Oryzias melastigma (Indian medaka): 112153307
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Entry
112153307 CDS
T07439
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112153307 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112153307 (cnot6a)
Enzymes [BR:
oml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112153307 (cnot6a)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112153307 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112153307 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
112153307
NCBI-ProteinID:
XP_024139174
Ensembl:
ENSOMEG00000005295
LinkDB
All DBs
Position
LG10:15662065..15676893
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AA seq
559 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSSALWSLTHLTALHLSD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMSLYQEPDGTRRLLSYLLDNLAGAIKRIPTEQPPARSWISLQEP
ERTRSSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMGCNSDIISLQE
VETEQYYNFFLPELKEQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSAVQKHTV
EFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLEVRKEMMELSSGKSLHGMEKQLLLVANA
HMHWDPEYSDVKLVQTMMFLSEVKSIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDS
GVVEYLSTGGVDCTHKDFKELRYSDCLTKFNCNGKNSTSNGRITHGFKLKSAYENGLMPY
TNYTFDFKGVIDYIFYSKPHLNVLGILGPLDPHWLVENNVTGCPHPHIPSDHFSLFAQLE
LLLPNIPSQVNGLHLPARR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgacccgccggatcccaggcggatgtacacaattatgtccagc
gaggaggcagcaaatgggaagaagtcatactgggctgagctggaaatcagcggccgagta
aggagtctcagctcagccctgtggtctctcacccacctcactgccctacacctcagtgac
aactcactgtcacgcatcccgccagacattgccaaattacacaacctggtgtacctggat
ctctcatccaataagatcaggagcctgccagcagagctcggcaacatggtatctctcagg
gaattgcttttaaataacaaccagttgcgggttctgccatttgagttggggaaacttttt
cagttacaaactcttgggttgaaaggaaacccacttgcacaagaaataatgagcctctac
caggaacccgatggcacacgaagactgctcagctacttgttagacaatctggcaggtgct
attaaacgcataccaacagagcagcctccagcccggtcatggatctcactccaggaacca
gaacgaacgcgctcctcagcattgttctctgtgatgtgctacaatgtgctgtgcgataag
tatgccacacgacagctgtacggctactgcccctcctgggctctaaactgggagtacagg
aagaaatccatcatgcaggaaatcatgggttgcaactcagacatcatcagcttgcaggaa
gttgagacggagcaatactacaatttcttcctgccggagctgaaagagcaaggatatgac
gggttcttcagtccaaaatcccgagccagaactatgtcggagtctgaccgtaaacatgtg
gacgggtgtgcaattttttacaaaacagagaagttcagcgccgtgcagaaacacacggta
gagttcaaccagctggccatggcaaactccgagggctctgaggccatgctcaacagggtg
atgacaaaggacaacattggagtcgctgtactgctcgaagtccgcaaagagatgatggag
ctgtcctctggtaagtcgctccacggcatggagaagcagcttctgctggtggccaacgcc
cacatgcactgggacccagaatactctgacgtcaagctggtccagaccatgatgttcctg
tcagaggtgaagagcatagtggacaaggccacacgcagcctcaagttgtcatctgtctct
ggtgagaccaatgcaattccactggtgctgtgtgctgacctcaactctttgccagactct
ggtgtcgtggaatacctgagtactggtggcgtggactgcacccataaggacttcaaggag
ctgcgttatagtgactgcctgaccaaattcaactgcaacggcaagaacagcacgtcgaac
ggcaggatcacccacggcttcaagctgaagagcgcctacgagaatggcctgatgccttat
accaactacacctttgattttaagggtgtcatcgactacattttctactccaagcctcac
ctgaacgtgctggggatcctgggaccgctggatccccactggcttgttgaaaacaatgtc
accggctgcccccacccccacatcccctccgaccacttctccctctttgctcagctggag
ttgctcctgcccaacataccctcccaggtcaatgggcttcacctgcctgcgcgcaggtag
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