Oryzias melastigma (Indian medaka): 112152438
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Entry
112152438 CDS
T07439
Name
(RefSeq) DNA-binding protein RFX7 isoform X1
KO
K09175
DNA-binding protein RFX7
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112152438
Transcription factors [BR:
oml03000
]
Eukaryotic type
Other basic domains
RF-X
112152438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX_DNA_binding
RFX5_N
Pox_D5
WHD_Cdc6
Motif
Other DBs
NCBI-GeneID:
112152438
NCBI-ProteinID:
XP_024137795
Ensembl:
ENSOMEG00000015971
LinkDB
All DBs
Position
LG6:16438245..16453167
Genome browser
AA seq
1457 aa
AA seq
DB search
MADDQQQPGQKPASGLGSLPALVPGLQGSEANALQFKIKNSICKSVQSKVDGILQDVEKF
TDIEKLYLYLKLPSGPSSGNDKREGTSTPGLCDQSSMSSSRTQQMYAFNWIRNHLEEHPE
TSLPKQEVYDEYKSYCDNLGYNPLSAADFGKIMKNVFPNMKARRLGMRGKSKYCYSGLRK
KAFVHMPSLPNLDLQKSGDGCELMEPTGQSPSAEDEMRSAACGLVCEWAQKVLSRQFDSV
EDLARFLLNSHYIGTKSMAALTVMTGTPTGIKTPTPASAFVPTAEANSFQPQVKTLPSPS
VDAKQQLQRKIQKKQQEQKLHSPLPSGESQVKRTEASTPGPTIPCGSPALLSPQPTIGIV
VAAVPSPVTVQRNRQLMTSPSPVGTAEGKVLPVNFQVVTQSLKQSPKTPQNIPASPVGDR
LARHGTRYAQILPKPSATSAITLRSPPTLLITNSPIKTVMPTPHVSSVNVVKMTAIALAP
PNSSSNGNNTTVRPASAGVSAAAVSDDSQQSQSAAIQPSVVRPGATTSSAGLSSDTKGVS
EVGSDNNSISVAEKHAVAAKEERLTKFRAVSEPTFLVKCPPGVDKGIRIKHDAISSPTSI
SVIGTLDSNNSNCHDSTLYLTVDNHNSNGNASSHGSAAVIHTSSDPCSDAKSPRKRTAAE
SHAIPVKRVFISQQPLATIDNPKPGVGAAVKKIPRPGTPARPESAPCKGTAKHTPVGPTQ
ILALTDTPIAHTEGTQTVVKQQSMMVKHEDHSISTDNNASDQALLQQITGDSRAIPTNSG
PHEASSMRDLKSTIWETQQIPAEHKQPPPDQISMITQPSEASRQLTLTQEMVDFSGTQTS
MEYFPFNDEDMTQDSIVEELVQMEEQMKLKGLFGNCGDISLQGQSTNNQGSILGAHQANT
TFYHSAHSSTTPVQTPTPTPTPTPTPTSEMTLAHSLTRESPCSRMAPVTPVDGAMGRHTP
ISTPLSNCSSSVPPSPVECRNPFAFTPINSSITGYHDASIVSSSPVKPMQRPMATHPDKA
KLEWINNRYNSNSAGPLSNHSISILPSYQDLVDDQFRKPHAFAIPGQSFQSQSRQDAAVL
GRLTPISPVQQQLVTSVTTPTKEESFAVPAPLDNKASASSTSSTFRCRSVSPAVRQRNFS
GNTASQATTTSTTMTTRAVVSPFNSPITSEVLNILSNSQTVGSVHSMVQRSQSVPLNIMM
QSEMLPVQTQSNTTKITNVLLSKMDAEGDDSVRGLGINNLPSNYTARMNLTQILETTPGF
AGGTAHQTSLPVSSSPAAFELQQHGYLTTGSGEQVSFSTDDSQAQAGPGEQDQQQLQQDP
VQTQPQLLLQSTQQQEAEDEQQQLNFNNTVKDLLGEDGLNPSSQLVGQVASELNAVASDF
SNEIRLTSDLSSSITDLNTLDTNLLFDPNQQQEQYEDSTLEELKNDPLFQQICSDTVNSG
FDWLESKDQPTTVEMLG
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgatcaacaacaacctggtcagaagcctgcctcgggattaggctctcttcca
gcgctcgtgccaggactccagggatccgaggccaacgcgttacagttcaaaataaagaat
tcaatttgcaaatctgtacaatcaaaagtggacggcatattgcaagatgttgagaagttt
acagacatcgaaaaactctacctctaccttaagttgccttctggtcccagcagtggcaat
gataaaagagaggggacctccactccaggattatgtgatcagagttccatgtcatcgagt
cgcactcaacagatgtatgcgttcaactggatacgcaatcacctggaggagcacccagag
acatccctcccaaagcaagaagtgtatgatgaatacaagagctattgtgacaatctcggc
tacaatccactgagtgctgcagactttgggaagataatgaagaacgtctttccgaacatg
aaggcacgtcgactgggaatgagaggcaaatccaaatactgttatagcgggttaaggaag
aaagcttttgttcacatgccatccctacccaacctggatctacagaaatctggtgacggg
tgcgagctgatggagccaacaggccagtctccgagcgccgaggacgaaatgagatctgca
gcctgtggactggtgtgcgagtgggctcagaaggtcttaagtcgacagtttgacagtgtg
gaggacttggcccgctttcttcttaatagccactacattggtactaagtccatggctgca
cttactgttatgactggaacacccacagggatcaagactccaactccagcctctgcattt
gtgcccactgctgaagccaactcattccagccccaggtgaagaccctgccctccccgtct
gttgatgcaaaacagcaactgcaacgcaaaatccagaaaaagcagcaggagcagaagctt
cactcacccctgccttcaggggagtcacaagtcaagcgtacagaggccagtacccccggg
cccactatcccctgtggcagcccagccctgctttcccctcagcccactataggaatcgta
gtagcggctgttccgagcccggtgacggtacagagaaacaggcagttgatgacctcacct
