Oryzias melastigma (Indian medaka): 112153099
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Entry
112153099 CDS
T07439
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112153099 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oml03000
]
112153099 (atrx)
03036 Chromosome and associated proteins [BR:
oml03036
]
112153099 (atrx)
Transcription factors [BR:
oml03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112153099 (atrx)
Chromosome and associated proteins [BR:
oml03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112153099 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
112153099
NCBI-ProteinID:
XP_024138771
Ensembl:
ENSOMEG00000007314
UniProt:
A0A3B3D6W3
LinkDB
All DBs
Position
LG10:16797876..16831446
Genome browser
AA seq
2089 aa
AA seq
DB search
MSLGSTESLQEKMSGKEEEPGSSAGSTKPSSSRNKMKPTSVAKHTEENESAPSAESDNEG
ATSDNPSEGNTSSRSKGTLVMRPTGNENKGAMKLRVDFKQKLSDDALQKKVSCTACGKQV
NQFQRNSLCEHPALKVLICKSCYNYYTSDDIGKDSDGMDEQCRWCAEGGKLICCDYCNNA
FCKKCILRNLGRKELSNITDENSKWHCYVCRSDPLQDLVFKCRRIMEKLEHAQLKQHKAE
KREERDKKKKKSRTTKEHKALANGKEHAEGSGVMTFSYKKMEIPKEYIKKAKRLVETTTG
LNNTFIQFIQQTAEDQGDRSIRYRHLKAFKAVLSDLRKAHNVLEAALEPEFKSMELQNGN
DVQHVKKSSSTAEPTGIDKMDADADSGDGVDAAPKSDTEPHNEADAIPEMDVNEEPQDET
GSARDSGVNLKADENQDWGGGLQSGMSEDEEKETNEEASAVQDAVVSKDEEQTNEQEAGS
EEVSSKAVMKDHQTETDALEKIIKTETCEEPVSTGEMSLDQDIMSVPPSVPEELFQMVES
LADSSTLSKPDTNSVPANEAKSNSTPAEDQLPQPKVKNLIVKLTPVPVVKTSGSRSSRSK
SKEKSEESKSKKKTEDDDQSASKVKKETESPPPSRRSSRLKTTPLRKQSEKKVDGDSSES
EEDVKSKSKPSKKSSDHAKKLDKDNNTPAQTIEDSDSDEIPHALLEKAAESKSTDEEQES
TKGKKGSIKSDDSSQNTENLSKRKRKTATSESDTENKSQKPSKKKKQKDSDCSDSDSDQK
KGTSKVSKRRSSRTKKNKAKEEEKKDSPESKTATRKRSYEKKRKGKSPKGSSQLQSSSSE
EEEEEQAEGDSGDDSDAQKIKPIMDDNVINSVGIFQQSSGDEIDNKDSVNPVCAEDDDDD
PENRIAKKMLLAQIKSHYSSGAESSSEEEEKEEKSSKKVKKDKQDEEDEDDEEEDEDDDE
GTEDSDSDVEVKKSVKRHKLLRHKLSMSEGESGDGKEEGKKKKKRKEGKKKSRSTSDSDD
SSDSDFKKSDSSSGSALSEEVSGSEDDGKRRKTRSSKKKDDEKQRSYKQQKKKRRRIKVQ
DSSSSNEKSGGEDDDDQDGEGRKGRKKIRKILKDDNLRTETRDALKEEEERRKRIAEREA
LREKLREVIVVEEASKVTCPVTTKLVLDEDEETKEPLVQVHRNLVTKLKPHQVDGVQFMW
DCCCESVKKIQKSPGSGCILAHCMGLGKTLQVVTFLHTLLLCEKLDFATALVVCPLNTVL
NWLNEFEKWQYGLKDEESLEVTELATVKRPQERAYALQTWHESGGVMIMGYEMYRNLTQG
RNIKSKKLKETLRKTLVDPGPDLVICDEGHILKNEASAVSKAMNAIRTKRRIVLTGTPLQ
NNLIEYHCMVNFIKENLLGSVKEFRNRFINPIQNGQCADSTLHDVRIMKKRAHILYEMLA
GCVQRKDYTALTKFLPPKHEYVLSVRMTPLQCKLYRHYLEHFTGVGNALEGGRGRAGTKL
FQDFQMLSRIWTHPWCLHLDYISKENRGFFDEDSMDDFVVSETDESSMSLSSENEKPKKK
