Oryzias melastigma (Indian medaka): 112152349
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Entry
112152349 CDS
T07439
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112152349
Transcription factors [BR:
oml03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112152349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112152349
NCBI-ProteinID:
XP_024137631
Ensembl:
ENSOMEG00000003292
LinkDB
All DBs
Position
LG6:complement(3625918..3774492)
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AA seq
778 aa
AA seq
DB search
MMSSMRATPPFRPPSEEAEAMGQDSAVWADDEPEAPKETGSPLLPDQPHSDELQPVREKR
MDADWENVAPAAMDNESNKSCSVYSHRNNSTSPTKLEECPRDRGEPMTGFPFGTPERRKG
SLADVVDTLKQKKLVELTKTEQDETSCMERLLSKEWKERVDRLNANELLGEVKGTPESLE
EKERQLSTMIGQLINLREQLLAAHDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQLL
QQQHKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPGMSYKPGENYPM
QFIPSTMAAAAASGLSPLQLQQLYAAQLASMQISPGAKMAPLPQAPNSSSPLSPSTLKSE
KQAASPVAQIKEEGSTQPLNLSARPKTAEPLRSPTSPTQSLLSGSKTSPTGIGKGRIPSP
IPNMGRNSSLDILSSLNSTALFGDQDAVLKAIQEARSMREQIQREQLHHQQHPQQPGPQS
LDAKLSALSGMSLNNGNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSSITE
ARVFREARGRNTSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMSN
QEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQF
FVGPQPPISLGNSTGGVGVYPGAITMATAATRSPHLTSDCSSNSVSPEPTVPVIQSTFKV
KSEPGGGGGSNGGGVGSLDLPGDPANGDEDMDMYEDFEDDPKSDYSSDHETQEAVGAN
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgcgagcaactcctccctttcgcccaccgtctgaggaggcagaagcg
atgggtcaggacagcgcagtctgggccgacgacgagccagaggccccaaaggagacgggg
tcccccttgttacctgatcagcctcactcggatgaacttcagcccgtcagagaaaagcgg
atggatgctgactgggaaaatgtcgcccctgctgcgatggacaacgaaagcaacaaaagc
tgctctgtctactcccatcggaataactcaacgtctccaaccaagctggaggagtgcccg
agggaccgtggagagccgatgaccggctttccctttggaacaccagagcgccgcaaagga
agcctggcagacgtggtggacactctgaaacagaagaaactggtggagttgacaaagaca
gaacaagacgagacatcttgcatggagaggctcctgtccaaggagtggaaggagcgagtt
gaccgcctgaatgccaacgaactgctgggggaagttaaaggcacgccagagtcactcgag
gaaaaggagcgccaactttccaccatgatcggtcagctgatcaaccttagagagcagctt
ctcgccgcccatgacgagcagaaaaagatggccgcctcgcagctggagaagcagaggcaa
cagatggagctggccaggcagcagcaggagcagattgccagacagcaacagcagctcctg
cagcagcagcacaagataaacatcctccagcagcagatccaggtccagggtcacatgcct
ccgctgatgatcccggtgtttccacacgaccagcggtctctggctgccgccgccgccgca
cagcaaggcttcctcttcccccccggcatgtcctacaagccaggtgagaattacccaatg
cagttcattccatcgacaatggcggcggcggcggcgtctggactcagccctttacagcta
cagcagctgtatgccgcacagctggcaagcatgcagatctcaccaggggccaaaatggct
cccctccctcaggctcccaactcctccagtcctctgtccccttccaccctgaagagcgag
aaacaagccgccagcccagtcgctcagatcaaggaggaaggatccacgcagcccctcaac
ctctcagccagacctaaaacagccgagcctctccgctccccgacgtcccccactcagagt
ctgctgtctggaagcaagaccagccccaccggcatcggcaaaggtcgcatcccgagccca
atccccaacatgggcaggaacagctccctggacatcttgtccagcctgaactccacggcg
ctgtttggggaccaggatgcggtgctgaaggccatccaggaggccaggagcatgagggag
cagatccagagagagcagctccaccatcagcagcacccccagcagccggggccccagagc
cttgatgccaaactgtcggcactcagcggcatgagcctcaacaatggcaacaaggagcga
ctacactacgagacactgagccaacatctagggaagctgggggaggacgctgggaagatg
gtccatcgagtcattgacctgacaagaccagaagatttggacgggagtagcatcacagaa
gcgcgtgtcttccgggaggcacggggcaggaacaccagtgagccccacatcaagaggcca
atgaacgccttcatggtttgggccaaagatgagaggaggaagatcctgcaaaccttcccc
gacatgcacaactccaacatcagcaagatcctcggttctcgctggaaagccatgtccaat
caggagaagcagccctactacgaggagcaagcccgcctaagcaagatccacttggaaaaa
tatcccaactacaagtacaagccccggccgaagaggacctgcatcatcgacggcaaaaag
ctgcgcatcggggagtacaagcagatgatgcggtcccggcgccaggagatgaggcagttc
tttgtcgggcctcagccacctatctctctgggcaacagcacaggaggtgtaggagtctac
ccgggcgccataaccatggcaacagctgccacgcggtccccgcacttgacctcagactgc
tcaagcaactcggtgagcccagagccgactgtccccgtcattcagagcacgttcaaggtg
aagtctgagcccggcgggggcgggggcagcaacggcggtggggtcggctccttggatctg
cccggtgaccccgccaacggagacgaggacatggacatgtacgaggacttcgaggatgac
cccaagtcagactatagcagcgaccacgagacgcaggaggccgtcggtgccaactga
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