Oryzias melastigma (Indian medaka): 112152534
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Entry
112152534 CDS
T07439
Symbol
lsp1a
Name
(RefSeq) non-muscle caldesmon isoform X1
KO
K12327
caldesmon
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112152534 (lsp1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112152534 (lsp1a)
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
112152534 (lsp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
112152534
NCBI-ProteinID:
XP_024137946
Ensembl:
ENSOMEG00000019976
UniProt:
A0A3B3CMH7
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Position
LG6:80520..128097
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AA seq
546 aa
AA seq
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MSNALLRRNSSKQGLQNLMRLTAQRSIEDAEEVERERRRRAREALHRRNSGSTPGESSPE
SEVLTEDNRFDTSFKPSSSLEEDEGFSDWTQRRDRQKQQRLLELSVGGQEERRENEDVFS
KALPTKTTEIHVASTSRLPRKEEGEILKSRVETEKRMEDDVEERKERKREMLILSRQEVI
QRPNIEVEKRLETKDPYTSKTLKHSVFNGHSPTNEVVSHLKRVNRSSSRNVEPEEAEAIQ
EVEQRLERIRHSLQEKESQELEQLRLKQTEAEQELEELKRRREERQKLRKEEERYREEEE
HQRLAKEEEERRRMKEEIEKRRMEAAERMKSLSTSSTDGEEIFSPFTPKASTQKITEKTE
SLNRSLRKSNSFKKMQPLILMPKIDDKLEQYTSAVENSQEARAVKASLADIPMSPEVVAS
KKNLFEAGEAWSQSPSKGASCKDAEGLKVGVASLINQWVRSQSDGSSGRPSACRAADVKP
GDVMQKKNMWEVMGDSGRQDQRLQGSAAGKKFKFVVTGHGKYEKIPPKDQSGGESNIKSD
SYHISC
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgctttgctcaggagaaactccagcaaacagggtctgcagaacctcatgaga
ctgaccgctcagaggagcatcgaggatgctgaggaggtggagagagagcgccgtcgaagg
gcccgggaagcgttacacaggagaaacagcggatccacccctggagaatcatcccccgag
agtgaagtgctaacagaggacaacagatttgacacgagcttcaaaccaagcagttctctg
gaggaagacgagggtttcagtgactggactcaacgcagagacagacagaagcagcagcgt
ctgctggagctcagtgtgggaggccaggaagagcggagggaaaatgaagacgtcttcagc
aaagctctacctacaaaaaccactgaaatccatgttgcttctacaagccgactcccgaga
aaagaagagggagagatcctgaagagcagagtggagacggagaagaggatggaagatgac
gtggaggagaggaaggaaaggaagagagaaatgctgattttaagcagacaggaagtgatt
caaaggccaaatattgaggtggagaagagactggaaactaaagatccctacacctcaaag
actttgaaacacagcgtcttcaatggccacagccccaccaatgaagtcgtgtcacacctc
aagagagtaaacagatccagcagcagaaacgtggagccggaggaggctgaggccatccag
gaggtggagcagcgactggagaggatccgccacagcctccaagaaaaagagagccaggaa
ctggagcaactgagactgaagcaaaccgaggctgaacaggagctggaggagctgaagagg
aggagagaggagaggcagaaactccgaaaggaagaggagcgttatagagaagaggaggaa
caccagcggctcgccaaagaagaggaggaaaggagacggatgaaggaggagattgagaag
aggaggatggaggctgcagaaaggatgaagagtctgagcacttccagcactgatggggag
gaaatattcagtccatttaccccaaaagcttcaactcaaaagatcacagagaagacagaa
tccctgaaccgatcgctgaggaaaagtaacagctttaagaagatgcagcctctcatcctg
atgcccaagattgatgacaaactggagcagtataccagtgctgtggagaactctcaggaa
gcacgagcagtaaaggcatcactggctgatatacccatgtccccagaagtcgttgcctcc
aagaaaaatcttttcgaggctggagaggcctggagccagagtcccagcaaaggagcctcc
tgcaaggatgctgaaggtctgaaggtgggcgtggccagcctgatcaaccagtgggtcaga
agccagtcagacggcagcagcggcagaccgtcagcttgcagagcagcagatgtgaagcct
ggagatgtgatgcagaagaagaacatgtgggaggttatgggagactcagggaggcaggat
caaagactacagggttcagcagctggaaaaaagttcaaatttgttgtcactggtcatggc
aaatatgagaaaattccacccaaggaccagagtggaggagaatccaatataaagtctgat
tcatatcatatcagctgctga
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