KNQGKGKKKESEESDSDDVEVIKEWNSSSRGRNGEGRNRREPVEEPQPSGAEPGSPRSAD
WHKEFVTEADADILAHSGKLTLLFEILRMAEEVEDKVLVFSQSLISLDLIEDFLELSCKD
EDDEDAKPSPYKGEGKWYRNIDYYRLDGSTNAVARKKWAEEFNDTSNTRGRLFLISTRAG
SLGINLVAANRVVIFDASWNPSYDIQSIFRVYRFGQIKPVYVYRFLAQGTMEEKIYERQV
TKQSLSFRVVDQQQIERHFTMNELTELYSFEPDMLDDPSEKKSKKATPVLPKDPLLAEML
QNNKDQLVCYHEHDSLLDHKEEEALSEEDRKAAWAEYEAEKKGLSMRTNYQSPYSQMDMG
NPNYVSYNMAALASMTNQQLEDLINQGRQKVIEATNALKTLPRESLEDIIAEVWKENPAL
TEVQVQSIALGRQATVEMELKRREAVYRDVLTKQQTLMMYVQKLITNRKVQEQQLAMANQ
ATYLNQLAMQNGMMGAGLSQMDLLGLYQQLHGMGAHQGVGKNPGPSKGL
NT seq
6270 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagggtctactgaatcactccaagagaaaatgtcagggaaagaagaagagcct
ggaagctcagcgggcagtacgaagccttcctcttcacgcaacaagatgaagcccacctcc
gtagcaaagcacactgaagaaaatgaatctgctccctcagctgagagcgacaatgaaggt
gccacatctgacaatccatctgaaggtaacaccagcagcagatctaaaggtactttggtc
atgagacccactggaaatgaaaataaaggtgccatgaagcttcgagtggatttcaaacaa
aaactttcagatgacgccctccaaaagaaggtcagctgcactgcctgtggaaaacaggta
aaccagttccagcggaactcgttgtgtgagcatcctgcgctcaaagtcttaatttgcaag
tcgtgctacaactactacacaagtgatgatatcggcaaagattctgatggaatggatgag
caatgcaggtggtgtgctgaaggtgggaagctcatatgttgtgactactgtaacaacgct
ttctgcaagaagtgcattctgcgtaacctgggcagaaaagagctgtcaaacatcactgat
gagaactcaaaatggcactgttacgtatgccggtcagatccgctccaggatctggtcttc
aaatgtcgacgaattatggaaaaactagagcacgctcagctcaaacaacacaaggcagaa
aagagggaggagcgagacaagaagaaaaaaaagagcaggacaaccaaagagcacaaagct
ctcgccaacggaaaggaacatgctgaaggctctggagtcatgacattctcctacaaaaag
atggagatacccaaagaatatataaagaaagcaaaaagactagtggaaacaaccactggt
ttgaataatacattcatccaatttattcagcagacagctgaagatcaaggagacaggtct
atcaggtatcggcatttgaaagccttcaaggctgtgctctctgatttgagaaaagcccac
aatgtgctggaagctgctttggagcctgaattcaaaagcatggagttacagaacggtaat
gatgtccaacacgtcaaaaaaagtagttccactgcagaaccaacaggaatcgataaaatg
gatgcagatgcagattcaggagatggggtcgatgctgctccaaaatcagacacggagcca
cacaacgaagcagatgcgattcccgaaatggatgtgaacgaggagccgcaggatgaaacg
ggctcagctcgtgatagtggagtgaatctaaaagcagatgaaaaccaagattggggtgga
gggcttcagtcaggaatgtctgaagatgaggaaaaggagacgaatgaagaagcaagtgca
gttcaggatgctgtggtttccaaagatgaggagcaaaccaacgagcaggaagcaggctct
gaagaagtgtcaagtaaggctgtgatgaaagaccaccaaacagaaacagatgcacttgag
aaaatcataaaaacagaaacttgtgaggaacctgtgtcgactggtgagatgtccttagat
caagacatcatgtctgtacctccatccgtccccgaagagctttttcaaatggtggagagt
cttgcagactcgtcaacactttctaaaccggacactaattcagtcccagctaatgaggcg
aagtccaactctactcctgcagaagatcagctgccccagcccaaagttaagaatctcatt
