Oryzias melastigma (Indian medaka): 112153288
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Entry
112153288 CDS
T07439
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112153288 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oml03021
]
112153288 (polr1a)
Enzymes [BR:
oml01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112153288 (polr1a)
Transcription machinery [BR:
oml03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
112153288 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Motif
Other DBs
NCBI-GeneID:
112153288
NCBI-ProteinID:
XP_024139139
LinkDB
All DBs
Position
LG10:24351581..24376996
Genome browser
AA seq
1691 aa
AA seq
DB search
MMFGKDVPWRRLSGISFGMYSAEEIRKLSVKAVTNPKFLDAVGNVAPNSLYDLALGPADF
KEVCSTCCQDFNNCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLLCHILTCPRAAIHLL
LNQLKLIDHGAIQEVYQIEHILNQHLEENPKASGDEIEELLRNYANETIKSSVSENFKPT
KHLVEKKACLINDFWKIHMKTRKCPYCRSGRTLVRREHNSKLIITSPSGAQTNENTDENV
MAGRRVYLTASTAKDHIIKIWEKEGFFLSCLFPGLEESASPAGGQSGFYPDLFFTELLVV
PPCRFRPINRLGDQMFTNGQTVNMQAVMKDCEIIRKLLALMAGEKNMEGEEAPDITDQTF
LSGITGLTLTDKLYNMWIRLQSHVNIVFDSDMDKLMTEKYPGVRQILEKKEGLFRKHMMG
KRVDYAARSVICPDMYIETNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPGA
SMVINEDGRRTILSATNFTQREAVAKQLLTPSLGAHKMPMKIVNRHIKNGDVLLLNRQPT
LHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVSTN
QQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRDQYTELVFRGLTDKRGRVKLLPPAI
LKPEHLWTGKQVVSTLLLNVIPEKAVPLNLNGKSKIPSKAWIKLPPRAAPGYQPESMCDS
QVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGAISGKLLGCLARLFTAYLQLYRGF
TLGVEDILVKPGANKKRKKIIESSRNVGSQALQAAFNLPPSVDPAEAHSRWQDAHLNPDQ
RDFSTADHKFKEVANQVNNDINKVCMPVGLHTAFPDNNLQLMVQSGAKGSTVNTMQISCL
LGQIELEGRRPPLMPSGKFLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREGL
VDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTPFLQPR
QFPFIEDNFEVIRRSQSLDSVLARLDAQTAGQHFDAIQRWKAKREMLNPRRGAFLLFSKK
KLGKLKDSTEGVEPVSSRNPAVLQLVGQWHSLDEAGRAKYLKKASRCPEPSLNLFRPDVC
LGSVSENFHGITEKYLQNRNSAHSVDTHSLRQLLHYKWQRSLCDPGEAVGLLAAQSIGEP
STQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSKIKTPMMSIPVLHSKKALKKAKMLR
KKLARVCLSEVLQKVDVVETLQERNFQKLRVFKVTFHLLHPDRYSEDKLLTPNQILHYME
TRFFHLLLDAIKKRTARLSSIAVETRKATSTDKDTDGEGAAGTSRLDEGEAEEDREIVDD
QDNEGDADASDAKRKGKQEEEVDYESEEEQGDNEAEENDEEGEVEAEENAEAHATEESQL
ETPDARIETRKKKKKKVMKESEFLMRVNSVLDVNSAIEGYRFDQQDELWCEVDLALPVTK
VHFDLTAILSTVAQNAVVMETRGLTRCLLSETTTKSGEKETVLNTEGINMHEMFKYGDIL
DLNKLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYK
PLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSHDQLESPSACLVVGKVVKGGTGLFEL
KQPLQHIKSPS
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttggaaaggacgtgccatggcggcgtttaagcggcatttcgtttggaatgtac