agtcctgtagggaccgcagaaggcaaagtgttgcctgtgaattttcaagttgtcacacag
tctctcaaacaatctcccaaaaccccacaaaacatccctgccagtcctgtcggtgaccgc
ctggcacgacacggcacacggtacgcccaaatcctgcccaagccctccgccaccagtgcc
atcacactgcgctctccgccgacgctgctgatcaccaacagccccataaaaactgtgatg
cccactccccacgtcagctcggtcaatgtggtgaagatgacagccatcgctttggcacca
cctaacagcagcagtaacggcaacaacacaacggtgcgaccggcctcggctggtgtgagc
gccgcagccgtctccgatgattcccagcaatcgcagagtgccgccattcagccttctgta
gtcagacccggtgccactacatcatccgctggcctttcctctgacaccaaaggcgtgtct
gaagtcggaagtgacaataactccatatccgttgcggagaagcatgctgtcgcagcaaaa
gaggaacgactgactaaattccgagctgtcagcgaaccaactttcctcgttaagtgtcct
cctggagtagacaaagggattcggataaaacacgacgccatatcctctcccacctccata
tctgtaattggaactctagacagcaataacagtaactgccatgacagtactttgtacttg
actgttgataatcacaactccaacggaaacgcatcctctcacggctctgctgcggtgatc
cacacatcgagtgacccctgctcggacgccaagagccccaggaagcgcacagccgcagaa
tcccacgctattcctgtgaagagagtgttcatttcacaacagccactcgccacaattgac
aatcccaaacctggggtgggtgctgcagtgaagaagattcccagaccaggaacccccgcc
agaccagagagtgccccctgcaaagggacagcaaaacacacaccggtagggcccacacag
atccttgcactcaccgacacacctatcgctcacacagagggaacgcagactgttgtcaaa
cagcaaagcatgatggtgaaacatgaagatcactccatcagcactgacaacaacgcgtct
gatcaggcgttgctgcagcagatcaccggggactcccgtgccataccaaccaactcagga
ccacacgaagcctcttcaatgagggatttaaagagcacaatatgggagacacagcaaata
ccagcagaacacaagcaaccccctcctgaccaaatttctatgataactcaaccttctgag
gcctcccgtcagctcaccctcacgcaggagatggttgacttttcaggcacgcagactagc
atggagtacttcccgttcaacgatgaggacatgacccaagacagcatagtggaggagctg
gtccaaatggaggagcagatgaagctgaaaggtctttttggtaattgtggcgacatctcc
ctgcaaggccagtcaaccaacaatcaaggctccatcctcggtgcacaccaggccaatact
accttctaccactctgctcacagcagcaccacacctgttcagactcccactccgacacca
accccgacacccactcccacttctgaaatgacactcgcacacagcctgaccagagagagc
ccgtgctcccgtatggccccggtcaccccggtggacggagccatgggccgccacaccccc
atcagcacaccgctttctaactgcagcagcagcgtacccccgagtccggtggagtgccgg
aacccgtttgccttcactcccattaactcgagcatcacggggtatcacgacgcgagtatc
gtctccagcagccctgtgaagcccatgcaaagacccatggcaacacaccccgacaaggcc
aagctggaatggatcaacaaccgctacaacagcaactctgcaggcccgctgtccaaccac
agcatcagtattctgcccagctaccaagatctggtcgatgatcagttccgtaaaccacat
gcattcgctattcccggccagtcgtttcagtctcagtcaagacaggatgcagcggttttg
ggccgcttaactcccatttctcctgtgcagcaacagctggttacaagtgttactactccc
actaaagaggagagctttgctgtgcccgcaccgttagataacaaggcctctgcctcgtcc
acatccagtactttccgttgccgtagtgttagcccagcagtccgacagcgaaacttcagt
ggcaacaccgcttcccaggccaccaccaccagtacaacaatgacaacccgagctgtagtc
tcgccctttaactcccccatcacctcggaggtgctcaacatcctgtccaacagccagacc
gtcggctctgtgcacagcatggtccagcgtagccagtctgtgcctctgaacatcatgatg
caaagtgagatgcttcccgtgcagacgcagagcaacaccaccaagatcacaaatgtactt
ctcagcaagatggacgcagagggagacgattcagtccgcggtctgggtataaacaacctc
ccctctaactacacagctcgcatgaatctcacgcagatcctggagactactcctgggttt
gcgggaggaaccgctcaccagacttcgctgcccgtcagctccagtcctgctgccttcgag
ctccagcagcatggctacctcaccactggcagtggagagcaggtgagcttctctactgac
gacagccaagcacaagcgggtcccggcgaacaagaccagcagcagctccagcaggatccc
gtgcagacacaaccacaactcctcctccagagcacacagcagcaggaggcggaggacgaa
caacagcagctcaacttcaacaacactgtcaaggacttgctgggggaggatggcctcaac
cccagctctcagttggtaggccaggtagcttcggagctcaacgctgtggcatcagacttc
tcaaatgaaatcagactgacctcagatctgtccagtagcatcactgaccttaatactctg
gacaccaacctgctgtttgatcccaatcagcagcaggaacaatatgaagactctacactg
gaagaactgaagaacgacccgctttttcagcagatatgcagtgatactgtgaactctggt
tttgactggctagaaagcaaagaccagccgactacagtagagatgctgggctaa
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