KEGG   Oryzias melastigma (Indian medaka): 112153185
Entry
112153185         CDS       T07439                                 
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112153185 (rbm22)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oml03041]
    112153185 (rbm22)
Spliceosome [BR:oml03041]
 Complex B
  Other components
   Prp19-related factors
    112153185 (rbm22)
 Complex C
    112153185 (rbm22)
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus Nup35_RRM_2 zf-CCCH_2 zf-CCCH RRM_occluded RRM_3 zf-CCCH_4 RRM_YTH1 zf-CCCH_10 zf-CCCH_12 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 112153185
NCBI-ProteinID: XP_024138931
Ensembl: ENSOMEG00000004904
UniProt: A0A3B3BEC6
LinkDB
Position
LG10:15423314..15427755
AA seq 426 aa
MATSLGSNTYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKECKICSRPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLTVKDEIPRSDVNKEYYTQN
MEREMANSDGTRPVGQLGKATSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDPPEDKSITTLYIGGLG
DNVTDGDLKGHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMAAEKSFNKLILNGRRLTV
KWGRSQAARGKDGVKDDELGIRLDPVPGLPGALPPPPALDEEGHANYFNLDPSSAPAVMN
IGLPPPPGLNPPPPGFGPPMFHPMGPMAPPVPPTIAMGPPGAIHYPSQDPQRMGAHGAHG
SRHITE
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcgacttcccttggatccaacacctacaaccgacaaaactgggaagacgcggatttt
ccaattttgtgtcagacatgcttgggggaaaatccttacatccgtatgacaaaagaaaaa
tatggaaaagaatgcaagatctgttctcgacctttcactgtattcagatggtgccctggg
actcgaatgcgtttcaagaagacagaagtctgccagacttgcagtaaaatgaaaaatgtt
tgtcagacatgtctgcttgatttagagtatggtttgcctatccaggttcgtgacacagga
ctcacagttaaagatgagattcctcgctcggatgtgaataaagaatactacacacagaat
atggaaagagagatggctaattccgacggcacgcggccggtaggccaactcggcaaggct
acaagctcaagtgatatgttgctcaagctggccaggaccacgccgtattacaagaggaac
cggccgcatatctgctccttctgggtgaagggagagtgtaagagaggcgaagagtgtccc
tacaggcatgaaaagcccaccgatcctgatgatcctctggctgaccaaaacatcaaggac
cgttactatggcatcaatgacccagttgctgacaagctactaaagcgggcctcaaccatg
cctcgactagaccctccagaggacaagtccatcaccactctctacataggcggtttgggt
gacaatgtcacagatggagatctcaagggtcacttctaccagtttggtgaaatccgaacc
attactgtcgtccagaggcagcagtgcgccttcatccagtttgccacacgccaggcagct
gaaatggctgcagaaaagtccttcaacaaactcatccttaacggacggaggctcactgtc
aagtgggggaggtctcaagcagcgagaggaaaagatggtgtcaaagatgatgagctgggt
attagactggatcctgtacctggacttcctggagctctgcctccacctccagctttagat
gaagagggtcatgccaactatttcaacctggaccccagctccgcccctgctgtcatgaac
ataggtttgcctccacctccaggcctcaacccacctcctccaggttttggtcctccaatg
ttccaccctatggggcccatggctccacctgtgccccctactatagcaatgggacctcct
ggtgcaatccactatccctcccaggatcctcagcgcatgggtgctcacggagctcatggt
tcccgtcatatcaccgagtga

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