tccgccgaagaaataagaaagttgagcgtgaaggcagtcacaaaccccaagtttcttgat
gctgttggaaatgtggcccccaacagtctttatgatctggctctggggccagcagacttt
aaagaggtctgttcaacctgctgtcaggatttcaacaactgccctggacactttgggcac
atagaattacctctacctgtatacaacccgctgttttttgataaactgtacctgttgatc
cgcggttcctgcctgttgtgtcatatactaacctgtcctcgggctgccatccacctgctg
ctgaaccagttgaagttgatcgaccatggagcaattcaggaggtctaccagatcgaacac
attctcaaccagcacctggaagagaatccaaaagcttcaggagatgaaattgaggagctg
ctgcgcaactatgcaaatgaaactattaaatcgagtgtttctgaaaacttcaaaccaacg
aaacatctggtggaaaagaaggcttgtttgataaatgacttctggaagattcacatgaaa
accaggaagtgtccttactgtaggagcggcaggactcttgtgcgccgtgaacacaacagt
aagctgatcatcacgtctccgtcaggagcacagaccaatgaaaacactgatgagaatgtc
atggctggaaggagagtctacctgacagccagcacagccaaagaccatatcataaaaatc
tgggagaaagaaggtttcttcctcagctgcctcttccctgggctggaagagagcgcgagt
cccgcaggcggacagagcggcttttatccggacctcttcttcacggagctgctggtggtc
ccaccctgcaggtttcgaccaatcaacagactcggtgaccagatgtttacaaacggtcag
actgtcaacatgcaggcggtgatgaaggactgtgaaatcatccggaaacttctggctctc
atggcgggagagaagaacatggagggggaagaggctcccgatattacggatcagacattc
ctgtccggaatcaccgggttgacattaacggataaactctacaacatgtggatccgcctt
cagagccacgttaacatcgtctttgacagcgacatggacaaactgatgacagagaaatac
cccggagtcagacagattctggagaaaaaagagggcttgttccggaagcacatgatgggc
aaacgcgtggactacgccgctcgctccgtcatctgccccgacatgtacatagaaaccaac
gagatcggaatacccatggtttttgccaccaagctgacctaccctcagccagtcaccccg
tggaacgtgaaggagctccgccaggctgtcctcaacggtcccaacgtccatccaggcgcc
tccatggtgataaacgaggacggcaggagaaccattttatcagctaccaacttcacgcag
agggaggcggtcgctaagcagctgctgacgccctctctgggtgcgcacaagatgcccatg
aagatagtgaatcgccacataaagaacggagatgttttgttgctcaacagacagccgact
ctgcacagaccgtccatacaagctcactgcgctcgcattttaccgggagagaaggttctg
aggctccattatgcaaactgcaaggcgtacaacgcagattttgatggagacgaaatgaac
gctcactttcctcagagtgagctgggccgagcagaggcctacacgttagtcagcacaaac
cagcagtacctggttccgaaggacggtaaacctctagcgggtctgatccaggaccacatg
gtttcaggaaccaggatgacgatccgaggctgtttcttcaccagagatcagtacaccgag
ttggtgttccgaggtctgacggacaaacgaggcagagtgaagctgctgcctccagccatc
ctcaaaccggagcatctgtggaccggaaaacaggtcgtttccactcttctgctgaatgta
atccctgagaaggcggtgcctctgaacttaaatgggaagtctaaaatccccagtaaggcg
tggatcaaactcccgccgcgcgctgctccgggataccaaccggagagcatgtgtgactca
caggtggtgatccgacagggggagctgttagtcggggttctggacaaagcccactacggc
tcctctgcctacggtttggttcattgctgctacgaactgtacggcggagcaatcagcgga
aaactgctgggctgtctggctcgactgttcaccgcctacctgcagctgtaccgaggcttc
actctgggggtggaggacatcctggtgaagccgggcgccaacaagaagaggaaaaaaatc
atagaaagttccagaaacgtcggctcccaggctcttcaggcggcgttcaacctcccaccc
agcgtggatcccgctgaggcccacagccgatggcaggacgcccacctcaaccccgaccag
agggacttcagcacggccgaccacaaattcaaagaagttgccaaccaagtgaacaatgac
