagagcgggaggtttgggcatcaacctggcctctgcagac
actgtcgtcatcttcgactctgactggaaccctcaaaacgaccttcaggctcaagcaaga
gcccacaggatcggccagaagaagcaggtgaacatataccgactggtcactaagggaacg
gtggaggaggacatcatcgagagggccaagaagaagatggttttagaccatctggttatt
caaagaatggacaccacagggcggactgttctggacagcaactcaggaaacacaaattca
aaccctttcaataaagaagagctgacggccattctgaagtttggggcggaggatctgttc
aaagaggcagaaggagaagagtctgaacctcaggagatggacatcgatgagatcctgagg
ctggcagagaccagagaaagcgatcaaggctccagtgccactgatgaacttttatcgcag
tttaaagttgcaaacttctccagtatggaagaaaccaatcaagagtttgaggataaaccc
gcgcgggaatgggatgacatcattccagaggaccagcggcgcaaagtggaggaggaggag
aagcagcgggagatggaggacatcttcatgctgcccaggagcaggagctctaacaaacgg
gcgcaggccaacgatagcgacagcgacgtgggctccaaactgaagaaccgctcctccggc
tccgacagcgagactgacgacagcgacgacgacaagaagcccaagaagagaggacggccg
agagctcgcaagaacaacgtggagggcttcacagacgcagagatccgcaggttcattaaa
gcctataagaagttcggatctcctcttgaacggttggaggccatcgccagagactcggag
ctggtggacaaatccattgcagatctgaagagactcggagagctgattcactccagctgt
gtgtctgcggtgcaggagcacgaagaactcctgaaagagaatccagttgaagctaaaggc
cccggcaaacgacggggaatcaacatcaagatttcaggagtgcaggtcaacgccaagtcc
atcatccagcacgaggaggagtttgagcctctgcacaaagcagtcccctccaacccagac
gaccgggacaagtttaagctgacgtgcagggccaaagtagcacacttcgacgtggactgg
gacctgcaggacgacactcagctcttactgggcatctacgagcacggctttggaaactgg
gatttaatcaaaacagatcctgacctgaaactcacagaaaagattctcccagatgacccg
agcaagaagcctcagtctaagcagctgcaggccagagccgagtatctcctcaagctgctg
aagagagagcaggacagcacagacggggtgaaaggagacgaggtcaaagtgaagaagagg
aggcctcgggcgaagaaggacaaggttctcaaagacgagcagggtaacgacatctcctcg
ccccgcctctccgataacccgtcagaggagggcgagctgaaggacgaggtaacggaaaag
tccaacgtgaagaagaggcagaagaaaaaggacaacaaggagaacaaagagaaacaggga
acgccgaaaaaggagaagaatgcggacaaagagaagaaggtttcaaagcccagaaaagag
aaggctaaaggagccaaagggaaaaagactcaaggtccagttcacatcacagccgggtcc
gagcccgtccccatcgaaggaaaggaggacgacgagctcgaccaggagactttcagtatt
tgtaaggagcgcatgaggccggtgaaaaaggctctgaagcagctggacaaaccggatgag
ggtctgtcggatcaagagcagctccagcacactcgcacgtgtctgctgaagatcggcgac
cgcatcacagaatgccttaaatcctacaacgacccggaacatgtcaagttgtggcgacgg
aatctctggatttttgtgtccaagttcacagagtttggtgcgaggaagctccacaaactt
tacaaaatggcccagaagaagcgatcccacgaggaagagaaggagcacaaaaagaaggag
gacctccctggacggatgaagtccttcagacctgaagcctccggctccagccgagactcc
acggggactcagccgtcctccaagtctggctctcacccgggccagtcgggaccgcacgga
caccacagggagccgtacaactccgccaacaagcgtcactttggaggtgatgatcggggg
gattggcagagagaccgtaaatacggctacgcaggaaacagcagccagcagtggcaggga
gatcgacaccatccctacgacccgcacaggtacaaggatcactatggcgaccggcgtccg
cacggagacccctaccgcagctcaggcagcttccgcaacaacatctcgcctcggaagaga
ccctacgagcagtacggcaacgaccgggaccacaggggtcaccgaccgtactacgacaga
cactcagaccccaaacgaaggcgtcctgacgaattccgctccaactaccaccaaggatct
gaaggctccctccaggacttccggcgcatgtcggaccacaggcccacgggtccgtcagga
cccgaacactacagccggcccttccaccccgacaaaccccctccccttttggaccctcgc
tcccccctcaaccagaagtctccccaggactcccgctcgccgctggagcggcccgtcgag
cccaacgccacgacagacccgaactggatcaaccggaaaacatag
DBGET
integrated database retrieval system
