Oryzias melastigma (Indian medaka): 112153185
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Entry
112153185 CDS
T07439
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112153185 (rbm22)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112153185 (rbm22)
Spliceosome [BR:
oml03041
]
Complex B
Other components
Prp19-related factors
112153185 (rbm22)
Complex C
112153185 (rbm22)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH
RRM_occluded
RRM_3
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
zf-CCCH_12
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
112153185
NCBI-ProteinID:
XP_024138931
Ensembl:
ENSOMEG00000004904
UniProt:
A0A3B3BEC6
LinkDB
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Position
LG10:15423314..15427755
Genome browser
AA seq
426 aa
AA seq
DB search
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICSRPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLTVKDEIPRSDVNKEYYTQN
MEREMANSDGTRPVGQLGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSITTLYIGGLG
DNVTDGDLKGHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLILNGRRLTV
KWGRSQAARGKDGVKDDELGIRLDPVPGLPGALPPPPALDEEGHANYFNLDPSSAPAVMN
IGLPPPPGLNPPPPGFGPPMFHPMGPMAPPVPPTIAMGPPGAIHYPSQDPQRMGAHGAHG
SRHITE
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttcccttggatccaacacctacaaccgacaaaactgggaagacgcggatttt
ccaattttgtgtcagacatgcttgggggaaaatccttacatccgtatgacaaaagaaaaa
tatggaaaagaatgcaagatctgttctcgacctttcactgtattcagatggtgccctggg
actcgaatgcgtttcaagaagacagaagtctgccagacttgcagtaaaatgaaaaatgtt
tgtcagacatgtctgcttgatttagagtatggtttgcctatccaggttcgtgacacagga
ctcacagttaaagatgagattcctcgctcggatgtgaataaagaatactacacacagaat
atggaaagagagatggctaattccgacggcacgcggccggtaggccaactcggcaaggct
acaagctcaagtgatatgttgctcaagctggccaggaccacgccgtattacaagaggaac
cggccgcatatctgctccttctgggtgaagggagagtgtaagagaggcgaagagtgtccc
tacaggcatgaaaagcccaccgatcctgatgatcctctggctgaccaaaacatcaaggac
cgttactatggcatcaatgacccagttgctgacaagctactaaagcgggcctcaaccatg
cctcgactagaccctccagaggacaagtccatcaccactctctacataggcggtttgggt
gacaatgtcacagatggagatctcaagggtcacttctaccagtttggtgaaatccgaacc
attactgtcgtccagaggcagcagtgcgccttcatccagtttgccacacgccaggcagct
gaaatggctgcagaaaagtccttcaacaaactcatccttaacggacggaggctcactgtc
aagtgggggaggtctcaagcagcgagaggaaaagatggtgtcaaagatgatgagctgggt
attagactggatcctgtacctggacttcctggagctctgcctccacctccagctttagat
gaagagggtcatgccaactatttcaacctggaccccagctccgcccctgctgtcatgaac
ataggtttgcctccacctccaggcctcaacccacctcctccaggttttggtcctccaatg
ttccaccctatggggcccatggctccacctgtgccccctactatagcaatgggacctcct
ggtgcaatccactatccctcccaggatcctcagcgcatgggtgctcacggagctcatggt
tcccgtcatatcaccgagtga
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