KEGG   Oryzias melastigma (Indian medaka): 112152534
Entry
112152534         CDS       T07439                                 
Symbol
lsp1a
Name
(RefSeq) non-muscle caldesmon isoform X1
  KO
K12327  caldesmon
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml04270  Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:oml00001]
 09150 Organismal Systems
  09153 Circulatory system
   04270 Vascular smooth muscle contraction
    112152534 (lsp1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:oml04812]
    112152534 (lsp1a)
Cytoskeleton proteins [BR:oml04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Others
     112152534 (lsp1a)
SSDB
Motif
Pfam: Caldesmon
Other DBs
NCBI-GeneID: 112152534
NCBI-ProteinID: XP_024137946
Ensembl: ENSOMEG00000019976
UniProt: A0A3B3CMH7
LinkDB
Position
LG6:80520..128097
AA seq 546 aa
MSNALLRRNSSKQGLQNLMRLTAQRSIEDAEEVERERRRRAREALHRRNSGSTPGESSPE
SEVLTEDNRFDTSFKPSSSLEEDEGFSDWTQRRDRQKQQRLLELSVGGQEERRENEDVFS
KALPTKTTEIHVASTSRLPRKEEGEILKSRVETEKRMEDDVEERKERKREMLILSRQEVI
QRPNIEVEKRLETKDPYTSKTLKHSVFNGHSPTNEVVSHLKRVNRSSSRNVEPEEAEAIQ
EVEQRLERIRHSLQEKESQELEQLRLKQTEAEQELEELKRRREERQKLRKEEERYREEEE
HQRLAKEEEERRRMKEEIEKRRMEAAERMKSLSTSSTDGEEIFSPFTPKASTQKITEKTE
SLNRSLRKSNSFKKMQPLILMPKIDDKLEQYTSAVENSQEARAVKASLADIPMSPEVVAS
KKNLFEAGEAWSQSPSKGASCKDAEGLKVGVASLINQWVRSQSDGSSGRPSACRAADVKP
GDVMQKKNMWEVMGDSGRQDQRLQGSAAGKKFKFVVTGHGKYEKIPPKDQSGGESNIKSD
SYHISC
NT seq 1641 nt   +upstreamnt  +downstreamnt
atgtccaacgctttgctcaggagaaactccagcaaacagggtctgcagaacctcatgaga
ctgaccgctcagaggagcatcgaggatgctgaggaggtggagagagagcgccgtcgaagg
gcccgggaagcgttacacaggagaaacagcggatccacccctggagaatcatcccccgag
agtgaagtgctaacagaggacaacagatttgacacgagcttcaaaccaagcagttctctg
gaggaagacgagggtttcagtgactggactcaacgcagagacagacagaagcagcagcgt
ctgctggagctcagtgtgggaggccaggaagagcggagggaaaatgaagacgtcttcagc
aaagctctacctacaaaaaccactgaaatccatgttgcttctacaagccgactcccgaga
aaagaagagggagagatcctgaagagcagagtggagacggagaagaggatggaagatgac
gtggaggagaggaaggaaaggaagagagaaatgctgattttaagcagacaggaagtgatt
caaaggccaaatattgaggtggagaagagactggaaactaaagatccctacacctcaaag
actttgaaacacagcgtcttcaatggccacagccccaccaatgaagtcgtgtcacacctc
aagagagtaaacagatccagcagcagaaacgtggagccggaggaggctgaggccatccag
gaggtggagcagcgactggagaggatccgccacagcctccaagaaaaagagagccaggaa
ctggagcaactgagactgaagcaaaccgaggctgaacaggagctggaggagctgaagagg
aggagagaggagaggcagaaactccgaaaggaagaggagcgttatagagaagaggaggaa
caccagcggctcgccaaagaagaggaggaaaggagacggatgaaggaggagattgagaag
aggaggatggaggctgcagaaaggatgaagagtctgagcacttccagcactgatggggag
gaaatattcagtccatttaccccaaaagcttcaactcaaaagatcacagagaagacagaa
tccctgaaccgatcgctgaggaaaagtaacagctttaagaagatgcagcctctcatcctg
atgcccaagattgatgacaaactggagcagtataccagtgctgtggagaactctcaggaa
gcacgagcagtaaaggcatcactggctgatatacccatgtccccagaagtcgttgcctcc
aagaaaaatcttttcgaggctggagaggcctggagccagagtcccagcaaaggagcctcc
tgcaaggatgctgaaggtctgaaggtgggcgtggccagcctgatcaaccagtgggtcaga
agccagtcagacggcagcagcggcagaccgtcagcttgcagagcagcagatgtgaagcct
ggagatgtgatgcagaagaagaacatgtgggaggttatgggagactcagggaggcaggat
caaagactacagggttcagcagctggaaaaaagttcaaatttgttgtcactggtcatggc
aaatatgagaaaattccacccaaggaccagagtggaggagaatccaatataaagtctgat
tcatatcatatcagctgctga

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