gtcaagctgactcctgtgccagtcgtgaaaaccagtgggtcacgctcctccaggtccaaa
agcaaagaaaagagtgaagagtccaagtctaaaaaaaaaacagaagatgatgaccagtcg
gcttctaaagtgaaaaaagaaaccgagagcccaccacccagccgccgctccagcagatta
aagacgactcctttgaggaaacagagtgagaaaaaggtcgatggggattcatcagagtct
gaggaagacgtcaaaagcaagtccaagccatccaagaaatccagcgaccacgcgaaaaag
ctcgacaaggacaacaacactccagctcaaacaatagaggactctgactcggatgaaatt
ccgcatgcattgttggagaaagctgcagaaagcaaaagcacagatgaggagcaggagagc
acaaagggtaaaaaaggttcaattaaatcagatgattcttctcagaacactgaaaaccta
tcaaaacgcaaacgaaagactgcaacctccgagtcagacacagagaataaaagccagaag
ccatccaagaagaagaagcaaaaagactctgactgctcagactcggactccgaccagaaa
aaggggactagcaaagtatccaagaggagatctagccgcacaaagaaaaacaaagcaaaa
gaggaagagaagaaagactcgccagaaagcaagacagctactcggaagcgatcttatgaa
aagaagcggaagggaaagagtcctaaaggatcttcccagctccagtcttcctccagtgag
gaggaagaggaggaacaggctgaaggtgactctggagatgacagcgatgcacaaaagatt
aaacccataatggatgataatgtcatcaattcagtagggatctttcaacagtcttcagga
gatgaaattgacaataaggactctgtcaatccagtctgtgcagaagatgatgatgatgat
ccagaaaacaggattgctaagaaaatgcttctagctcaaataaaatcccactattcttcg
ggggcagagagttcttctgaggaagaagaaaaagaggaaaagtcttccaaaaaagttaaa
aaagacaaacaggatgaagaagatgaggatgatgaagaagaagacgaggacgatgacgaa
ggaactgaggactctgattcggatgtggaagtgaagaagagcgtcaaacgccacaaactg
cttcggcataaactctccatgagcgagggcgagtcgggagacggcaaagaggagggcaaa
aagaagaagaaaaggaaagagggcaagaaaaaatcaagaagcacatctgacagtgatgac
tcctcagactcagactttaaaaagtcagactccagttcaggatcagccctgagcgaggaa
gttagcggctcagaagatgatggcaaacgtcgaaagacgagatcgtctaagaagaaagac
gacgagaagcagaggagttacaagcagcagaagaagaagcggcgcaggattaaagttcag
gactcttcctccagcaacgagaagagcggaggtgaagatgatgatgaccaagatggagag
gggcgcaaaggacgcaaaaagatccgcaaaatcctgaaggacgacaacctacgaacggaa
accagagatgctctgaaggaagaagaggagaggaggaaacgtatagctgagagggaagca
ctccgggagaaacttagagaggttattgttgtagaagaagcttctaaggtgacatgtccc
gtcaccaccaagctggtgctggatgaggatgaagaaaccaaggagccgctggtgcaggtg
caccggaacctggtcacaaagctcaaacctcaccaggttgatggtgttcagtttatgtgg
gactgctgctgtgaatcagtgaaaaagattcagaagtcccctggctctggctgcatttta
gcccactgtatgggacttggaaaaacgttgcaggtggtgacattccttcatactttgctg
ctgtgtgaaaagctggattttgccacagcgctggtggtctgtcccctcaacactgtcctc
aattggctcaatgagtttgaaaagtggcaatatgggttgaaagatgaggagagtttagag
gtgactgagctcgccacagtaaagcgtccacaggagcgagcgtacgcccttcagacgtgg
cacgaatcgggtggcgttatgatcatgggatacgagatgtaccgaaacttgacgcagggg
cggaacatcaagagcaagaagctgaaggagacgctcaggaaaacccttgtagatccaggt
