Oryzias melastigma (Indian medaka): 112153068
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Entry
112153068 CDS
T07439
Symbol
vimr2
Name
(RefSeq) low molecular weight neuronal intermediate filament
KO
K05640
glial fibrillary acidic protein
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oml04131
]
112153068 (vimr2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oml04812
]
112153068 (vimr2)
Membrane trafficking [BR:
oml04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
112153068 (vimr2)
Cytoskeleton proteins [BR:
oml04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
112153068 (vimr2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
CENP-F_leu_zip
CCDC89
CEP135_TSGA10_CC
Phage_scaffold
CEP89
ODF2_C
ENTR1
HH_AprE
DUF3450
SHE3
CCDC39
ATG16
COG3_N
DUF8567
FKBP15
Cast
CCDC146_CC_N
NET2A
ATG14
ZapB_rel
NOCA1_mid
CCDC192
PI3K_P85_iSH2
DUF1664
T4SS_LegC2C7
DUF6594
DUF8221
CLIP1
TPR_MLP1_2
DUF8104
CCDC122
OVT1
HALZ
DUF724
Motif
Other DBs
NCBI-GeneID:
112153068
NCBI-ProteinID:
XP_024138724
LinkDB
All DBs
Position
LG10:complement(4929497..4946092)
Genome browser
AA seq
381 aa
AA seq
DB search
MLRVSSYRKLFEEDWGRNGGSSVECAGQYRASVRGAVTDKCCCGDKLDFVATKALNKEGL
NRFVQERSTIAVLNDRLVRLIEVAHCFEEENDALERQIAELEEKLNSQNGSSIQVKEHAC
SLDAVVERLRMQRDEILGDTEELKKELEHLKEEYEWIEQQKTLIRQEQDDVAAEVDAVTA
ECLALKEQVAIYEDQLAVMGAQHSKEVESLLEPDERTLAAAAITFGSPDITPALNVKEYH
CQLAKSLQFERGASSAMAVRGDGGKLEEGRTPGSKVKDLPEDASELKTLISELQKELSEL
EKANEELEDEVENRRSAHMEEVADLESSIDEMRQEEANLELQMREQCDDYKELLNQKMAR
DMEIAAYRSLMEEEEGRLCSL
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgctgagggtgtcttcctaccgaaagctctttgaggaggattggggtcggaatgggggg
tcgagtgtggagtgtgccgggcagtaccgggcctctgtcagaggcgcagtgactgacaag
tgttgctgtggcgacaagttagactttgtggccaccaaagctctgaacaaagaaggtctg
aaccggtttgttcaggagcgcagcaccatcgctgttctgaatgaccgcctggttaggctc
attgaagtggcccactgctttgaggaagagaacgatgctcttgaacgtcaaatcgccgag
ctggaggagaagctgaacagtcaaaatggatccagcatccaagtgaaggagcacgcctgc
agcctggatgcagtggtggaaagactgcgcatgcagagggatgagatcttgggtgacaca
gaggaactaaaaaaagagcttgaacatctgaaggaagaatatgagtggattgagcagcag
aagacgctcatccggcaggagcaagatgatgttgccgcggaagtggatgctgtgacagca
gagtgtctggcactgaaggagcaagtagctatctatgaagaccagctggctgtcatgggg
gcccagcacagcaaggaagtggagagtctcctggagccagatgaaaggactctggcagcg
gcggctattacgtttggcagccctgatatcactccggccttgaatgtgaaggagtaccac
tgccagctggctaagagccttcagtttgagcgtggcgcatcctccgctatggctgtcaga
ggtgatggagggaaactggaagagggaagaactccagggtcaaaagtcaaagacctgcca
gaggatgcaagtgagctgaagacactgatttcagagctccagaaggagctctccgagtta
gagaaggccaacgaggagctggaggacgaggtagaaaacaggagatctgcacacatggag
gaagtagctgacctggagagctccatagatgaaatgaggcaggaggaggctaacctggaa
ctgcagatgagggagcagtgcgatgactacaaggagctgctgaaccagaagatggccaga
gacatggagattgctgcctacaggagtctgatggaggaagaggagggtcggctttgcagt
ctgtga
DBGET
integrated database retrieval system
