Oryzias melastigma (Indian medaka): 112152531
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Entry
112152531 CDS
T07439
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112152531 (lingo1a)
Membrane trafficking [BR:
oml04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
112152531 (lingo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
Ig_2
ig
LRR_9
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
112152531
NCBI-ProteinID:
XP_024137940
Ensembl:
ENSOMEG00000004408
LinkDB
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Position
LG6:complement(9467425..9638287)
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AA seq
615 aa
AA seq
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MAAREATGHSYLVACWRPILILMLGTVLSGSTIDCPSRCECNSQDHSVLCHRKKLMSVPE
GIPPDTRLLDLSKNRIRTINPDEFANFLSLEHLELSENTISTIEPGAFNNLPGLRTLGLR
SNKLKLIQLGVFTGLSNLTELDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSGLEHLSLEKCNLSSVPTEAFTHLHNLITLRLRHLNINIIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIASANLTTIPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNTLSTLEESAFHSVGNLETLAFY
DNPLACDCRLLWVFRRRWRLNFNKQQPTCASPEFVQGKEFKDFPEPLQPNYFTCRKSRIR
DRKPQQKFVDEGAIVHFACQADGDPAPVIMWLSPQKKFITTKTIGRLSVLPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSPAHLHIHSYSPDWPQQPNKTFAFISNQPAETGANGTRAN
VPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGMS
STTVDAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcagccagggaagcgactgggcacagctacctggtggcttgctggcggcccattctg
atcctgatgctgggaactgtactgtctggctccaccatagactgcccatcccgatgtgaa
tgcaattctcaagatcactcagtgttgtgccaccgcaagaagcttatgtcagttcctgag
ggcattccccctgacacaagactgctggacctcagcaagaaccgcatcagaaccatcaac
cctgatgagtttgccaactttctcagccttgaacacctggaactcagtgagaacactatc
tctactattgaacctggagcgttcaacaaccttcccggtttgcggacattggggttgcgt
agcaacaagcttaagctgatccagttgggtgtttttactggcctgagcaatctcacagag
ctggacataagtgagaacaagattgtaatcctgttggactacatgttccaggatttgtac
aaccttcggtctttggaagtaggggacaatgacttggttttcatctcccacagggctttt
catggccttagtggccttgagcacctgagtcttgagaagtgcaacttgtcctctgtgcca
actgaggcttttacccaccttcacaatctgatcactctcaggctgcgccatctcaatatc
aacatcatacgggattactctttcaaacggctctatcggcttaaagtgctggaaatagcc
aactggccatacttggatacaatgaccccaaattgcttgtatggattaaatttgacctct
ctgaccattgccagcgctaacctgaccacgatcccttatgtggccctgcggcacttggtt
tacttgcgctttctgaatctttcctataaccctattcataccatagaggggaataagctt
cacgatcttctgcgtctacaagaattccacctggttggaggcagactggcaatgattgag
ccctactcctttcgtggtctgaactacctgaaaatcctaaatgtgtctgggaacactctt
agcacattagaagagtcagctttccactcagttggcaacctggaaacccttgcattctat
gataatcctctggcctgcgactgccggctcttgtgggtgtttcgacggcgttggcgactt
aacttcaacaagcagcagcccacctgtgcctccccagagttcgtccaaggcaaagagttc
aaggatttcccagaacctctgcagccaaactacttcacctgccgcaagtctaggattagg
gatcgcaaacctcagcagaaatttgtcgatgagggagccattgttcatttcgcttgccaa
gcagacggagatccggctccagtaattatgtggctttcgccacagaaaaagttcatcacc
accaaaacaatcggaaggttatctgtgttgccagatggtacccttgaggtccgctacgcc
cagattcaagataacggcacttatgtatgcatagccagcaatgcaggcggaaatgacacc
tcacccgctcaccttcacattcacagttactcacctgactggccgcaacaacccaacaag
acctttgctttcatttccaatcagcctgccgagactggtgctaatggtacaagagccaac
gtccctttcccgtttgatataaagacactgatcattgcaaccaccatgggtttcatctcg
tttcttggtgttgtcctgttttgcctggtactactgtttctttggagcagaggtaaaggc
aacaccaaacacaacattgagattgagtacgtgccacggaaatcagacgccggcatgagc
agcaccacagtggatgctcctcgcaagtttaacatgaaaatgatttaa
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