ccagatttggtgatttgtgatgaaggtcatatcctaaagaacgaggcttctgccgtctcc
aaagcaatgaatgccatcaggacaaagaggaggattgtgctgactggaacgcctctacag
aacaacctcattgaataccactgcatggtgaatttcatcaaggagaacctgttgggctca
gtcaaagagttcagaaatcgattcatcaaccccatccagaatggccagtgtgccgactca
actctacacgatgtccggattatgaaaaagagggctcacattctctacgagatgctggct
ggatgtgttcagaggaaagattacacggcactcaccaagttcttgcctcctaaacacgag
tatgtgctgtctgtcagaatgactccgcttcagtgcaaactctacagacactacctggag
cacttcacaggtgtggggaacgctttggaagggggccggggccgggcggggaccaaactt
ttccaggatttccagatgctcagcagaatctggacccatccctggtgccttcacctcgac
tacatcagcaaagaaaacaggggtttctttgacgaagacagtatggacgacttcgttgtg
tcagaaaccgacgagtcttccatgagcctgtcctccgagaacgaaaagccaaaaaagaaa
aagaaccagggaaaaggaaaaaagaaagagtcagaggagtcggacagtgatgatgtggag
gtcatcaaggagtggaacagtagctcccgcggcaggaacggagaaggtcgaaacaggcgg
gaacctgtagaagaacctcagccctctggagccgaaccagggagtccccgctctgctgac
tggcacaaagagtttgtcactgaggccgatgctgacatcctggcacactccggcaagctg
acgcttctgttcgagatcctgcgcatggctgaggaagtagaagataaagtgttggtgttc
agtcagtccctcatctctctggatctaattgaagacttccttgagctctcttgcaaagat
gaggatgatgaagatgctaaaccctctccatacaaaggtgaaggcaagtggtacaggaac
atcgactattatcgcctggacggttccaccaacgccgtcgctaggaagaagtgggctgaa
gagtttaacgacaccagtaacacaagagggcgcttgttcctcatttctacaagagctggc
tctcttggcatcaacctggtggcggccaacagggttgttatctttgacgcctcctggaat
ccttcatatgacatccagagtattttcagggtgtaccgctttggccagatcaaacctgtg
tacgtctacagattcctagcccaggggacaatggaggagaagatttacgagcggcaggta
accaagcagtccctttcattccgagtcgtggaccagcagcagatcgagaggcacttcacg
atgaacgagctgactgagctttactccttcgagccggacatgctggatgacccgtccgag
aagaaaagcaagaaagccacacctgtgcttcccaaggatcccctcctggctgagatgctg
cagaacaacaaggaccagctagtttgctaccatgagcacgactccctgctggaccacaag
gaggaggaagctctcagtgaggaagatcgcaaggccgcctgggccgagtacgaggcagag
aaaaagggtctgtccatgcggaccaactaccaatcaccctactctcaaatggacatgggc
aaccccaactatgtatcgtacaacatggcagctttggcctccatgaccaaccagcagctg
gaggatctcatcaaccagggacggcagaaagtcattgaggcaacaaatgccttaaaaact
ctgccccgggagtcgctggaagatatcatcgcagaagtgtggaaggaaaatccggccctc
actgaagttcaggtccagtctatagctttggggcgtcaagccacggtggagatggagctg
aagcgccgggaagccgtctacagagacgttctcaccaagcagcaaactctgatgatgtac
gtacagaagctcataaccaacaggaaggtccaggagcagcagctagcgatggctaaccag
gccacctacctaaaccagctggcaatgcagaacggcatgatgggcgccgggctcagccag
atggacctgctggggctgtaccagcagctgcacggcatgggagcacatcaaggcgtgggg
aagaacccgggcccttccaagggcctgtag
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integrated database retrieval system
