Oryzias melastigma (Indian medaka): 112152606
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Entry
112152606 CDS
T07439
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112152606 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oml04515
]
112152606 (lrrc4ca)
Cell adhesion molecules [BR:
oml04515
]
Immunoglobulin superfamily
NGL family
112152606 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
Ig_2
LRR_14
LRR_9
LRRNT
DUF6821
Ig_6
Sp38
DUF7617
Syndecan
RIFIN
Motif
Other DBs
NCBI-GeneID:
112152606
NCBI-ProteinID:
XP_024138047
Ensembl:
ENSOMEG00000012048
LinkDB
All DBs
Position
LG6:complement(24234590..24301097)
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AA seq
641 aa
AA seq
DB search
MFNKMTSSQKLQMMRGPRWNRALSDHLLVLLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGA
FNGLASLNTLELFDNRLTIIPIGAFDYLSKLKELWLRNNPIESIQSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLVPLVKLDELEMSGNQLSVIRPGSF
KGLVHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPSHHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKVRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENSTFSYFTTVTVETIETTHEGFTTIVQQKVGPT
PSAGTWEAISPTSTTTTTVRTSLSTRVTEKTYTNPVTEGSMNGLDEVMKTTKIIIGCFVA
ITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCGGPGMEGHLTLPPLEHEHLN
HYNTYKSAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagatgacatcctcccagaagctgcagatgatgcgaggtcctaggtggaac
cgggccttgtccgaccatttacttgtattgctcctggccctccagctgcttgtggtggca
ggactggtgcgtgctcagacgtgtccctctgtctgctcctgtagcaaccagttcagcaaa
gtcatttgcacccgcagaggcctgagagaagttcccgatggcatttctaccaatacacgc
tacctgaacctgcaggaaaatctcattcaagtcataaaagtggacagcttcaagcactta
agacatttagagattctccagctgagtaaaaaccacatacgcaagatagaacttggggct
ttcaatggacttgccagcctcaataccttggaactttttgataaccgcctcaccatcatc
cctatcggagcatttgactacctatcaaaacttaaagaactttggcttcggaataaccca
atagaaagcatccaatcttatgcttttaacagagttccttcattgagaaggctggatctt
ggagagctcaaacgcctttcctacatatcagagggagcctttgaagggctaagtaatctg
cgttacttaaacttgggaatgtgcaatctgaaggaaatacctaatcttgttccgctggta
aagctggacgaacttgagatgtctggaaatcagctgtctgtaatccggcccggttccttt
aaagggcttgtccacttgcaaaagctttggatgatgcatgcgcagatccaaaccattgag
agaaactcctttgatgacctgcagtcactcgtggagcttaatcttgctcacaacaacctt
acccttttgccccatgatctcttcacccctttacatcacctggagagggtgcacttacac
cacaacccttggaattgcaactgtgacatcctgtggttaagctggtggcttaaagagatg
gttccagccaacacaagttgctgtgcccgctgcagctcgccctcccatcataaggggcgg
tacattggcgagctggaccagaattactttcactgttatgctcctgttattgtggagcct
cctgcagacctaaacgtgacagagggaagtgctgcagagttgaaatgtagagccagctcg
ttgacctcagtcagctggattacacccaacggctctatcatgacacacggtgcgtacaag
gtcagaatctccgtgttgaacgacggtacgctgaacttcaccaatgtcaccatgcaagac
actggcacgtatacatgtatggtcagtaattctgcagggaacacaacagcgtctgcaacc
ctcaacgtgtcttctacagagaacagcactttcagctactttactacagtgacagtggag
acgatagaaacgacgcatgaaggcttcactacaatcgttcagcagaaggtgggccccaca
ccctctgctggtacatgggaggccatttccccaacttctacaaccaccaccacagtccga
acctcactgtccacccgggtcacagagaagacctacactaaccccgtcacggagggctca
atgaatggcttagacgaggtaatgaagacaaccaagatcatcattggctgctttgttgcc
ataacacttatggcagctgtcatgctgatcatcttttacaagatgcgtaaacagcaccac
cagcagaaccaccacgcaccaacacgcaccattgagataatcaatgtggacgaggactgc
gggggaccaggcatggaaggccatttgactctgcctcctcttgagcatgagcacctgaac
cattacaacacctataagtctgcatacaaccacgcctccactatcaattccatacacagt
tcagcccatgaacctttgttaatccgtgccagttctaaagataatgtgcaagagactcaa
atctaa
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