atcaacaaggtgtgcatgccggtgggactccacaccgccttcccggacaacaacctgcag
ctgatggttcagtctggcgccaaggggtctacggtcaacaccatgcagatctcctgtctg
ctcggtcagattgagctggaaggccgcagacctcctctgatgccctcaggaaagtttctg
ccgtgcttccagccctacgacccctcgcccggcgcgggggggttcgtttctggaagattt
ctcacaggcatcaaacctcaggagtttttctttcactgcatggccggcagagaaggcctt
gtcgacacggctgtgaaaacctccagatctggatatctgcaaagatgtatcataaagcac
ctggagggtctggttgtgcagtacgatctgactgtgagggacagcgatggatcagtggtt
cagttcctgtacggtgaagatggcctggacattcccaaaactcccttcctgcagccgaga
cagtttcccttcatagaggacaacttcgaggtcatcaggaggtcccagagtttggacagc
gttttggctcggctggacgctcagacggctggtcaacactttgacgccatccaacgctgg
aaagcaaagagggagatgctaaatcctcgaagaggagcgttcctactgttttccaagaaa
aaactggggaagctaaaagactccactgaaggggtggagcctgtttccagcagaaatcct
gctgttctgcagctggttggccagtggcattctctggatgaagcgggcagagcaaagtac
ctgaagaaggcgtcccgctgcccggagccctccctgaacctgtttagacccgatgtgtgc
ctgggatcggtgtcggaaaactttcacggcatcacagagaaatacctgcagaacaggaac
agtgcacactctgtggacacccacagcctcaggcagctgctgcattataagtggcagcgg
tcgctgtgtgatccaggagaagcggtgggactgctggctgctcagtccatcggggaaccc
tccacacagatgaccctcaacactttccactttgctggcagaggagagatgaacgtcacc
ttggggatccctcgactgagagagatcctgatggttgccagttccaaaatcaaaaccccc
atgatgagcattcctgtcctgcacagcaagaaagctctgaagaaggccaagatgctgcgc
aagaagctggcgcgcgtctgcctgtctgaggtcctgcagaaggtggatgttgttgagact
ctgcaagaaagaaattttcaaaagcttcgtgtgttcaaagtcacctttcacctcctgcat
cctgaccgctacagcgaggacaaactgttgacccccaaccagatccttcactacatggaa
accagatttttccacctcctcctcgatgccattaagaagcgaactgccaggctgtcctcc
atcgccgtggaaacgaggaaagccacctccacggataaagacactgatggagaaggagca
gctggaacctcacggttggatgagggagaagcagaagaggacagggagatcgttgatgac
caggataatgaaggagacgcggatgcatcagatgcaaagagaaaaggcaaacaagaggaa
gaggtggactacgaaagtgaagaagaacaaggcgataacgaagcggaggaaaacgatgag
gaaggcgaggtggaggcagaggagaacgcagaagcacatgccacagaggagtctcagctg
gagactcctgacgcgagaatagagaccaggaagaagaaaaagaaaaaagtgatgaaagag
tcggagttcctgatgagagtcaactcagttctggatgtaaactcagccatagaaggatat
cgcttcgaccagcaggatgagctctggtgtgaggttgatctggccttaccggtgaccaaa
gttcacttcgacttgacggccatcttgtcgactgtggcccagaatgcggtcgtcatggaa
accaggggcctgacacgctgcctgctgagcgaaaccaccacgaaatctggagaaaaggaa
acggtcctgaacacggaaggcatcaacatgcacgaaatgttcaagtacggcgatattttg
gatctcaacaagctgtactccaacgaagtccacgccatggccaacacgtacgggatcgag
gtggccctgaaggtcatagagaaggagatcaaagatgtcttcgccgtttatggtattgag
gtggatccccgacatttgtctctggtggcggactacatgtgcttcgagggcgtttataag
cctctgaaccgccacgccatcaggtccaactcatctcctctgcagcagatgacttttgag
actagctacaagttcctcaaacaggccaccatgctggggtcacatgatcagctggagtcg
ccctccgcctgcctggtagttggaaaggtggtcaaaggaggcaccggactgtttgaactg
aagcaacccctgcagcacattaagagtccctcttag
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integrated database retrieval system
